RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 FBF1Q8TES7 1133 aa12.35□□□□□ -0.43
SS18-204ENST00000539244 WNT2BQ93097 391 aa12.35□□□□□ -0.43
SS18-204ENST00000539244 CTHRC1Q96CG8 243 aa12.35□□□□□ -0.43
SS18-204ENST00000539244 GPR78Q96P69 363 aa12.35□□□□□ -0.43
SS18-204ENST00000539244 NODALQ96S42 347 aa12.35□□□□□ -0.43
SS18-204ENST00000539244 SMR3AQ99954 134 aa12.35□□□□□ -0.43
SS18-204ENST00000539244 OSBPL11Q9BXB4 747 aa12.35□□□□□ -0.43
SS18-204ENST00000539244 OR2B2Q9GZK3 357 aa12.35□□□□□ -0.43
SS18-204ENST00000539244 ACBD3Q9H3P7 528 aa12.35□□□□□ -0.43
SS18-204ENST00000539244 PIGMQ9H3S5 423 aa12.35□□□□□ -0.43
SS18-204ENST00000539244 METTL7AQ9H8H3 244 aa12.35□□□□□ -0.43
SS18-204ENST00000539244 CLCF1Q9UBD9 225 aa12.35□□□□□ -0.43
SS18-204ENST00000539244 CES1P1Q9UKY3 287 aa12.35□□□□□ -0.43
SS18-204ENST00000539244 EXO1Q9UQ84 846 aaKnown RBP12.35□□□□□ -0.43
SS18-204ENST00000539244 ARID1AO14497 2285 aa12.34□□□□□ -0.43
SS18-204ENST00000539244 HMX2A2RU54 273 aa12.34□□□□□ -0.43
SS18-204ENST00000539244 SH3D21A4FU49 640 aa12.34□□□□□ -0.43
SS18-204ENST00000539244 OR7A17O14581 309 aa12.34□□□□□ -0.43
SS18-204ENST00000539244 RAD51CO43502 376 aa12.34□□□□□ -0.43
SS18-204ENST00000539244 CBR3O75828 277 aa12.34□□□□□ -0.43
SS18-204ENST00000539244 KLHL2O95198 593 aa12.34□□□□□ -0.43
SS18-204ENST00000539244 SIX3O95343 332 aaPredicted RBP12.34□□□□□ -0.43
SS18-204ENST00000539244 NT5EP21589 574 aa12.34□□□□□ -0.43
SS18-204ENST00000539244 CHMP24386 653 aa12.34□□□□□ -0.43
SS18-204ENST00000539244 ADSLP30566 484 aaPredicted RBP12.34□□□□□ -0.43
SS18-204ENST00000539244 GFRA1P56159 465 aa12.34□□□□□ -0.43
SS18-204ENST00000539244 NKX6-1P78426 367 aaPredicted RBP12.34□□□□□ -0.43
SS18-204ENST00000539244 GUCY2DQ02846 1103 aa12.34□□□□□ -0.43
SS18-204ENST00000539244 CAV1Q03135 178 aa12.34□□□□□ -0.43
SS18-204ENST00000539244 FRG2Q64ET8 278 aa12.34□□□□□ -0.43
SS18-204ENST00000539244 DESI1Q6ICB0 168 aa12.34□□□□□ -0.43
SS18-204ENST00000539244 SLC48A1Q6P1K1 146 aa12.34□□□□□ -0.43
SS18-204ENST00000539244 ENPP6Q6UWR7 440 aa12.34□□□□□ -0.43
SS18-204ENST00000539244 PAGE2Q7Z2X7 111 aa12.34□□□□□ -0.43
SS18-204ENST00000539244 WDSUB1Q8N9V3 476 aa12.34□□□□□ -0.43
SS18-204ENST00000539244 OR52B6Q8NGF0 335 aa12.34□□□□□ -0.43
SS18-204ENST00000539244 TRPC4APQ8TEL6 797 aa12.34□□□□□ -0.43
SS18-204ENST00000539244 SLC44A1Q8WWI5 657 aa12.34□□□□□ -0.43
SS18-204ENST00000539244 OMA1Q96E52 524 aa12.34□□□□□ -0.43
SS18-204ENST00000539244 ARSGQ96EG1 525 aa12.34□□□□□ -0.43
SS18-204ENST00000539244 LCORQ96JN0 433 aaPredicted RBP12.34□□□□□ -0.43
SS18-204ENST00000539244 FRG2BQ96QU4 278 aa12.34□□□□□ -0.43
SS18-204ENST00000539244 G6PC3Q9BUM1 346 aa12.34□□□□□ -0.43
SS18-204ENST00000539244 NTMT1Q9BV86 223 aa12.34□□□□□ -0.43
SS18-204ENST00000539244 ITPAQ9BY32 194 aa12.34□□□□□ -0.43
SS18-204ENST00000539244 GALNT9Q9HCQ5 603 aa12.34□□□□□ -0.43
SS18-204ENST00000539244 AHSPQ9NZD4 102 aa12.34□□□□□ -0.43
SS18-204ENST00000539244 MAT2BQ9NZL9 334 aa12.34□□□□□ -0.43
SS18-204ENST00000539244 PCDHA9Q9Y5H5 950 aa12.34□□□□□ -0.43
SS18-204ENST00000539244 C1orf226A1L170 272 aa12.33□□□□□ -0.44
SS18-204ENST00000539244 GOLGA6L10A6NI86 522 aa12.33□□□□□ -0.44
SS18-204ENST00000539244 FAM171A2A8MVW0 826 aa12.33□□□□□ -0.44
SS18-204ENST00000539244 A8MXE2 369 aa12.33□□□□□ -0.44
SS18-204ENST00000539244 H0Y3Z8 333 aa12.33□□□□□ -0.44
SS18-204ENST00000539244 TO15178 435 aa12.33□□□□□ -0.44
SS18-204ENST00000539244 UGT2B11O75310 529 aa12.33□□□□□ -0.44
SS18-204ENST00000539244 HEXAP06865 529 aa12.33□□□□□ -0.44
SS18-204ENST00000539244 KLK1P06870 262 aa12.33□□□□□ -0.44
SS18-204ENST00000539244 MAGEA4P43358 317 aa12.33□□□□□ -0.44
SS18-204ENST00000539244 LHX2P50458 406 aa12.33□□□□□ -0.44
SS18-204ENST00000539244 PLCXD2Q0VAA5 305 aa12.33□□□□□ -0.44
SS18-204ENST00000539244 GAB1Q13480 694 aa12.33□□□□□ -0.44
SS18-204ENST00000539244 POU4F3Q15319 338 aa12.33□□□□□ -0.44
SS18-204ENST00000539244 GGTA1PQ4G0N0 100 aa12.33□□□□□ -0.44
SS18-204ENST00000539244 KLC3Q6P597 504 aa12.33□□□□□ -0.44
SS18-204ENST00000539244 FAM111BQ6SJ93 734 aa12.33□□□□□ -0.44
SS18-204ENST00000539244 LUZP2Q86TE4 346 aa12.33□□□□□ -0.44
SS18-204ENST00000539244 TRIM42Q8IWZ5 723 aa12.33□□□□□ -0.44
SS18-204ENST00000539244 LRRC75A-AS1Q8N1F1 130 aa12.33□□□□□ -0.44
SS18-204ENST00000539244 METTL4Q8N3J2 472 aa12.33□□□□□ -0.44
SS18-204ENST00000539244 SPATA4Q8NEY3 305 aa12.33□□□□□ -0.44
SS18-204ENST00000539244 FBXO25Q8TCJ0 367 aa12.33□□□□□ -0.44
SS18-204ENST00000539244 CDK15Q96Q40 435 aa12.33□□□□□ -0.44
SS18-204ENST00000539244 PIP5K1AQ99755 562 aa12.33□□□□□ -0.44
SS18-204ENST00000539244 LRRC1Q9BTT6 524 aa12.33□□□□□ -0.44
SS18-204ENST00000539244 MRPL1Q9BYD6 325 aaKnown RBP12.33□□□□□ -0.44
SS18-204ENST00000539244 NOL11Q9H8H0 719 aaKnown RBP12.33□□□□□ -0.44
SS18-204ENST00000539244 SERHLQ9NQF3 203 aa12.33□□□□□ -0.44
SS18-204ENST00000539244 MRPS18CQ9Y3D5 142 aaKnown RBP12.33□□□□□ -0.44
SS18-204ENST00000539244 TESMINQ9Y4I5 508 aa12.33□□□□□ -0.44
SS18-204ENST00000539244 A0A096LPK6 155 aa12.32□□□□□ -0.44
SS18-204ENST00000539244 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.32□□□□□ -0.44
SS18-204ENST00000539244 PRAMEF25A6NGN4 478 aa12.32□□□□□ -0.44
SS18-204ENST00000539244 FRG2CA6NGY1 282 aa12.32□□□□□ -0.44
SS18-204ENST00000539244 ARHGEF9O43307 516 aa12.32□□□□□ -0.44
SS18-204ENST00000539244 HCRTR2O43614 444 aa12.32□□□□□ -0.44
SS18-204ENST00000539244 GUCY1B2O75343 617 aa12.32□□□□□ -0.44
SS18-204ENST00000539244 TNFSF13O75888 250 aa12.32□□□□□ -0.44
SS18-204ENST00000539244 CBX7O95931 251 aa12.32□□□□□ -0.44
SS18-204ENST00000539244 CSNK2A2P19784 350 aaPredicted RBP12.32□□□□□ -0.44
SS18-204ENST00000539244 DRD5P21918 477 aa12.32□□□□□ -0.44
SS18-204ENST00000539244 SRD5A2P31213 254 aa12.32□□□□□ -0.44
SS18-204ENST00000539244 PPICP45877 212 aa12.32□□□□□ -0.44
SS18-204ENST00000539244 CPA2P48052 419 aa12.32□□□□□ -0.44
SS18-204ENST00000539244 CCNG1P51959 295 aa12.32□□□□□ -0.44
SS18-204ENST00000539244 MAPK12P53778 367 aa12.32□□□□□ -0.44
SS18-204ENST00000539244 PLTPP55058 493 aa12.32□□□□□ -0.44
SS18-204ENST00000539244 DIO3P55073 304 aa12.32□□□□□ -0.44
SS18-204ENST00000539244 TRAF3Q13114 568 aa12.32□□□□□ -0.44
SS18-204ENST00000539244 NNATQ16517 81 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms