RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, human

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-209	ENST00000542286	ATG2A	Q2TAZ0	1938 aa		13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	TBC1D3D	A0A087WVF3	549 aa		13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	TBC1D3I	A0A087WXS9	549 aa		13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	TBC1D3E	A0A087X179	549 aa		13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	TBC1D3K	A0A087X1G2	549 aa		13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	TBC1D3F	A6NER0	549 aa	Predicted RBP	13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	TBC1D3L	B9A6J9	549 aa		13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	SEMA3D	O95025	777 aa		13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	TBC1D3H	P0C7X1	549 aa		13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	NR2F1	P10589	423 aa		13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	ITGA2	P17301	1181 aa		13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	HOXB6	P17509	224 aa	Known RBP	13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	RPL3	P39023	403 aa	Known RBP	13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	SOX3	P41225	446 aa		13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	TGM4	P49221	684 aa		13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	PRDX1	Q06830	199 aa	Known RBP	13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	HYAL2	Q12891	473 aa		13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	TARDBP	Q13148	414 aa	Known RBP eCLIP	13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	C10orf62	Q5T681	223 aa	Predicted RBP	13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	TBC1D3G	Q6DHY5	549 aa		13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	TBC1D3C	Q6IPX1	549 aa		13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	PRR23C	Q6ZRP0	262 aa		13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	IKBIP	Q70UQ0	350 aa		13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	BPHL	Q86WA6	291 aa	Predicted RBP	13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	SLC38A6	Q8IZM9	456 aa		13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	TBC1D3	Q8IZP1	549 aa	Predicted RBP	13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	CADM2	Q8N3J6	435 aa		13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	KCT2	Q8NC54	265 aa		13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	IPCEF1	Q8WWN9	437 aa	Predicted RBP	13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	KAT2A	Q92830	837 aa		13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	CNRIP1	Q96F85	164 aa	Predicted RBP	13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	AMDHD1	Q96NU7	426 aa		13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	TMEM74B	Q9NUR3	256 aa		13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	GIMAP4	Q9NUV9	329 aa		13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	A3GALT2	U3KPV4	340 aa		13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	CHRM4	P08173	479 aa		13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	IGFALS	P35858	605 aa		13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	BUD31	P41223	144 aa	Predicted RBP	13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	MLLT1	Q03111	559 aa	Predicted RBP	13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	FUT5	Q11128	374 aa		13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	TST	Q16762	297 aa	Known RBP	13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	NRARP	Q7Z6K4	114 aa		13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	OR4N5	Q8IXE1	308 aa		13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	ELMOD2	Q8IZ81	293 aa		13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	WDR36	Q8NI36	951 aa	Known RBP	13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	POP5	Q969H6	163 aa	Known RBP	13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	NXF2	Q9GZY0	626 aa	Known RBP	13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	MKLN1	Q9UL63	735 aa		13.93	□□□□□ -0.18
DDX55-209	ENST00000542286	ERVH48-1	M5A8F1	160 aa		13.92	□□□□□ -0.18
DDX55-209	ENST00000542286	HMGN2	P05204	90 aa	Known RBP	13.92	□□□□□ -0.18
DDX55-209	ENST00000542286	DDOST	P39656	456 aa		13.92	□□□□□ -0.18
DDX55-209	ENST00000542286	MAP4K2	Q12851	820 aa		13.92	□□□□□ -0.18
DDX55-209	ENST00000542286	RPA4	Q13156	261 aa		13.92	□□□□□ -0.18
DDX55-209	ENST00000542286	SGCG	Q13326	291 aa		13.92	□□□□□ -0.18
DDX55-209	ENST00000542286	SPANXN2	Q5MJ10	180 aa		13.92	□□□□□ -0.18
DDX55-209	ENST00000542286	SPERT	Q8NA61	448 aa		13.92	□□□□□ -0.18
DDX55-209	ENST00000542286	ANKK1	Q8NFD2	765 aa		13.92	□□□□□ -0.18
DDX55-209	ENST00000542286	OR6T1	Q8NGN1	323 aa		13.92	□□□□□ -0.18
DDX55-209	ENST00000542286	TRIM63	Q969Q1	353 aa		13.92	□□□□□ -0.18
DDX55-209	ENST00000542286	NEDD4L	Q96PU5	975 aa		13.92	□□□□□ -0.18
DDX55-209	ENST00000542286	BBS4	Q96RK4	519 aa		13.92	□□□□□ -0.18
DDX55-209	ENST00000542286	RSPH9	Q9H1X1	276 aa	Predicted RBP	13.92	□□□□□ -0.18
DDX55-209	ENST00000542286	PELI2	Q9HAT8	420 aa		13.92	□□□□□ -0.18
DDX55-209	ENST00000542286	MRPS30	Q9NP92	439 aa	Known RBP	13.92	□□□□□ -0.18
DDX55-209	ENST00000542286	RPRD1B	Q9NQG5	326 aa	Known RBP	13.92	□□□□□ -0.18
DDX55-209	ENST00000542286	REV1	Q9UBZ9	1251 aa		13.92	□□□□□ -0.18
DDX55-209	ENST00000542286	VPS13A	Q96RL7	3174 aa		13.92	□□□□□ -0.18
DDX55-209	ENST00000542286		A0A0A6YYD5	115 aa		13.92	□□□□□ -0.18
DDX55-209	ENST00000542286	SMIM30	A4D0T7	59 aa		13.92	□□□□□ -0.18
DDX55-209	ENST00000542286	BTN3A3	O00478	584 aa		13.92	□□□□□ -0.18
DDX55-209	ENST00000542286	DPM1	O60762	260 aa		13.92	□□□□□ -0.18
DDX55-209	ENST00000542286	IFNA14	P01570	189 aa		13.92	□□□□□ -0.18
DDX55-209	ENST00000542286	PCSK2	P16519	638 aa		13.92	□□□□□ -0.18
DDX55-209	ENST00000542286	RAB28	P51157	221 aa		13.92	□□□□□ -0.18
DDX55-209	ENST00000542286	DUSP6	Q16828	381 aa		13.92	□□□□□ -0.18
DDX55-209	ENST00000542286	TBRG1	Q3YBR2	411 aa		13.92	□□□□□ -0.18
DDX55-209	ENST00000542286		Q5BKY6	102 aa		13.92	□□□□□ -0.18
DDX55-209	ENST00000542286	ZNF438	Q7Z4V0	828 aa		13.92	□□□□□ -0.18
DDX55-209	ENST00000542286	TCEANC	Q8N8B7	351 aa		13.92	□□□□□ -0.18
DDX55-209	ENST00000542286	GRPEL2	Q8TAA5	225 aa		13.92	□□□□□ -0.18
DDX55-209	ENST00000542286	COL26A1	Q96A83	441 aa		13.92	□□□□□ -0.18
DDX55-209	ENST00000542286	SLC35G5	Q96KT7	338 aa		13.92	□□□□□ -0.18
DDX55-209	ENST00000542286	SLA2	Q9H6Q3	261 aa		13.92	□□□□□ -0.18
DDX55-209	ENST00000542286	ERVK13-1	Q9NX77	482 aa		13.92	□□□□□ -0.18
DDX55-209	ENST00000542286	DPP7	Q9UHL4	492 aa		13.92	□□□□□ -0.18
DDX55-209	ENST00000542286	SATB2	Q9UPW6	733 aa		13.92	□□□□□ -0.18
DDX55-209	ENST00000542286	GPR55	Q9Y2T6	319 aa	Predicted RBP	13.92	□□□□□ -0.18
DDX55-209	ENST00000542286	LOC105378220	A0A1B0GUY1	285 aa	Predicted RBP	13.91	□□□□□ -0.18
DDX55-209	ENST00000542286	ISM1	B1AKI9	464 aa		13.91	□□□□□ -0.18
DDX55-209	ENST00000542286	SNX4	O95219	450 aa		13.91	□□□□□ -0.18
DDX55-209	ENST00000542286	COL9A1	P20849	921 aa		13.91	□□□□□ -0.18
DDX55-209	ENST00000542286	SLC15A1	P46059	708 aa		13.91	□□□□□ -0.18
DDX55-209	ENST00000542286	OLR1	P78380	273 aa		13.91	□□□□□ -0.18
DDX55-209	ENST00000542286	ID2	Q02363	134 aa		13.91	□□□□□ -0.18
DDX55-209	ENST00000542286	TOR1AIP1	Q5JTV8	583 aa		13.91	□□□□□ -0.18
DDX55-209	ENST00000542286	DCST1	Q5T197	706 aa		13.91	□□□□□ -0.18
DDX55-209	ENST00000542286	ACOT4	Q8N9L9	421 aa		13.91	□□□□□ -0.18
DDX55-209	ENST00000542286	OR9A2	Q8NGT5	310 aa		13.91	□□□□□ -0.18
DDX55-209	ENST00000542286	MYDGF	Q969H8	173 aa		13.91	□□□□□ -0.18
DDX55-209	ENST00000542286	TSACC	Q96A04	125 aa	Predicted RBP	13.91	□□□□□ -0.18

Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms