RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 ZNF26P17031 533 aaPredicted RBP8.36□□□□□ -1.07
YBX3-208ENST00000540447 PSMB1P20618 241 aaKnown RBP8.36□□□□□ -1.07
YBX3-208ENST00000540447 EDNRBP24530 442 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 APEX1P27695 318 aaKnown RBP8.36□□□□□ -1.07
YBX3-208ENST00000540447 SNCAP37840 140 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 HAAOP46952 286 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 CAV2P51636 162 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 HNRNPA3P51991 378 aaKnown RBP8.36□□□□□ -1.07
YBX3-208ENST00000540447 TLE4Q04727 773 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 SLC5A8Q8N695 610 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 POM121Q96HA1 1249 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 DDOQ99489 341 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 I6L893 689 aaPredicted RBP8.36□□□□□ -1.07
YBX3-208ENST00000540447 KCNJ13O60928 360 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 PBX2P40425 430 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 MC3RP41968 323 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 HMGCS2P54868 508 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 OC90Q02509 493 aaPredicted RBP8.36□□□□□ -1.07
YBX3-208ENST00000540447 FABP9Q0Z7S8 132 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 TNK1Q13470 666 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 ASAH1Q13510 395 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 CST9LP1Q5W188 147 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 NPAS3Q8IXF0 933 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 TCTE3Q8IZS6 198 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 GPR26Q8NDV2 337 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 HASPINQ8TF76 798 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 BORCS6Q96GS4 357 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 AHCYL2Q96HN2 611 aaKnown RBP8.36□□□□□ -1.07
YBX3-208ENST00000540447 SIGLEC10Q96LC7 697 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 TMEM175Q9BSA9 504 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 ZDHHC6Q9H6R6 413 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 FN3KRPQ9HA64 309 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 CENPMQ9NSP4 180 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 LAMP5Q9UJQ1 280 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 MAPK8P45983 427 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 ACY1Q03154 408 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 LBHQ53QV2 105 aaPredicted RBP8.36□□□□□ -1.07
YBX3-208ENST00000540447 DPPA4Q7L190 304 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 NIPA1Q7RTP0 329 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 OR2T33Q8NG76 320 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 OR56A3Q8NH54 315 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 TMEM18Q96B42 140 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 INTS14Q96SY0 518 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 RASD1Q9Y272 281 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 FAM96BQ9Y3D0 163 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 BAZ2BQ9UIF8 2168 aaKnown RBP8.36□□□□□ -1.07
YBX3-208ENST00000540447 MDFIC2A0A1B0GVS7 189 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 MANBAO00462 879 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 SIGLEC6O43699 453 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 ALPPL2P10696 532 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 TNFSF9P41273 254 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 MAPK9P45984 424 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 DSC2Q02487 901 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 MBTPS1Q14703 1052 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 ABRAXAS2Q15018 415 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 CTXN3Q4LDR2 81 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 NHSL2Q5HYW2 709 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 SHFQ7M4L6 423 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 CPA6Q8N4T0 437 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 OR13C2Q8NGS9 318 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 DTD1Q8TEA8 209 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 PXMP2Q9NR77 195 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 THSD1Q9NS62 852 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 TMEM100Q9NV29 134 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 ZNF701Q9NV72 531 aaPredicted RBP8.36□□□□□ -1.07
YBX3-208ENST00000540447 CNOT2Q9NZN8 540 aaKnown RBP8.36□□□□□ -1.07
YBX3-208ENST00000540447 HSFX1Q9UBD0 423 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 PCDHB9Q9Y5E1 797 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 A2ML1A8K2U0 1454 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 DCDC2BA2VCK2 349 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 TFPIP10646 304 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 C6P13671 934 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 CPOXP36551 454 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 PCBP1Q15365 356 aaKnown RBP eCLIP8.36□□□□□ -1.07
YBX3-208ENST00000540447 RAB11BQ15907 218 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 ZNF239Q16600 458 aaKnown RBP8.36□□□□□ -1.07
YBX3-208ENST00000540447 ATXN7L2Q5T6C5 722 aaPredicted RBP8.36□□□□□ -1.07
YBX3-208ENST00000540447 GOLGA7Q7Z5G4 137 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 PDZD3Q86UT5 571 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 YAF2Q8IY57 180 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 ANKLE1Q8NAG6 615 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 CMASQ8NFW8 434 aaPredicted RBP8.36□□□□□ -1.07
YBX3-208ENST00000540447 GRHL3Q8TE85 626 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 DUSP19Q8WTR2 217 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 GGHQ92820 318 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 CIPCQ9C0C6 399 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 MARCH2Q9P0N8 246 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 KLK4Q9Y5K2 254 aa8.36□□□□□ -1.07
YBX3-208ENST00000540447 MAS1P04201 325 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 ACADMP11310 421 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 AHCYP23526 432 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 SLC6A6P31641 620 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 PTGER3P43115 390 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 ABLIM2Q6H8Q1 611 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 REEP3Q6NUK4 255 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 SPRED1Q7Z699 444 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 ADGRA1Q86SQ6 560 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 DNAJC22Q8N4W6 341 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 RSPRY1Q96DX4 576 aa8.35□□□□□ -1.07
YBX3-208ENST00000540447 FCRL2Q96LA5 508 aaPredicted RBP8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms