RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 PCDHGA10Q9Y5H3 936 aa14.84□□□□□ -0.03
CUX1-211ENST00000546411 GFYI3L273 518 aa14.83□□□□□ -0.04
CUX1-211ENST00000546411 ZNF701M0R085 212 aaPredicted RBP14.83□□□□□ -0.04
CUX1-211ENST00000546411 ANKRD13BQ86YJ7 626 aa14.83□□□□□ -0.04
CUX1-211ENST00000546411 SLC22A4Q9H015 551 aa14.83□□□□□ -0.04
CUX1-211ENST00000546411 MBD1Q9UIS9 605 aaPredicted RBP14.83□□□□□ -0.04
CUX1-211ENST00000546411 FAM172BPA6NC97 362 aa14.83□□□□□ -0.04
CUX1-211ENST00000546411 OR6C70A6NIJ9 312 aa14.83□□□□□ -0.04
CUX1-211ENST00000546411 GFRA2O00451 464 aa14.83□□□□□ -0.04
CUX1-211ENST00000546411 ZNF888P0CJ79 500 aaPredicted RBP14.83□□□□□ -0.04
CUX1-211ENST00000546411 GRPRP30550 384 aa14.83□□□□□ -0.04
CUX1-211ENST00000546411 ISL1P61371 349 aa14.83□□□□□ -0.04
CUX1-211ENST00000546411 IKBIPQ70UQ0 350 aa14.83□□□□□ -0.04
CUX1-211ENST00000546411 RBM45Q8IUH3 476 aaKnown RBP14.83□□□□□ -0.04
CUX1-211ENST00000546411 LINC00471Q8N535 108 aa14.83□□□□□ -0.04
CUX1-211ENST00000546411 OR8K3Q8NH51 312 aa14.83□□□□□ -0.04
CUX1-211ENST00000546411 FANK1Q8TC84 345 aa14.83□□□□□ -0.04
CUX1-211ENST00000546411 NDC1Q9BTX1 674 aa14.83□□□□□ -0.04
CUX1-211ENST00000546411 ABCG4Q9H172 646 aa14.83□□□□□ -0.04
CUX1-211ENST00000546411 Q9N2J8 555 aa14.83□□□□□ -0.04
CUX1-211ENST00000546411 A0A1W2PRG6 482 aa14.83□□□□□ -0.04
CUX1-211ENST00000546411 TMEM150CB9EJG8 249 aa14.83□□□□□ -0.04
CUX1-211ENST00000546411 PLD2O14939 933 aa14.83□□□□□ -0.04
CUX1-211ENST00000546411 AGR2O95994 175 aa14.83□□□□□ -0.04
CUX1-211ENST00000546411 IL12BP29460 328 aa14.83□□□□□ -0.04
CUX1-211ENST00000546411 ZNF33BQ06732 778 aa14.83□□□□□ -0.04
CUX1-211ENST00000546411 FIGLAQ6QHK4 219 aa14.83□□□□□ -0.04
CUX1-211ENST00000546411 LINGO2Q7L985 606 aa14.83□□□□□ -0.04
CUX1-211ENST00000546411 GNPDA2Q8TDQ7 276 aa14.83□□□□□ -0.04
CUX1-211ENST00000546411 NKD1Q969G9 470 aa14.83□□□□□ -0.04
CUX1-211ENST00000546411 MCCC1Q96RQ3 725 aaPredicted RBP14.83□□□□□ -0.04
CUX1-211ENST00000546411 PHOX2BQ99453 314 aa14.83□□□□□ -0.04
CUX1-211ENST00000546411 MED28Q9H204 178 aa14.83□□□□□ -0.04
CUX1-211ENST00000546411 SMURF1Q9HCE7 757 aa14.83□□□□□ -0.04
CUX1-211ENST00000546411 LTBP1Q14766 1721 aa14.82□□□□□ -0.04
CUX1-211ENST00000546411 H3BQ06 376 aaPredicted RBP14.82□□□□□ -0.04
CUX1-211ENST00000546411 PTHP01270 115 aa14.82□□□□□ -0.04
CUX1-211ENST00000546411 TGFBR1P36897 503 aa14.82□□□□□ -0.04
CUX1-211ENST00000546411 PRDX1Q06830 199 aaKnown RBP14.82□□□□□ -0.04
CUX1-211ENST00000546411 RPA4Q13156 261 aa14.82□□□□□ -0.04
CUX1-211ENST00000546411 DSG2Q14126 1118 aa14.82□□□□□ -0.04
CUX1-211ENST00000546411 ZNF385BQ569K4 471 aa14.82□□□□□ -0.04
CUX1-211ENST00000546411 PODNL1Q6PEZ8 512 aa14.82□□□□□ -0.04
CUX1-211ENST00000546411 VRK2Q86Y07 508 aa14.82□□□□□ -0.04
CUX1-211ENST00000546411 CSNK1A1LQ8N752 337 aa14.82□□□□□ -0.04
CUX1-211ENST00000546411 OR56A3Q8NH54 315 aa14.82□□□□□ -0.04
CUX1-211ENST00000546411 TRIM63Q969Q1 353 aa14.82□□□□□ -0.04
CUX1-211ENST00000546411 SAMD8Q96LT4 415 aa14.82□□□□□ -0.04
CUX1-211ENST00000546411 ERMAPQ96PL5 475 aaPredicted RBP14.82□□□□□ -0.04
CUX1-211ENST00000546411 UHRF1Q96T88 793 aaPredicted RBP14.82□□□□□ -0.04
CUX1-211ENST00000546411 GNG8Q9UK08 70 aa14.82□□□□□ -0.04
CUX1-211ENST00000546411 GPR34Q9UPC5 381 aa14.82□□□□□ -0.04
CUX1-211ENST00000546411 PIAS3Q9Y6X2 628 aa14.82□□□□□ -0.04
CUX1-211ENST00000546411 WWP2O00308 870 aa14.82□□□□□ -0.04
CUX1-211ENST00000546411 SOX2P48431 317 aa14.82□□□□□ -0.04
CUX1-211ENST00000546411 POU6F2P78424 691 aaPredicted RBP14.82□□□□□ -0.04
CUX1-211ENST00000546411 TMEM35AQ53FP2 167 aa14.82□□□□□ -0.04
CUX1-211ENST00000546411 Q6ZNB5 142 aa14.82□□□□□ -0.04
CUX1-211ENST00000546411 ARSGQ96EG1 525 aa14.82□□□□□ -0.04
CUX1-211ENST00000546411 APOOQ9BUR5 198 aa14.82□□□□□ -0.04
CUX1-211ENST00000546411 DPH1Q9BZG8 443 aa14.82□□□□□ -0.04
CUX1-211ENST00000546411 CHIAQ9BZP6 476 aa14.82□□□□□ -0.04
CUX1-211ENST00000546411 NKX2-4Q9H2Z4 354 aa14.82□□□□□ -0.04
CUX1-211ENST00000546411 NTN4Q9HB63 628 aa14.82□□□□□ -0.04
CUX1-211ENST00000546411 TRIM36Q9NQ86 728 aa14.82□□□□□ -0.04
CUX1-211ENST00000546411 PRSS16Q9NQE7 514 aa14.82□□□□□ -0.04
CUX1-211ENST00000546411 LIPT1Q9Y234 373 aa14.82□□□□□ -0.04
CUX1-211ENST00000546411 CMAHPQ9Y471 501 aa14.82□□□□□ -0.04
CUX1-211ENST00000546411 ARAFP10398 606 aa14.82□□□□□ -0.04
CUX1-211ENST00000546411 HIST1H1TP22492 207 aaPredicted RBP14.82□□□□□ -0.04
CUX1-211ENST00000546411 EDNRAP25101 427 aa14.82□□□□□ -0.04
CUX1-211ENST00000546411 MLLT3P42568 568 aaPredicted RBP14.82□□□□□ -0.04
CUX1-211ENST00000546411 SLC6A12P48065 614 aa14.82□□□□□ -0.04
CUX1-211ENST00000546411 RGS6P49758 472 aa14.82□□□□□ -0.04
CUX1-211ENST00000546411 OR12D2P58182 307 aa14.82□□□□□ -0.04
CUX1-211ENST00000546411 ZNF45Q02386 682 aa14.82□□□□□ -0.04
CUX1-211ENST00000546411 C18orf63Q68DL7 685 aa14.82□□□□□ -0.04
CUX1-211ENST00000546411 PLAG1Q6DJT9 500 aa14.82□□□□□ -0.04
CUX1-211ENST00000546411 MEIOBQ8N635 442 aa14.82□□□□□ -0.04
CUX1-211ENST00000546411 SAMD12Q8N8I0 201 aa14.82□□□□□ -0.04
CUX1-211ENST00000546411 NELL2Q99435 816 aa14.82□□□□□ -0.04
CUX1-211ENST00000546411 VNN3Q9NY84 501 aa14.82□□□□□ -0.04
CUX1-211ENST00000546411 MARK1Q9P0L2 795 aa14.82□□□□□ -0.04
CUX1-211ENST00000546411 TBX21Q9UL17 535 aa14.82□□□□□ -0.04
CUX1-211ENST00000546411 ING4Q9UNL4 249 aa14.82□□□□□ -0.04
CUX1-211ENST00000546411 A0A1B0GVC2 190 aa14.81□□□□□ -0.04
CUX1-211ENST00000546411 A6NIN4 97 aa14.81□□□□□ -0.04
CUX1-211ENST00000546411 CDK1P06493 297 aa14.81□□□□□ -0.04
CUX1-211ENST00000546411 ITGAMP11215 1152 aa14.81□□□□□ -0.04
CUX1-211ENST00000546411 NKX3-2P78367 333 aa14.81□□□□□ -0.04
CUX1-211ENST00000546411 RELAQ04206 551 aa14.81□□□□□ -0.04
CUX1-211ENST00000546411 PON3Q15166 354 aa14.81□□□□□ -0.04
CUX1-211ENST00000546411 OR2G6Q5TZ20 316 aa14.81□□□□□ -0.04
CUX1-211ENST00000546411 MEDAGQ5VYS4 303 aa14.81□□□□□ -0.04
CUX1-211ENST00000546411 PLEKHG7Q6ZR37 379 aa14.81□□□□□ -0.04
CUX1-211ENST00000546411 USP53Q70EK8 1073 aa14.81□□□□□ -0.04
CUX1-211ENST00000546411 CPOQ8IVL8 374 aa14.81□□□□□ -0.04
CUX1-211ENST00000546411 ENTHD1Q8IYW4 607 aa14.81□□□□□ -0.04
CUX1-211ENST00000546411 PEX11GQ96HA9 241 aa14.81□□□□□ -0.04
CUX1-211ENST00000546411 UCKL1Q9NWZ5 548 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms