RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 SYT5O00445 386 aa24.67■■□□□ 1.54
CCDC88C-205ENST00000553403 B4GAT1O43505 415 aa24.67■■□□□ 1.54
CCDC88C-205ENST00000553403 JUNBP17275 347 aaPredicted RBP24.67■■□□□ 1.54
CCDC88C-205ENST00000553403 CBLP22681 906 aa24.67■■□□□ 1.54
CCDC88C-205ENST00000553403 GSTT1P30711 240 aa24.67■■□□□ 1.54
CCDC88C-205ENST00000553403 MAMSTRQ6ZN01 415 aa24.67■■□□□ 1.54
CCDC88C-205ENST00000553403 KCTD8Q6ZWB6 473 aa24.67■■□□□ 1.54
CCDC88C-205ENST00000553403 C16orf62Q7Z3J2 963 aa24.67■■□□□ 1.54
CCDC88C-205ENST00000553403 VANGL1Q8TAA9 524 aaPredicted RBP24.67■■□□□ 1.54
CCDC88C-205ENST00000553403 ZNF675Q8TD23 568 aa24.67■■□□□ 1.54
CCDC88C-205ENST00000553403 NMNAT1Q9HAN9 279 aaPredicted RBP24.67■■□□□ 1.54
CCDC88C-205ENST00000553403 TMCC3Q9ULS5 477 aa24.67■■□□□ 1.54
CCDC88C-205ENST00000553403 TMEM221A6NGB7 291 aa24.66■■□□□ 1.54
CCDC88C-205ENST00000553403 TLCD2A6NGC4 264 aa24.66■■□□□ 1.54
CCDC88C-205ENST00000553403 CCDC160A6NGH7 325 aa24.66■■□□□ 1.54
CCDC88C-205ENST00000553403 H3BSA7 217 aa24.66■■□□□ 1.54
CCDC88C-205ENST00000553403 M0R296 226 aa24.66■■□□□ 1.54
CCDC88C-205ENST00000553403 RDH16O75452 317 aa24.66■■□□□ 1.54
CCDC88C-205ENST00000553403 OXSR1O95747 527 aaPredicted RBP24.66■■□□□ 1.54
CCDC88C-205ENST00000553403 H1F0P07305 194 aaKnown RBP24.66■■□□□ 1.54
CCDC88C-205ENST00000553403 AGXTP21549 392 aa24.66■■□□□ 1.54
CCDC88C-205ENST00000553403 SOX18P35713 384 aa24.66■■□□□ 1.54
CCDC88C-205ENST00000553403 GABRA4P48169 554 aa24.66■■□□□ 1.54
CCDC88C-205ENST00000553403 MAPK10P53779 464 aa24.66■■□□□ 1.54
CCDC88C-205ENST00000553403 FAM92BQ6ZTR7 304 aa24.66■■□□□ 1.54
CCDC88C-205ENST00000553403 PARP8Q8N3A8 854 aa24.66■■□□□ 1.54
CCDC88C-205ENST00000553403 OR9Q2Q8NGE9 314 aa24.66■■□□□ 1.54
CCDC88C-205ENST00000553403 CD180Q99467 661 aa24.66■■□□□ 1.54
CCDC88C-205ENST00000553403 VCX3AQ9NNX9 186 aa24.66■■□□□ 1.54
CCDC88C-205ENST00000553403 PLCL2Q9UPR0 1127 aa24.66■■□□□ 1.54
CCDC88C-205ENST00000553403 CLCA2Q9UQC9 943 aa24.66■■□□□ 1.54
CCDC88C-205ENST00000553403 RHPN2P1A8MT19 583 aa24.66■■□□□ 1.54
CCDC88C-205ENST00000553403 PLOD3O60568 738 aa24.66■■□□□ 1.54
CCDC88C-205ENST00000553403 LDB3O75112 727 aa24.66■■□□□ 1.54
CCDC88C-205ENST00000553403 CPNE6O95741 557 aa24.66■■□□□ 1.54
CCDC88C-205ENST00000553403 ANGPTL1O95841 491 aa24.66■■□□□ 1.54
CCDC88C-205ENST00000553403 ALPPP05187 535 aa24.66■■□□□ 1.54
CCDC88C-205ENST00000553403 CTSBP07858 339 aa24.66■■□□□ 1.54
CCDC88C-205ENST00000553403 EPHA2P29317 976 aa24.66■■□□□ 1.54
CCDC88C-205ENST00000553403 ID2Q02363 134 aa24.66■■□□□ 1.54
CCDC88C-205ENST00000553403 SIGLEC14Q08ET2 396 aa24.66■■□□□ 1.54
CCDC88C-205ENST00000553403 EXOSC6Q5RKV6 272 aaKnown RBP24.66■■□□□ 1.54
CCDC88C-205ENST00000553403 DEF8Q6ZN54 512 aa24.66■■□□□ 1.54
CCDC88C-205ENST00000553403 OLIG3Q7RTU3 272 aa24.66■■□□□ 1.54
CCDC88C-205ENST00000553403 LACC1Q8IV20 430 aa24.66■■□□□ 1.54
CCDC88C-205ENST00000553403 OR9A4Q8NGU2 314 aa24.66■■□□□ 1.54
CCDC88C-205ENST00000553403 NIPSNAP1Q9BPW8 284 aa24.66■■□□□ 1.54
CCDC88C-205ENST00000553403 TUBA1CQ9BQE3 449 aa24.66■■□□□ 1.54
CCDC88C-205ENST00000553403 TRIM45Q9H8W5 580 aaPredicted RBP24.66■■□□□ 1.54
CCDC88C-205ENST00000553403 ERVMER34-1Q9H9K5 563 aa24.66■■□□□ 1.54
CCDC88C-205ENST00000553403 POLR1BQ9H9Y6 1135 aa24.66■■□□□ 1.54
CCDC88C-205ENST00000553403 UCKL1Q9NWZ5 548 aa24.66■■□□□ 1.54
CCDC88C-205ENST00000553403 RHCGQ9UBD6 479 aa24.66■■□□□ 1.54
CCDC88C-205ENST00000553403 CSNK1G3Q9Y6M4 447 aa24.66■■□□□ 1.54
CCDC88C-205ENST00000553403 BLACEA4D250 179 aa24.65■■□□□ 1.54
CCDC88C-205ENST00000553403 FAM227AF5H4B4 570 aa24.65■■□□□ 1.54
CCDC88C-205ENST00000553403 FAAHO00519 579 aa24.65■■□□□ 1.54
CCDC88C-205ENST00000553403 CHST10O43529 356 aa24.65■■□□□ 1.54
CCDC88C-205ENST00000553403 SDC3O75056 442 aa24.65■■□□□ 1.54
CCDC88C-205ENST00000553403 SEMA7AO75326 666 aa24.65■■□□□ 1.54
CCDC88C-205ENST00000553403 CHRNEQ04844 493 aa24.65■■□□□ 1.54
CCDC88C-205ENST00000553403 MAD2L1BPQ15013 274 aaPredicted RBP24.65■■□□□ 1.54
CCDC88C-205ENST00000553403 GARNL3Q5VVW2 1013 aa24.65■■□□□ 1.54
CCDC88C-205ENST00000553403 ZNF770Q6IQ21 691 aaPredicted RBP24.65■■□□□ 1.54
CCDC88C-205ENST00000553403 ZCCHC12Q6PEW1 402 aa24.65■■□□□ 1.54
CCDC88C-205ENST00000553403 RBM45Q8IUH3 476 aaKnown RBP24.65■■□□□ 1.54
CCDC88C-205ENST00000553403 ALDH16A1Q8IZ83 802 aa24.65■■□□□ 1.54
CCDC88C-205ENST00000553403 CNIH3Q8TBE1 160 aa24.65■■□□□ 1.54
CCDC88C-205ENST00000553403 ANKRD9Q96BM1 317 aaPredicted RBP24.65■■□□□ 1.54
CCDC88C-205ENST00000553403 ZDHHC12Q96GR4 267 aa24.65■■□□□ 1.54
CCDC88C-205ENST00000553403 EPPINO95925 133 aa24.64■■□□□ 1.53
CCDC88C-205ENST00000553403 NT5EP21589 574 aa24.64■■□□□ 1.53
CCDC88C-205ENST00000553403 GGT2P36268 569 aa24.64■■□□□ 1.53
CCDC88C-205ENST00000553403 MLLT3P42568 568 aaPredicted RBP24.64■■□□□ 1.53
CCDC88C-205ENST00000553403 DMWDQ09019 674 aa24.64■■□□□ 1.53
CCDC88C-205ENST00000553403 FAM53BQ14153 422 aa24.64■■□□□ 1.53
CCDC88C-205ENST00000553403 ARHGAP11BQ3KRB8 267 aa24.64■■□□□ 1.53
CCDC88C-205ENST00000553403 DCST1Q5T197 706 aa24.64■■□□□ 1.53
CCDC88C-205ENST00000553403 COMTD1Q86VU5 262 aa24.64■■□□□ 1.53
CCDC88C-205ENST00000553403 SLC16A11Q8NCK7 471 aa24.64■■□□□ 1.53
CCDC88C-205ENST00000553403 ADAMTS18Q8TE60 1221 aa24.64■■□□□ 1.53
CCDC88C-205ENST00000553403 RSL24D1Q9UHA3 163 aaKnown RBP24.64■■□□□ 1.53
CCDC88C-205ENST00000553403 A4GNTQ9UNA3 340 aa24.64■■□□□ 1.53
CCDC88C-205ENST00000553403 PCDHGA6Q9Y5G7 932 aa24.64■■□□□ 1.53
CCDC88C-205ENST00000553403 TRBV4-1A0A0J9YWV2 114 aa24.63■■□□□ 1.53
CCDC88C-205ENST00000553403 KIF1CO43896 1103 aaKnown RBP24.63■■□□□ 1.53
CCDC88C-205ENST00000553403 FUT4P22083 530 aa24.63■■□□□ 1.53
CCDC88C-205ENST00000553403 ELAVL4P26378 380 aaKnown RBP24.63■■□□□ 1.53
CCDC88C-205ENST00000553403 HOXA6P31267 233 aa24.63■■□□□ 1.53
CCDC88C-205ENST00000553403 HPCAP84074 193 aa24.63■■□□□ 1.53
CCDC88C-205ENST00000553403 PRICKLE4Q2TBC4 344 aa24.63■■□□□ 1.53
CCDC88C-205ENST00000553403 TRMT12Q53H54 448 aaKnown RBP24.63■■□□□ 1.53
CCDC88C-205ENST00000553403 ZNF311Q5JNZ3 666 aa24.63■■□□□ 1.53
CCDC88C-205ENST00000553403 DHRS4L2Q6PKH6 230 aa24.63■■□□□ 1.53
CCDC88C-205ENST00000553403 B3GNT8Q7Z7M8 397 aa24.63■■□□□ 1.53
CCDC88C-205ENST00000553403 CCDC71Q8IV32 467 aaPredicted RBP24.63■■□□□ 1.53
CCDC88C-205ENST00000553403 AQP11Q8NBQ7 271 aa24.63■■□□□ 1.53
CCDC88C-205ENST00000553403 BPIFB6Q8NFQ5 453 aa24.63■■□□□ 1.53
CCDC88C-205ENST00000553403 NR4A3Q92570 626 aa24.63■■□□□ 1.53
CCDC88C-205ENST00000553403 TGM7Q96PF1 710 aa24.63■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms