RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 RDH11Q8TC12 318 aa16.16■□□□□ 0.18
CLSTN3-214ENST00000542663 CCL19Q99731 98 aa16.16■□□□□ 0.18
CLSTN3-214ENST00000542663 CPNE1Q99829 537 aa16.16■□□□□ 0.18
CLSTN3-214ENST00000542663 TRIM31Q9BZY9 425 aa16.16■□□□□ 0.18
CLSTN3-214ENST00000542663 ACBD3Q9H3P7 528 aa16.16■□□□□ 0.18
CLSTN3-214ENST00000542663 UBTD1Q9HAC8 227 aa16.16■□□□□ 0.18
CLSTN3-214ENST00000542663 KLHL28Q9NXS3 571 aa16.16■□□□□ 0.18
CLSTN3-214ENST00000542663 TRPS1Q9UHF7 1281 aa16.16■□□□□ 0.18
CLSTN3-214ENST00000542663 EXO1Q9UQ84 846 aaKnown RBP16.16■□□□□ 0.18
CLSTN3-214ENST00000542663 ATRQ13535 2644 aa16.15■□□□□ 0.18
CLSTN3-214ENST00000542663 A0A1W2PNV4 684 aa16.15■□□□□ 0.18
CLSTN3-214ENST00000542663 PLOD2O00469 737 aa16.15■□□□□ 0.18
CLSTN3-214ENST00000542663 TGM6O95932 706 aa16.15■□□□□ 0.18
CLSTN3-214ENST00000542663 NAGAP17050 411 aa16.15■□□□□ 0.18
CLSTN3-214ENST00000542663 KRT15P19012 456 aa16.15■□□□□ 0.18
CLSTN3-214ENST00000542663 CNTFP26441 200 aa16.15■□□□□ 0.18
CLSTN3-214ENST00000542663 CCKARP32238 428 aa16.15■□□□□ 0.18
CLSTN3-214ENST00000542663 DIO3P55073 304 aa16.15■□□□□ 0.18
CLSTN3-214ENST00000542663 CLDN18P56856 261 aa16.15■□□□□ 0.18
CLSTN3-214ENST00000542663 MGAT2Q10469 447 aa16.15■□□□□ 0.18
CLSTN3-214ENST00000542663 GAB1Q13480 694 aa16.15■□□□□ 0.18
CLSTN3-214ENST00000542663 NUP54Q7Z3B4 507 aa16.15■□□□□ 0.18
CLSTN3-214ENST00000542663 CMC1Q7Z7K0 106 aa16.15■□□□□ 0.18
CLSTN3-214ENST00000542663 OR7G1Q8NGA0 311 aa16.15■□□□□ 0.18
CLSTN3-214ENST00000542663 WDR20Q8TBZ3 569 aa16.15■□□□□ 0.18
CLSTN3-214ENST00000542663 PIK3IP1Q96FE7 263 aa16.15■□□□□ 0.18
CLSTN3-214ENST00000542663 MARK4Q96L34 752 aa16.15■□□□□ 0.18
CLSTN3-214ENST00000542663 HS3ST6Q96QI5 342 aa16.15■□□□□ 0.18
CLSTN3-214ENST00000542663 PIGQQ9BRB3 760 aa16.15■□□□□ 0.18
CLSTN3-214ENST00000542663 ACTR8Q9H981 624 aa16.15■□□□□ 0.18
CLSTN3-214ENST00000542663 MXRA5Q9NR99 2828 aa16.15■□□□□ 0.18
CLSTN3-214ENST00000542663 CUBNO60494 3623 aa16.15■□□□□ 0.18
CLSTN3-214ENST00000542663 TCRBV9S1A1TA0A576 114 aa16.14■□□□□ 0.17
CLSTN3-214ENST00000542663 LRRC14BA6NHZ5 514 aa16.14■□□□□ 0.17
CLSTN3-214ENST00000542663 FAM159BA6NKW6 160 aa16.14■□□□□ 0.17
CLSTN3-214ENST00000542663 MSTNO14793 375 aa16.14■□□□□ 0.17
CLSTN3-214ENST00000542663 HCRTR2O43614 444 aa16.14■□□□□ 0.17
CLSTN3-214ENST00000542663 UGT2B11O75310 529 aa16.14■□□□□ 0.17
CLSTN3-214ENST00000542663 CBR3O75828 277 aa16.14■□□□□ 0.17
CLSTN3-214ENST00000542663 CPMP14384 443 aa16.14■□□□□ 0.17
CLSTN3-214ENST00000542663 FPR1P21462 350 aa16.14■□□□□ 0.17
CLSTN3-214ENST00000542663 CRYGSP22914 178 aa16.14■□□□□ 0.17
CLSTN3-214ENST00000542663 CHMP24386 653 aa16.14■□□□□ 0.17
CLSTN3-214ENST00000542663 LOXP28300 417 aaPredicted RBP16.14■□□□□ 0.17
CLSTN3-214ENST00000542663 GCKP35557 465 aa16.14■□□□□ 0.17
CLSTN3-214ENST00000542663 GP5P40197 560 aa16.14■□□□□ 0.17
CLSTN3-214ENST00000542663 PCYT1AP49585 367 aa16.14■□□□□ 0.17
CLSTN3-214ENST00000542663 XKP51811 444 aa16.14■□□□□ 0.17
CLSTN3-214ENST00000542663 NEK2P51955 445 aa16.14■□□□□ 0.17
CLSTN3-214ENST00000542663 PPP2R2BQ00005 443 aa16.14■□□□□ 0.17
CLSTN3-214ENST00000542663 SNTA1Q13424 505 aa16.14■□□□□ 0.17
CLSTN3-214ENST00000542663 CPSF6Q16630 551 aaKnown RBP eCLIP16.14■□□□□ 0.17
CLSTN3-214ENST00000542663 KBTBD12Q3ZCT8 623 aa16.14■□□□□ 0.17
CLSTN3-214ENST00000542663 VWA1Q6PCB0 445 aa16.14■□□□□ 0.17
CLSTN3-214ENST00000542663 IFNEQ86WN2 208 aa16.14■□□□□ 0.17
CLSTN3-214ENST00000542663 OR4K14Q8NGD5 310 aa16.14■□□□□ 0.17
CLSTN3-214ENST00000542663 STARD4Q96DR4 205 aa16.14■□□□□ 0.17
CLSTN3-214ENST00000542663 OMA1Q96E52 524 aa16.14■□□□□ 0.17
CLSTN3-214ENST00000542663 ITPAQ9BY32 194 aa16.14■□□□□ 0.17
CLSTN3-214ENST00000542663 NMRAL1Q9HBL8 299 aa16.14■□□□□ 0.17
CLSTN3-214ENST00000542663 PSD3Q9NYI0 1048 aa16.14■□□□□ 0.17
CLSTN3-214ENST00000542663 EHD3Q9NZN3 535 aa16.14■□□□□ 0.17
CLSTN3-214ENST00000542663 KLRF1Q9NZS2 232 aa16.14■□□□□ 0.17
CLSTN3-214ENST00000542663 TXNDC16Q9P2K2 825 aa16.14■□□□□ 0.17
CLSTN3-214ENST00000542663 ROS1P08922 2347 aa16.13■□□□□ 0.17
CLSTN3-214ENST00000542663 B4DXG7 233 aa16.13■□□□□ 0.17
CLSTN3-214ENST00000542663 ZNF708P17019 499 aa16.13■□□□□ 0.17
CLSTN3-214ENST00000542663 NT5EP21589 574 aa16.13■□□□□ 0.17
CLSTN3-214ENST00000542663 CD79BP40259 229 aa16.13■□□□□ 0.17
CLSTN3-214ENST00000542663 PHEXP78562 749 aa16.13■□□□□ 0.17
CLSTN3-214ENST00000542663 EXOSC7Q15024 291 aaKnown RBP16.13■□□□□ 0.17
CLSTN3-214ENST00000542663 PRICKLE4Q2TBC4 344 aa16.13■□□□□ 0.17
CLSTN3-214ENST00000542663 FAM111BQ6SJ93 734 aa16.13■□□□□ 0.17
CLSTN3-214ENST00000542663 GRAMD2AQ8IUY3 354 aa16.13■□□□□ 0.17
CLSTN3-214ENST00000542663 IGFBPL1Q8WX77 278 aa16.13■□□□□ 0.17
CLSTN3-214ENST00000542663 CDKL2Q92772 493 aa16.13■□□□□ 0.17
CLSTN3-214ENST00000542663 TAS2R10Q9NYW0 307 aa16.13■□□□□ 0.17
CLSTN3-214ENST00000542663 RNF11Q9Y3C5 154 aa16.13■□□□□ 0.17
CLSTN3-214ENST00000542663 PRAMEF25A6NGN4 478 aa16.12■□□□□ 0.17
CLSTN3-214ENST00000542663 FOXE1O00358 373 aaPredicted RBP16.12■□□□□ 0.17
CLSTN3-214ENST00000542663 UGDHO60701 494 aa16.12■□□□□ 0.17
CLSTN3-214ENST00000542663 SMNDC1O75940 238 aaKnown RBP eCLIP16.12■□□□□ 0.17
CLSTN3-214ENST00000542663 CNOT4O95628 575 aaKnown RBP16.12■□□□□ 0.17
CLSTN3-214ENST00000542663 LTA4HP09960 611 aaKnown RBP16.12■□□□□ 0.17
CLSTN3-214ENST00000542663 PORP16435 677 aaPredicted RBP16.12■□□□□ 0.17
CLSTN3-214ENST00000542663 PIK3CGP48736 1102 aa16.12■□□□□ 0.17
CLSTN3-214ENST00000542663 EEF1A1P68104 462 aaKnown RBP16.12■□□□□ 0.17
CLSTN3-214ENST00000542663 PLCXD2Q0VAA5 305 aa16.12■□□□□ 0.17
CLSTN3-214ENST00000542663 EEF1A1P5Q5VTE0 462 aa16.12■□□□□ 0.17
CLSTN3-214ENST00000542663 ZNF474Q6S9Z5 364 aaPredicted RBP16.12■□□□□ 0.17
CLSTN3-214ENST00000542663 SCIMPQ6UWF3 145 aa16.12■□□□□ 0.17
CLSTN3-214ENST00000542663 C22orf34Q6ZV56 151 aa16.12■□□□□ 0.17
CLSTN3-214ENST00000542663 L3MBTL4Q8NA19 623 aa16.12■□□□□ 0.17
CLSTN3-214ENST00000542663 PYROXD1Q8WU10 500 aa16.12■□□□□ 0.17
CLSTN3-214ENST00000542663 NXNL1Q96CM4 212 aa16.12■□□□□ 0.17
CLSTN3-214ENST00000542663 REPS1Q96D71 796 aa16.12■□□□□ 0.17
CLSTN3-214ENST00000542663 LCORQ96JN0 433 aaPredicted RBP16.12■□□□□ 0.17
CLSTN3-214ENST00000542663 GSX2Q9BZM3 304 aa16.12■□□□□ 0.17
CLSTN3-214ENST00000542663 ZNF226Q9NYT6 803 aa16.12■□□□□ 0.17
CLSTN3-214ENST00000542663 MAT2BQ9NZL9 334 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms