RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 EDARQ9UNE0 448 aa9.97□□□□□ -0.81
VTI1BP3-201ENST00000550220 C15orf41Q9Y2V0 281 aa9.97□□□□□ -0.81
VTI1BP3-201ENST00000550220 LRBAP50851 2863 aa9.97□□□□□ -0.81
VTI1BP3-201ENST00000550220 CACNA1CQ13936 2221 aa9.97□□□□□ -0.81
VTI1BP3-201ENST00000550220 FRG2CA6NGY1 282 aa9.96□□□□□ -0.82
VTI1BP3-201ENST00000550220 SYT5O00445 386 aa9.96□□□□□ -0.82
VTI1BP3-201ENST00000550220 TO15178 435 aa9.96□□□□□ -0.82
VTI1BP3-201ENST00000550220 CBR3O75828 277 aa9.96□□□□□ -0.82
VTI1BP3-201ENST00000550220 SLITRK5O94991 958 aa9.96□□□□□ -0.82
VTI1BP3-201ENST00000550220 ACTL6AO96019 429 aa9.96□□□□□ -0.82
VTI1BP3-201ENST00000550220 IL2RAP01589 272 aa9.96□□□□□ -0.82
VTI1BP3-201ENST00000550220 TSPAN8P19075 237 aa9.96□□□□□ -0.82
VTI1BP3-201ENST00000550220 ENDOUP21128 410 aaKnown RBP9.96□□□□□ -0.82
VTI1BP3-201ENST00000550220 MPIP34949 423 aa9.96□□□□□ -0.82
VTI1BP3-201ENST00000550220 CCT5P48643 541 aa9.96□□□□□ -0.82
VTI1BP3-201ENST00000550220 MRPS22P82650 360 aaKnown RBP9.96□□□□□ -0.82
VTI1BP3-201ENST00000550220 PLCXD2Q0VAA5 305 aa9.96□□□□□ -0.82
VTI1BP3-201ENST00000550220 SLC29A2Q14542 456 aa9.96□□□□□ -0.82
VTI1BP3-201ENST00000550220 ERCC6LQ2NKX8 1250 aa9.96□□□□□ -0.82
VTI1BP3-201ENST00000550220 VASNQ6EMK4 673 aa9.96□□□□□ -0.82
VTI1BP3-201ENST00000550220 SCIMPQ6UWF3 145 aa9.96□□□□□ -0.82
VTI1BP3-201ENST00000550220 TMEM64Q6YI46 380 aa9.96□□□□□ -0.82
VTI1BP3-201ENST00000550220 LACC1Q8IV20 430 aa9.96□□□□□ -0.82
VTI1BP3-201ENST00000550220 FAM76AQ8TAV0 307 aa9.96□□□□□ -0.82
VTI1BP3-201ENST00000550220 ZNF681Q96N22 645 aa9.96□□□□□ -0.82
VTI1BP3-201ENST00000550220 GNRHR2Q96P88 292 aa9.96□□□□□ -0.82
VTI1BP3-201ENST00000550220 TIMP4Q99727 224 aa9.96□□□□□ -0.82
VTI1BP3-201ENST00000550220 PRDM14Q9GZV8 571 aa9.96□□□□□ -0.82
VTI1BP3-201ENST00000550220 NXF5Q9H1B4 397 aaKnown RBP9.96□□□□□ -0.82
VTI1BP3-201ENST00000550220 SLC6A15Q9H2J7 730 aa9.96□□□□□ -0.82
VTI1BP3-201ENST00000550220 PFDN4Q9NQP4 134 aa9.96□□□□□ -0.82
VTI1BP3-201ENST00000550220 TNFRSF10DQ9UBN6 386 aa9.96□□□□□ -0.82
VTI1BP3-201ENST00000550220 DLGAP4Q9Y2H0 992 aa9.96□□□□□ -0.82
VTI1BP3-201ENST00000550220 CCDC168Q8NDH2 2452 aa9.95□□□□□ -0.82
VTI1BP3-201ENST00000550220 A0A1B0GTL3 188 aa9.95□□□□□ -0.82
VTI1BP3-201ENST00000550220 A0A1W2PS29 197 aa9.95□□□□□ -0.82
VTI1BP3-201ENST00000550220 OR6C70A6NIJ9 312 aa9.95□□□□□ -0.82
VTI1BP3-201ENST00000550220 SNPHO15079 494 aa9.95□□□□□ -0.82
VTI1BP3-201ENST00000550220 PCDH7O60245 1069 aa9.95□□□□□ -0.82
VTI1BP3-201ENST00000550220 GLRA3O75311 464 aa9.95□□□□□ -0.82
VTI1BP3-201ENST00000550220 ZWINTO95229 277 aa9.95□□□□□ -0.82
VTI1BP3-201ENST00000550220 PYGBP11216 843 aa9.95□□□□□ -0.82
VTI1BP3-201ENST00000550220 GCAP28676 217 aa9.95□□□□□ -0.82
VTI1BP3-201ENST00000550220 KRT20P35900 424 aa9.95□□□□□ -0.82
VTI1BP3-201ENST00000550220 ADH7P40394 386 aa9.95□□□□□ -0.82
VTI1BP3-201ENST00000550220 TRPC1P48995 793 aa9.95□□□□□ -0.82
VTI1BP3-201ENST00000550220 EMDP50402 254 aa9.95□□□□□ -0.82
VTI1BP3-201ENST00000550220 CRYZQ08257 329 aaKnown RBP9.95□□□□□ -0.82
VTI1BP3-201ENST00000550220 MYBPHQ13203 477 aa9.95□□□□□ -0.82
VTI1BP3-201ENST00000550220 EFR3AQ14156 821 aa9.95□□□□□ -0.82
VTI1BP3-201ENST00000550220 RCAN2Q14206 197 aa9.95□□□□□ -0.82
VTI1BP3-201ENST00000550220 TOMM20Q15388 145 aa9.95□□□□□ -0.82
VTI1BP3-201ENST00000550220 CCDC153Q494R4 210 aa9.95□□□□□ -0.82
VTI1BP3-201ENST00000550220 NSUN5P2Q63ZY6 315 aa9.95□□□□□ -0.82
VTI1BP3-201ENST00000550220 FAM111BQ6SJ93 734 aa9.95□□□□□ -0.82
VTI1BP3-201ENST00000550220 ARSKQ6UWY0 536 aa9.95□□□□□ -0.82
VTI1BP3-201ENST00000550220 RPS27LQ71UM5 84 aaKnown RBP9.95□□□□□ -0.82
VTI1BP3-201ENST00000550220 WDR53Q7Z5U6 358 aaPredicted RBP9.95□□□□□ -0.82
VTI1BP3-201ENST00000550220 CDH24Q86UP0 819 aa9.95□□□□□ -0.82
VTI1BP3-201ENST00000550220 CCDC116Q8IYX3 515 aa9.95□□□□□ -0.82
VTI1BP3-201ENST00000550220 OR52R1Q8NGF1 315 aa9.95□□□□□ -0.82
VTI1BP3-201ENST00000550220 ABTB1Q969K4 478 aaPredicted RBP9.95□□□□□ -0.82
VTI1BP3-201ENST00000550220 NTNG2Q96CW9 530 aa9.95□□□□□ -0.82
VTI1BP3-201ENST00000550220 OMA1Q96E52 524 aa9.95□□□□□ -0.82
VTI1BP3-201ENST00000550220 CNRIP1Q96F85 164 aaPredicted RBP9.95□□□□□ -0.82
VTI1BP3-201ENST00000550220 METTL2AQ96IZ6 378 aaKnown RBP9.95□□□□□ -0.82
VTI1BP3-201ENST00000550220 COL21A1Q96P44 957 aa9.95□□□□□ -0.82
VTI1BP3-201ENST00000550220 TMEM237Q96Q45 408 aa9.95□□□□□ -0.82
VTI1BP3-201ENST00000550220 ITPAQ9BY32 194 aa9.95□□□□□ -0.82
VTI1BP3-201ENST00000550220 ACPTQ9BZG2 426 aa9.95□□□□□ -0.82
VTI1BP3-201ENST00000550220 CALHM2Q9HA72 323 aa9.95□□□□□ -0.82
VTI1BP3-201ENST00000550220 SLC35C2Q9NQQ7 365 aa9.95□□□□□ -0.82
VTI1BP3-201ENST00000550220 TAS2R9Q9NYW1 312 aa9.95□□□□□ -0.82
VTI1BP3-201ENST00000550220 KLRF1Q9NZS2 232 aa9.95□□□□□ -0.82
VTI1BP3-201ENST00000550220 GRID1Q9ULK0 1009 aa9.95□□□□□ -0.82
VTI1BP3-201ENST00000550220 EXO1Q9UQ84 846 aaKnown RBP9.95□□□□□ -0.82
VTI1BP3-201ENST00000550220 GPR55Q9Y2T6 319 aaPredicted RBP9.95□□□□□ -0.82
VTI1BP3-201ENST00000550220 PLLPQ9Y342 182 aa9.95□□□□□ -0.82
VTI1BP3-201ENST00000550220 CD8B2A6NJW9 211 aa9.94□□□□□ -0.82
VTI1BP3-201ENST00000550220 PLOD3O60568 738 aa9.94□□□□□ -0.82
VTI1BP3-201ENST00000550220 ICOSLGO75144 302 aa9.94□□□□□ -0.82
VTI1BP3-201ENST00000550220 CRCPO75575 148 aa9.94□□□□□ -0.82
VTI1BP3-201ENST00000550220 CBX7O95931 251 aa9.94□□□□□ -0.82
VTI1BP3-201ENST00000550220 IL3P08700 152 aa9.94□□□□□ -0.82
VTI1BP3-201ENST00000550220 ANXA4P09525 319 aaPredicted RBP9.94□□□□□ -0.82
VTI1BP3-201ENST00000550220 MYL2P10916 166 aa9.94□□□□□ -0.82
VTI1BP3-201ENST00000550220 BMP7P18075 431 aa9.94□□□□□ -0.82
VTI1BP3-201ENST00000550220 PTPN6P29350 595 aa9.94□□□□□ -0.82
VTI1BP3-201ENST00000550220 TIA1P31483 386 aaKnown RBP eCLIP9.94□□□□□ -0.82
VTI1BP3-201ENST00000550220 CEACAM8P31997 349 aaPredicted RBP9.94□□□□□ -0.82
VTI1BP3-201ENST00000550220 DNAJB13P59910 316 aa9.94□□□□□ -0.82
VTI1BP3-201ENST00000550220 EEF1A1P68104 462 aaKnown RBP9.94□□□□□ -0.82
VTI1BP3-201ENST00000550220 EXOSC7Q15024 291 aaKnown RBP9.94□□□□□ -0.82
VTI1BP3-201ENST00000550220 CEBPEQ15744 281 aa9.94□□□□□ -0.82
VTI1BP3-201ENST00000550220 FBXL19-AS1Q494R0 122 aa9.94□□□□□ -0.82
VTI1BP3-201ENST00000550220 ACSF3Q4G176 576 aaPredicted RBP9.94□□□□□ -0.82
VTI1BP3-201ENST00000550220 TRMT12Q53H54 448 aaKnown RBP9.94□□□□□ -0.82
VTI1BP3-201ENST00000550220 ZNF628Q5EBL2 1059 aa9.94□□□□□ -0.82
VTI1BP3-201ENST00000550220 CFAP157Q5JU67 520 aa9.94□□□□□ -0.82
VTI1BP3-201ENST00000550220 SPDYAQ5MJ70 313 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms