RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 ISYNA1Q9NPH2 558 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 A0A087WV62 115 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 SAGE2PA6NJ88 616 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 OR52A4PA6NMU1 304 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 TNFRSF10AO00220 468 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 AIREO43918 545 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 OR10H3O60404 316 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 EGFP01133 1207 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 ALPPP05187 535 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 HMGN2P05204 90 aaKnown RBP9.28□□□□□ -0.92
SS18-205ENST00000542420 SERPIND1P05546 499 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 ALOX5P09917 674 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 TLX1P31314 330 aaPredicted RBP9.28□□□□□ -0.92
SS18-205ENST00000542420 CSTF2P33240 577 aaKnown RBP eCLIP9.28□□□□□ -0.92
SS18-205ENST00000542420 CNR2P34972 360 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 RABIFP47224 123 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 GSSP48637 474 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 XKP51811 444 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 CASP9P55211 416 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 PPP2CBP62714 309 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 RPS26P62854 115 aaKnown RBP9.28□□□□□ -0.92
SS18-205ENST00000542420 PPP2CAP67775 309 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 ST3GAL4Q11206 333 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 GANABQ14697 944 aaKnown RBP9.28□□□□□ -0.92
SS18-205ENST00000542420 COL19A1Q14993 1142 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 SYPL1Q16563 259 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 RGS21Q2M5E4 152 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 ENPP7Q6UWV6 458 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 USP53Q70EK8 1073 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 ABHD13Q7L211 337 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 VN1R4Q7Z5H5 301 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 PLD3Q8IV08 490 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 LACC1Q8IV20 430 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 LRRC25Q8N386 305 aaPredicted RBP9.28□□□□□ -0.92
SS18-205ENST00000542420 SLC15A4Q8N697 577 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 AMER2Q8N7J2 671 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 NUP43Q8NFH3 380 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 GNPDA2Q8TDQ7 276 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 XAGE5Q8WWM1 108 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 KLHL6Q8WZ60 621 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 KLK6Q92876 244 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 ZHX1-C8orf76Q96EF9 292 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 OR7D2Q96RA2 312 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 SLIRPQ9GZT3 109 aaKnown RBP9.28□□□□□ -0.92
SS18-205ENST00000542420 POLE3Q9NRF9 147 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 QPCTLQ9NXS2 382 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 KLHL28Q9NXS3 571 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 SPHK1Q9NYA1 384 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 TRPC4Q9UBN4 977 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 TBC1D29Q9UFV1 150 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 KLHL3Q9UH77 587 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 MOSPD1Q9UJG1 213 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 PLEKHM1Q9Y4G2 1056 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 CACNA1IQ9P0X4 2223 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 GIMAP1-GIMAP5A0A087WTJ2 511 aa9.27□□□□□ -0.92
SS18-205ENST00000542420 KIR2DS5A0A0G2JLQ3 304 aa9.27□□□□□ -0.92
SS18-205ENST00000542420 A0A0G2JNG1 304 aa9.27□□□□□ -0.92
SS18-205ENST00000542420 ISPDA4D126 451 aa9.27□□□□□ -0.92
SS18-205ENST00000542420 C4orf51C9J302 202 aa9.27□□□□□ -0.92
SS18-205ENST00000542420 KIR2DS3K7RE56 304 aa9.27□□□□□ -0.92
SS18-205ENST00000542420 NME6O75414 186 aaPredicted RBP9.27□□□□□ -0.92
SS18-205ENST00000542420 NADKO95544 446 aaPredicted RBP9.27□□□□□ -0.92
SS18-205ENST00000542420 LCKP06239 509 aa9.27□□□□□ -0.92
SS18-205ENST00000542420 THBS1P07996 1170 aa9.27□□□□□ -0.92
SS18-205ENST00000542420 CHRM4P08173 479 aa9.27□□□□□ -0.92
SS18-205ENST00000542420 CD72P21854 359 aa9.27□□□□□ -0.92
SS18-205ENST00000542420 CERS1P27544 350 aa9.27□□□□□ -0.92
SS18-205ENST00000542420 ALDH4A1P30038 563 aa9.27□□□□□ -0.92
SS18-205ENST00000542420 OPRL1P41146 370 aa9.27□□□□□ -0.92
SS18-205ENST00000542420 SOX9P48436 509 aa9.27□□□□□ -0.92
SS18-205ENST00000542420 CLK1P49759 484 aaKnown RBP9.27□□□□□ -0.92
SS18-205ENST00000542420 FUT5Q11128 374 aa9.27□□□□□ -0.92
SS18-205ENST00000542420 KIR2DS5Q14953 304 aa9.27□□□□□ -0.92
SS18-205ENST00000542420 NR1D2Q14995 579 aa9.27□□□□□ -0.92
SS18-205ENST00000542420 TRAM2Q15035 370 aa9.27□□□□□ -0.92
SS18-205ENST00000542420 EIPR1Q53HC9 387 aa9.27□□□□□ -0.92
SS18-205ENST00000542420 CLDN22Q8N7P3 220 aa9.27□□□□□ -0.92
SS18-205ENST00000542420 AVL9Q8NBF6 648 aa9.27□□□□□ -0.92
SS18-205ENST00000542420 MORN4Q8NDC4 146 aa9.27□□□□□ -0.92
SS18-205ENST00000542420 B3GNT7Q8NFL0 401 aa9.27□□□□□ -0.92
SS18-205ENST00000542420 UBE2FQ969M7 185 aa9.27□□□□□ -0.92
SS18-205ENST00000542420 GTPBP3Q969Y2 492 aaKnown RBP9.27□□□□□ -0.92
SS18-205ENST00000542420 GIMAP5Q96F15 307 aa9.27□□□□□ -0.92
SS18-205ENST00000542420 MRGPRX1Q96LB2 322 aa9.27□□□□□ -0.92
SS18-205ENST00000542420 BMFQ96LC9 184 aa9.27□□□□□ -0.92
SS18-205ENST00000542420 CACYBPQ9HB71 228 aaKnown RBP9.27□□□□□ -0.92
SS18-205ENST00000542420 MED17Q9NVC6 651 aa9.27□□□□□ -0.92
SS18-205ENST00000542420 ZNF624Q9P2J8 865 aaPredicted RBP9.27□□□□□ -0.92
SS18-205ENST00000542420 PILRAQ9UKJ1 303 aa9.27□□□□□ -0.92
SS18-205ENST00000542420 SATB2Q9UPW6 733 aa9.27□□□□□ -0.92
SS18-205ENST00000542420 RBMX2Q9Y388 322 aaKnown RBP9.27□□□□□ -0.92
SS18-205ENST00000542420 N6AMT1Q9Y5N5 214 aa9.27□□□□□ -0.92
SS18-205ENST00000542420 CORINQ9Y5Q5 1042 aa9.27□□□□□ -0.92
SS18-205ENST00000542420 SPACA6W5XKT8 324 aa9.27□□□□□ -0.92
SS18-205ENST00000542420 BLACEA4D250 179 aa9.27□□□□□ -0.93
SS18-205ENST00000542420 ANTXRLA6NF34 631 aa9.27□□□□□ -0.93
SS18-205ENST00000542420 METTL15A6NJ78 407 aa9.27□□□□□ -0.93
SS18-205ENST00000542420 B3GALT2O43825 422 aa9.27□□□□□ -0.93
SS18-205ENST00000542420 TP53P04637 393 aaPredicted RBP9.27□□□□□ -0.93
SS18-205ENST00000542420 TCEA1P23193 301 aaKnown RBP9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms