RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	OR10H2	O60403	315 aa		11.3	□□□□□ -0.6
CAPN1-223	ENST00000533079	TNFSF13	O75888	250 aa		11.3	□□□□□ -0.6
CAPN1-223	ENST00000533079	SOX30	O94993	753 aa		11.3	□□□□□ -0.6
CAPN1-223	ENST00000533079	SOX18	P35713	384 aa		11.3	□□□□□ -0.6
CAPN1-223	ENST00000533079	CD79B	P40259	229 aa		11.3	□□□□□ -0.6
CAPN1-223	ENST00000533079	GDF5	P43026	501 aa		11.3	□□□□□ -0.6
CAPN1-223	ENST00000533079	ARFIP1	P53367	373 aa		11.3	□□□□□ -0.6
CAPN1-223	ENST00000533079	FBXW4	P57775	412 aa		11.3	□□□□□ -0.6
CAPN1-223	ENST00000533079	E2F2	Q14209	437 aa		11.3	□□□□□ -0.6
CAPN1-223	ENST00000533079	TGFBI	Q15582	683 aa		11.3	□□□□□ -0.6
CAPN1-223	ENST00000533079	TBCC	Q15814	346 aa		11.3	□□□□□ -0.6
CAPN1-223	ENST00000533079	ETFDH	Q16134	617 aa		11.3	□□□□□ -0.6
CAPN1-223	ENST00000533079	PDK4	Q16654	411 aa		11.3	□□□□□ -0.6
CAPN1-223	ENST00000533079	CDKL4	Q5MAI5	379 aa		11.3	□□□□□ -0.6
CAPN1-223	ENST00000533079	TEDDM1	Q5T9Z0	273 aa		11.3	□□□□□ -0.6
CAPN1-223	ENST00000533079	LGSN	Q5TDP6	509 aa		11.3	□□□□□ -0.6
CAPN1-223	ENST00000533079	OR2A2	Q6IF42	318 aa		11.3	□□□□□ -0.6
CAPN1-223	ENST00000533079	ADNP2	Q6IQ32	1131 aa		11.3	□□□□□ -0.6
CAPN1-223	ENST00000533079	PLEKHM3	Q6ZWE6	761 aa		11.3	□□□□□ -0.6
CAPN1-223	ENST00000533079	UBE3D	Q7Z6J8	389 aa		11.3	□□□□□ -0.6
CAPN1-223	ENST00000533079	MILR1	Q7Z6M3	343 aa		11.3	□□□□□ -0.6
CAPN1-223	ENST00000533079	GCNT2	Q8N0V5	402 aa		11.3	□□□□□ -0.6
CAPN1-223	ENST00000533079	TMEM171	Q8WVE6	324 aa		11.3	□□□□□ -0.6
CAPN1-223	ENST00000533079	RIT1	Q92963	219 aa		11.3	□□□□□ -0.6
CAPN1-223	ENST00000533079	PPWD1	Q96BP3	646 aa	Known RBP	11.3	□□□□□ -0.6
CAPN1-223	ENST00000533079	WFIKKN1	Q96NZ8	548 aa		11.3	□□□□□ -0.6
CAPN1-223	ENST00000533079	PLAC1	Q9HBJ0	212 aa		11.3	□□□□□ -0.6
CAPN1-223	ENST00000533079	POPDC3	Q9HBV1	291 aa		11.3	□□□□□ -0.6
CAPN1-223	ENST00000533079	KLHL28	Q9NXS3	571 aa		11.3	□□□□□ -0.6
CAPN1-223	ENST00000533079	ELOVL5	Q9NYP7	299 aa		11.3	□□□□□ -0.6
CAPN1-223	ENST00000533079	WWOX	Q9NZC7	414 aa		11.3	□□□□□ -0.6
CAPN1-223	ENST00000533079	CTNNAL1	Q9UBT7	734 aa		11.3	□□□□□ -0.6
CAPN1-223	ENST00000533079	ZNF490	Q9ULM2	529 aa	Predicted RBP	11.3	□□□□□ -0.6
CAPN1-223	ENST00000533079	RNF112	Q9ULX5	631 aa		11.3	□□□□□ -0.6
CAPN1-223	ENST00000533079	CHMP2B	Q9UQN3	213 aa		11.3	□□□□□ -0.6
CAPN1-223	ENST00000533079		A0A1W2PNV4	684 aa		11.29	□□□□□ -0.6
CAPN1-223	ENST00000533079	FAM159B	A6NKW6	160 aa		11.29	□□□□□ -0.6
CAPN1-223	ENST00000533079	HCRTR2	O43614	444 aa		11.29	□□□□□ -0.6
CAPN1-223	ENST00000533079	TLX2	O43763	284 aa	Predicted RBP	11.29	□□□□□ -0.6
CAPN1-223	ENST00000533079	BANF1	O75531	89 aa		11.29	□□□□□ -0.6
CAPN1-223	ENST00000533079	CLPS	P04118	112 aa		11.29	□□□□□ -0.6
CAPN1-223	ENST00000533079	ILF2	Q12905	390 aa	Known RBP	11.29	□□□□□ -0.6
CAPN1-223	ENST00000533079	SNTA1	Q13424	505 aa		11.29	□□□□□ -0.6
CAPN1-223	ENST00000533079	DOC2A	Q14183	400 aa		11.29	□□□□□ -0.6
CAPN1-223	ENST00000533079	ZNF267	Q14586	743 aa	Predicted RBP	11.29	□□□□□ -0.6
CAPN1-223	ENST00000533079	SETDB1	Q15047	1291 aa		11.29	□□□□□ -0.6
CAPN1-223	ENST00000533079	TSN	Q15631	228 aa	Known RBP	11.29	□□□□□ -0.6
CAPN1-223	ENST00000533079	HP1BP3	Q5SSJ5	553 aa	Predicted RBP	11.29	□□□□□ -0.6
CAPN1-223	ENST00000533079	HLA-DQA1	Q5Y7H0	255 aa		11.29	□□□□□ -0.6
CAPN1-223	ENST00000533079	BICRAL	Q6AI39	1079 aa		11.29	□□□□□ -0.6
CAPN1-223	ENST00000533079	AAGAB	Q6PD74	315 aa		11.29	□□□□□ -0.6
CAPN1-223	ENST00000533079	DGAT2L6	Q6ZPD8	337 aa		11.29	□□□□□ -0.6
CAPN1-223	ENST00000533079	TRABD2A	Q86V40	505 aa		11.29	□□□□□ -0.6
CAPN1-223	ENST00000533079	GPR180	Q86V85	440 aa		11.29	□□□□□ -0.6
CAPN1-223	ENST00000533079	IFNE	Q86WN2	208 aa		11.29	□□□□□ -0.6
CAPN1-223	ENST00000533079	GRAMD2A	Q8IUY3	354 aa		11.29	□□□□□ -0.6
CAPN1-223	ENST00000533079	OR4N5	Q8IXE1	308 aa		11.29	□□□□□ -0.6
CAPN1-223	ENST00000533079	ZCCHC7	Q8N3Z6	543 aa	Known RBP	11.29	□□□□□ -0.6
CAPN1-223	ENST00000533079	ZNF473	Q8WTR7	871 aa	Known RBP	11.29	□□□□□ -0.6
CAPN1-223	ENST00000533079	CTHRC1	Q96CG8	243 aa		11.29	□□□□□ -0.6
CAPN1-223	ENST00000533079	CMTM7	Q96FZ5	175 aa		11.29	□□□□□ -0.6
CAPN1-223	ENST00000533079	MARK4	Q96L34	752 aa		11.29	□□□□□ -0.6
CAPN1-223	ENST00000533079	CENPK	Q9BS16	269 aa		11.29	□□□□□ -0.6
CAPN1-223	ENST00000533079	TMEM79	Q9BSE2	394 aa		11.29	□□□□□ -0.6
CAPN1-223	ENST00000533079	OR2B2	Q9GZK3	357 aa		11.29	□□□□□ -0.6
CAPN1-223	ENST00000533079	CCDC134	Q9H6E4	229 aa		11.29	□□□□□ -0.6
CAPN1-223	ENST00000533079	METTL7A	Q9H8H3	244 aa		11.29	□□□□□ -0.6
CAPN1-223	ENST00000533079	ACTR8	Q9H981	624 aa		11.29	□□□□□ -0.6
CAPN1-223	ENST00000533079	PPAN	Q9NQ55	473 aa	Known RBP	11.29	□□□□□ -0.6
CAPN1-223	ENST00000533079	DLGAP4	Q9Y2H0	992 aa		11.29	□□□□□ -0.6
CAPN1-223	ENST00000533079	POC1B-GALNT4	F8VUJ3	575 aa		11.28	□□□□□ -0.6
CAPN1-223	ENST00000533079	RTCA	O00442	366 aa	Known RBP	11.28	□□□□□ -0.6
CAPN1-223	ENST00000533079	SNPH	O15079	494 aa		11.28	□□□□□ -0.6
CAPN1-223	ENST00000533079	GPR75	O95800	540 aa		11.28	□□□□□ -0.6
CAPN1-223	ENST00000533079	TP53	P04637	393 aa	Predicted RBP	11.28	□□□□□ -0.6
CAPN1-223	ENST00000533079	NAGA	P17050	411 aa		11.28	□□□□□ -0.6
CAPN1-223	ENST00000533079	KRT15	P19012	456 aa		11.28	□□□□□ -0.6
CAPN1-223	ENST00000533079	CD22	P20273	847 aa		11.28	□□□□□ -0.6
CAPN1-223	ENST00000533079	CNTF	P26441	200 aa		11.28	□□□□□ -0.6
CAPN1-223	ENST00000533079	CCKAR	P32238	428 aa		11.28	□□□□□ -0.6
CAPN1-223	ENST00000533079	UGT2B10	P36537	528 aa		11.28	□□□□□ -0.6
CAPN1-223	ENST00000533079	CASP2	P42575	452 aa		11.28	□□□□□ -0.6
CAPN1-223	ENST00000533079	SERPINB9	P50453	376 aa		11.28	□□□□□ -0.6
CAPN1-223	ENST00000533079	PGGT1B	P53609	377 aa		11.28	□□□□□ -0.6
CAPN1-223	ENST00000533079	GFRA1	P56159	465 aa		11.28	□□□□□ -0.6
CAPN1-223	ENST00000533079	RPS13	P62277	151 aa	Known RBP	11.28	□□□□□ -0.6
CAPN1-223	ENST00000533079	FAM27E3	Q08E93	113 aa		11.28	□□□□□ -0.6
CAPN1-223	ENST00000533079	SLAMF1	Q13291	335 aa		11.28	□□□□□ -0.6
CAPN1-223	ENST00000533079	FGFBP1	Q14512	234 aa		11.28	□□□□□ -0.6
CAPN1-223	ENST00000533079	KHDRBS2	Q5VWX1	349 aa	Known RBP	11.28	□□□□□ -0.6
CAPN1-223	ENST00000533079	OR4C11	Q6IEV9	310 aa		11.28	□□□□□ -0.6
CAPN1-223	ENST00000533079	SLC30A6	Q6NXT4	461 aa		11.28	□□□□□ -0.6
CAPN1-223	ENST00000533079	ANGPTL8	Q6UXH0	198 aa		11.28	□□□□□ -0.6
CAPN1-223	ENST00000533079	YRDC	Q86U90	279 aa	Known RBP	11.28	□□□□□ -0.6
CAPN1-223	ENST00000533079	HIPK1	Q86Z02	1210 aa		11.28	□□□□□ -0.6
CAPN1-223	ENST00000533079	LAS2	Q8IYD9	372 aa		11.28	□□□□□ -0.6
CAPN1-223	ENST00000533079	DCAKD	Q8WVC6	231 aa		11.28	□□□□□ -0.6
CAPN1-223	ENST00000533079	ZBTB9	Q96C00	473 aa		11.28	□□□□□ -0.6
CAPN1-223	ENST00000533079	MTBP	Q96DY7	904 aa		11.28	□□□□□ -0.6
CAPN1-223	ENST00000533079	FAM111A	Q96PZ2	611 aa		11.28	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms