RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 CCNJQ5T5M9 372 aa11.46□□□□□ -0.57
AP003559.1-201ENST00000540906 CDC73Q6P1J9 531 aa11.46□□□□□ -0.57
AP003559.1-201ENST00000540906 PRSS42Q7Z5A4 293 aa11.46□□□□□ -0.57
AP003559.1-201ENST00000540906 ZNF605Q86T29 641 aa11.46□□□□□ -0.57
AP003559.1-201ENST00000540906 PLXDC1Q8IUK5 500 aa11.46□□□□□ -0.57
AP003559.1-201ENST00000540906 AMER2Q8N7J2 671 aa11.46□□□□□ -0.57
AP003559.1-201ENST00000540906 VANGL1Q8TAA9 524 aaPredicted RBP11.46□□□□□ -0.57
AP003559.1-201ENST00000540906 GEMIN6Q8WXD5 167 aaKnown RBP11.46□□□□□ -0.57
AP003559.1-201ENST00000540906 SLC9A6Q92581 669 aa11.46□□□□□ -0.57
AP003559.1-201ENST00000540906 CTHRC1Q96CG8 243 aa11.46□□□□□ -0.57
AP003559.1-201ENST00000540906 RBM4BQ9BQ04 359 aaKnown RBP11.46□□□□□ -0.57
AP003559.1-201ENST00000540906 RBM4Q9BWF3 364 aaKnown RBP11.46□□□□□ -0.57
AP003559.1-201ENST00000540906 BCL2L10Q9HD36 194 aa11.46□□□□□ -0.57
AP003559.1-201ENST00000540906 C8orf4Q9NR00 106 aa11.46□□□□□ -0.57
AP003559.1-201ENST00000540906 CUTCQ9NTM9 273 aa11.46□□□□□ -0.57
AP003559.1-201ENST00000540906 RLIMQ9NVW2 624 aa11.46□□□□□ -0.57
AP003559.1-201ENST00000540906 FBXO34Q9NWN3 711 aa11.46□□□□□ -0.57
AP003559.1-201ENST00000540906 ZNF749O43361 778 aa11.46□□□□□ -0.58
AP003559.1-201ENST00000540906 SMNDC1O75940 238 aaKnown RBP eCLIP11.46□□□□□ -0.58
AP003559.1-201ENST00000540906 SEC24DO94855 1032 aaPredicted RBP11.46□□□□□ -0.58
AP003559.1-201ENST00000540906 EPHA2P29317 976 aa11.46□□□□□ -0.58
AP003559.1-201ENST00000540906 SPIBQ01892 262 aa11.46□□□□□ -0.58
AP003559.1-201ENST00000540906 KCNAB2Q13303 367 aa11.46□□□□□ -0.58
AP003559.1-201ENST00000540906 NR0B2Q15466 257 aa11.46□□□□□ -0.58
AP003559.1-201ENST00000540906 EXOC3L2Q2M3D2 409 aa11.46□□□□□ -0.58
AP003559.1-201ENST00000540906 TRIM61Q5EBN2 209 aa11.46□□□□□ -0.58
AP003559.1-201ENST00000540906 TCEAL6Q6IPX3 200 aa11.46□□□□□ -0.58
AP003559.1-201ENST00000540906 HEPHL1Q6MZM0 1159 aa11.46□□□□□ -0.58
AP003559.1-201ENST00000540906 BHLHB9Q6PI77 547 aa11.46□□□□□ -0.58
AP003559.1-201ENST00000540906 WDR74Q6RFH5 385 aaPredicted RBP11.46□□□□□ -0.58
AP003559.1-201ENST00000540906 TTLL10Q6ZVT0 673 aa11.46□□□□□ -0.58
AP003559.1-201ENST00000540906 C11orf74Q86VG3 221 aa11.46□□□□□ -0.58
AP003559.1-201ENST00000540906 VRK2Q86Y07 508 aa11.46□□□□□ -0.58
AP003559.1-201ENST00000540906 HIPK1Q86Z02 1210 aa11.46□□□□□ -0.58
AP003559.1-201ENST00000540906 RCBTB1Q8NDN9 531 aa11.46□□□□□ -0.58
AP003559.1-201ENST00000540906 OR51Q1Q8NH59 317 aa11.46□□□□□ -0.58
AP003559.1-201ENST00000540906 BBS10Q8TAM1 723 aa11.46□□□□□ -0.58
AP003559.1-201ENST00000540906 LZICQ8WZA0 190 aa11.46□□□□□ -0.58
AP003559.1-201ENST00000540906 PIK3R3Q92569 461 aa11.46□□□□□ -0.58
AP003559.1-201ENST00000540906 TCEAL3Q969E4 200 aa11.46□□□□□ -0.58
AP003559.1-201ENST00000540906 SDCCAG3Q96C92 435 aa11.46□□□□□ -0.58
AP003559.1-201ENST00000540906 PRR14Q9BWN1 585 aa11.46□□□□□ -0.58
AP003559.1-201ENST00000540906 REEP1Q9H902 201 aa11.46□□□□□ -0.58
AP003559.1-201ENST00000540906 NECTIN3Q9NQS3 549 aa11.46□□□□□ -0.58
AP003559.1-201ENST00000540906 EXD2Q9NVH0 621 aa11.46□□□□□ -0.58
AP003559.1-201ENST00000540906 FAM118AQ9NWS6 357 aa11.46□□□□□ -0.58
AP003559.1-201ENST00000540906 GIN1Q9NXP7 522 aa11.46□□□□□ -0.58
AP003559.1-201ENST00000540906 PTGFRNQ9P2B2 879 aa11.46□□□□□ -0.58
AP003559.1-201ENST00000540906 FBXO4Q9UKT5 387 aa11.46□□□□□ -0.58
AP003559.1-201ENST00000540906 GPR55Q9Y2T6 319 aaPredicted RBP11.46□□□□□ -0.58
AP003559.1-201ENST00000540906 ENPP4Q9Y6X5 453 aa11.46□□□□□ -0.58
AP003559.1-201ENST00000540906 DSPPQ9NZW4 1301 aa11.46□□□□□ -0.58
AP003559.1-201ENST00000540906 GXYLT2A0PJZ3 443 aa11.45□□□□□ -0.58
AP003559.1-201ENST00000540906 A8MVJ9 347 aa11.45□□□□□ -0.58
AP003559.1-201ENST00000540906 TNFRSF11BO00300 401 aa11.45□□□□□ -0.58
AP003559.1-201ENST00000540906 PCDH17O14917 1159 aa11.45□□□□□ -0.58
AP003559.1-201ENST00000540906 FRS3O43559 492 aa11.45□□□□□ -0.58
AP003559.1-201ENST00000540906 PLOD3O60568 738 aa11.45□□□□□ -0.58
AP003559.1-201ENST00000540906 DPM1O60762 260 aa11.45□□□□□ -0.58
AP003559.1-201ENST00000540906 DNAJB5O75953 348 aa11.45□□□□□ -0.58
AP003559.1-201ENST00000540906 IFNA14P01570 189 aa11.45□□□□□ -0.58
AP003559.1-201ENST00000540906 SP9P0CG40 484 aa11.45□□□□□ -0.58
AP003559.1-201ENST00000540906 SLC35E2P0CK97 266 aa11.45□□□□□ -0.58
AP003559.1-201ENST00000540906 CYP4B1P13584 511 aa11.45□□□□□ -0.58
AP003559.1-201ENST00000540906 HOXB6P17509 224 aaKnown RBP11.45□□□□□ -0.58
AP003559.1-201ENST00000540906 LIMS1P48059 325 aa11.45□□□□□ -0.58
AP003559.1-201ENST00000540906 RNF144AP50876 292 aaPredicted RBP11.45□□□□□ -0.58
AP003559.1-201ENST00000540906 CRISP3P54108 245 aa11.45□□□□□ -0.58
AP003559.1-201ENST00000540906 FOXL2P58012 376 aa11.45□□□□□ -0.58
AP003559.1-201ENST00000540906 IGLV3-21P80748 117 aaPredicted RBP11.45□□□□□ -0.58
AP003559.1-201ENST00000540906 SLC13A2Q13183 592 aa11.45□□□□□ -0.58
AP003559.1-201ENST00000540906 GRM7Q14831 915 aa11.45□□□□□ -0.58
AP003559.1-201ENST00000540906 NPTX1Q15818 432 aa11.45□□□□□ -0.58
AP003559.1-201ENST00000540906 TCTE1Q5JU00 501 aa11.45□□□□□ -0.58
AP003559.1-201ENST00000540906 GARNL3Q5VVW2 1013 aa11.45□□□□□ -0.58
AP003559.1-201ENST00000540906 KDM4DQ6B0I6 523 aa11.45□□□□□ -0.58
AP003559.1-201ENST00000540906 TCTN3Q6NUS6 607 aa11.45□□□□□ -0.58
AP003559.1-201ENST00000540906 FAHD1Q6P587 224 aa11.45□□□□□ -0.58
AP003559.1-201ENST00000540906 ZC3H14Q6PJT7 736 aaKnown RBP11.45□□□□□ -0.58
AP003559.1-201ENST00000540906 FRRS1Q6ZNA5 592 aa11.45□□□□□ -0.58
AP003559.1-201ENST00000540906 PRR23CQ6ZRP0 262 aa11.45□□□□□ -0.58
AP003559.1-201ENST00000540906 SAMD14Q8IZD0 417 aaPredicted RBP11.45□□□□□ -0.58
AP003559.1-201ENST00000540906 OR6C4Q8NGE1 309 aa11.45□□□□□ -0.58
AP003559.1-201ENST00000540906 ZNF675Q8TD23 568 aa11.45□□□□□ -0.58
AP003559.1-201ENST00000540906 ADAMTS15Q8TE58 950 aa11.45□□□□□ -0.58
AP003559.1-201ENST00000540906 ZNF501Q96CX3 271 aaPredicted RBP11.45□□□□□ -0.58
AP003559.1-201ENST00000540906 MUS81Q96NY9 551 aa11.45□□□□□ -0.58
AP003559.1-201ENST00000540906 EPYCQ99645 322 aa11.45□□□□□ -0.58
AP003559.1-201ENST00000540906 EPB41L1Q9H4G0 881 aa11.45□□□□□ -0.58
AP003559.1-201ENST00000540906 ZNF768Q9H5H4 540 aaKnown RBP11.45□□□□□ -0.58
AP003559.1-201ENST00000540906 PRTFDC1Q9NRG1 225 aa11.45□□□□□ -0.58
AP003559.1-201ENST00000540906 LANCL2Q9NS86 450 aa11.45□□□□□ -0.58
AP003559.1-201ENST00000540906 ACER3Q9NUN7 267 aa11.45□□□□□ -0.58
AP003559.1-201ENST00000540906 IFT80Q9P2H3 777 aaPredicted RBP11.45□□□□□ -0.58
AP003559.1-201ENST00000540906 SEC14L3Q9UDX4 400 aa11.45□□□□□ -0.58
AP003559.1-201ENST00000540906 BAG5Q9UL15 447 aa11.45□□□□□ -0.58
AP003559.1-201ENST00000540906 DTX4Q9Y2E6 619 aa11.45□□□□□ -0.58
AP003559.1-201ENST00000540906 NPIPA5A0A0B4J1W7 369 aa11.44□□□□□ -0.58
AP003559.1-201ENST00000540906 CLDN24A6NM45 220 aa11.44□□□□□ -0.58
AP003559.1-201ENST00000540906 NPIPA7E9PJI5 369 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms