RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 FAM46CQ5VWP2 391 aa18.15■□□□□ 0.5
VPS28-213ENST00000530983 ZNF793Q6ZN11 406 aa18.15■□□□□ 0.5
VPS28-213ENST00000530983 LRRTM4Q86VH4 590 aa18.15■□□□□ 0.5
VPS28-213ENST00000530983 MEX3DQ86XN8 651 aaKnown RBP18.15■□□□□ 0.5
VPS28-213ENST00000530983 RAB43Q86YS6 212 aa18.15■□□□□ 0.5
VPS28-213ENST00000530983 CXorf40AQ8TE69 158 aa18.15■□□□□ 0.5
VPS28-213ENST00000530983 PRRC1Q96M27 445 aa18.15■□□□□ 0.5
VPS28-213ENST00000530983 DMRTB1Q96MA1 342 aa18.15■□□□□ 0.5
VPS28-213ENST00000530983 BCL2L10Q9HD36 194 aa18.15■□□□□ 0.5
VPS28-213ENST00000530983 A0A1W2PQL4 384 aaPredicted RBP18.14■□□□□ 0.49
VPS28-213ENST00000530983 ADH1CP00326 375 aa18.14■□□□□ 0.49
VPS28-213ENST00000530983 ACADMP11310 421 aa18.14■□□□□ 0.49
VPS28-213ENST00000530983 EPCAMP16422 314 aa18.14■□□□□ 0.49
VPS28-213ENST00000530983 VEGFBP49765 207 aa18.14■□□□□ 0.49
VPS28-213ENST00000530983 NCBP2P52298 156 aaKnown RBP eCLIP18.14■□□□□ 0.495e-6■■□□□ 11.5
VPS28-213ENST00000530983 CSNK1G2P78368 415 aa18.14■□□□□ 0.49
VPS28-213ENST00000530983 HYAL2Q12891 473 aa18.14■□□□□ 0.49
VPS28-213ENST00000530983 SNAPC1Q16533 368 aa18.14■□□□□ 0.49
VPS28-213ENST00000530983 FAM131AQ6UXB0 335 aa18.14■□□□□ 0.49
VPS28-213ENST00000530983 ADAMTSL4Q6UY14 1074 aa18.14■□□□□ 0.49
VPS28-213ENST00000530983 LINC00471Q8N535 108 aa18.14■□□□□ 0.49
VPS28-213ENST00000530983 BBS10Q8TAM1 723 aa18.14■□□□□ 0.49
VPS28-213ENST00000530983 YIPF4Q9BSR8 244 aa18.14■□□□□ 0.49
VPS28-213ENST00000530983 PITHD1Q9GZP4 211 aaPredicted RBP18.14■□□□□ 0.49
VPS28-213ENST00000530983 EGLN3Q9H6Z9 239 aa18.14■□□□□ 0.49
VPS28-213ENST00000530983 SLC35C2Q9NQQ7 365 aa18.14■□□□□ 0.49
VPS28-213ENST00000530983 WDR70Q9NW82 654 aa18.14■□□□□ 0.49
VPS28-213ENST00000530983 IGKV1-8A0A0C4DH67 115 aa18.14■□□□□ 0.49
VPS28-213ENST00000530983 GLOD5A6NK44 160 aa18.14■□□□□ 0.49
VPS28-213ENST00000530983 TIMP1P01033 207 aa18.14■□□□□ 0.49
VPS28-213ENST00000530983 SERPIND1P05546 499 aa18.14■□□□□ 0.49
VPS28-213ENST00000530983 SDC2P34741 201 aa18.14■□□□□ 0.49
VPS28-213ENST00000530983 SSR2P43308 183 aa18.14■□□□□ 0.49
VPS28-213ENST00000530983 SMSP52788 366 aa18.14■□□□□ 0.49
VPS28-213ENST00000530983 PRKAG1P54619 331 aa18.14■□□□□ 0.49
VPS28-213ENST00000530983 RPS25P62851 125 aaKnown RBP18.14■□□□□ 0.49
VPS28-213ENST00000530983 SMUG1Q53HV7 270 aa18.14■□□□□ 0.49
VPS28-213ENST00000530983 MRPS18AQ9NVS2 196 aaKnown RBP18.14■□□□□ 0.49
VPS28-213ENST00000530983 SF3B6Q9Y3B4 125 aaKnown RBP18.14■□□□□ 0.49
VPS28-213ENST00000530983 OTOL1A6NHN0 477 aaPredicted RBP18.13■□□□□ 0.49
VPS28-213ENST00000530983 CENPXA8MT69 81 aa18.13■□□□□ 0.49
VPS28-213ENST00000530983 STK25O00506 426 aa18.13■□□□□ 0.49
VPS28-213ENST00000530983 TSPAN19P0C672 248 aa18.13■□□□□ 0.49
VPS28-213ENST00000530983 ACP2P11117 423 aa18.13■□□□□ 0.49
VPS28-213ENST00000530983 DRD2P14416 443 aa18.13■□□□□ 0.49
VPS28-213ENST00000530983 MYL12AP19105 171 aa18.13■□□□□ 0.49
VPS28-213ENST00000530983 BUD31P41223 144 aaPredicted RBP18.13■□□□□ 0.49
VPS28-213ENST00000530983 P2RY2P41231 377 aa18.13■□□□□ 0.49
VPS28-213ENST00000530983 KHKP50053 298 aa18.13■□□□□ 0.49
VPS28-213ENST00000530983 TRA2BP62995 288 aaKnown RBP18.13■□□□□ 0.49
VPS28-213ENST00000530983 CDK3Q00526 305 aa18.13■□□□□ 0.49
VPS28-213ENST00000530983 CHRNEQ04844 493 aa18.13■□□□□ 0.49
VPS28-213ENST00000530983 PLK5Q496M5 336 aa18.13■□□□□ 0.49
VPS28-213ENST00000530983 KLHL22Q53GT1 634 aa18.13■□□□□ 0.49
VPS28-213ENST00000530983 LAPTM4BQ86VI4 370 aa18.13■□□□□ 0.49
VPS28-213ENST00000530983 GALNT12Q8IXK2 581 aa18.13■□□□□ 0.49
VPS28-213ENST00000530983 ZFYVE19Q96K21 471 aa18.13■□□□□ 0.49
VPS28-213ENST00000530983 DEPDC7Q96QD5 511 aa18.13■□□□□ 0.49
VPS28-213ENST00000530983 TMEM246Q9BRR3 403 aa18.13■□□□□ 0.49
VPS28-213ENST00000530983 CRISPLD2Q9H0B8 497 aa18.13■□□□□ 0.49
VPS28-213ENST00000530983 GOLGA4Q13439 2230 aaKnown RBP18.13■□□□□ 0.49
VPS28-213ENST00000530983 DOCK9Q9BZ29 2069 aa18.13■□□□□ 0.49
VPS28-213ENST00000530983 MEIOCA2RUB1 952 aa18.12■□□□□ 0.49
VPS28-213ENST00000530983 LRIT2A6NDA9 550 aa18.12■□□□□ 0.49
VPS28-213ENST00000530983 MAN2B1O00754 1011 aa18.12■□□□□ 0.49
VPS28-213ENST00000530983 PCCBP05166 539 aa18.12■□□□□ 0.49
VPS28-213ENST00000530983 CSF3P09919 207 aa18.12■□□□□ 0.49
VPS28-213ENST00000530983 ALPPL2P10696 532 aa18.12■□□□□ 0.49
VPS28-213ENST00000530983 SCN1BQ07699 218 aa18.12■□□□□ 0.49
VPS28-213ENST00000530983 RAB40BQ12829 278 aa18.12■□□□□ 0.49
VPS28-213ENST00000530983 ASAH1Q13510 395 aa18.12■□□□□ 0.49
VPS28-213ENST00000530983 ZNF234Q14588 700 aa18.12■□□□□ 0.49
VPS28-213ENST00000530983 CCDC58Q4VC31 144 aa18.12■□□□□ 0.49
VPS28-213ENST00000530983 XKRXQ6PP77 449 aa18.12■□□□□ 0.49
VPS28-213ENST00000530983 ADCK2Q7Z695 626 aa18.12■□□□□ 0.49
VPS28-213ENST00000530983 SYT14Q8NB59 555 aa18.12■□□□□ 0.49
VPS28-213ENST00000530983 TMEM163Q8TC26 289 aa18.12■□□□□ 0.49
VPS28-213ENST00000530983 TRIM43Q96BQ3 446 aaPredicted RBP18.12■□□□□ 0.49
VPS28-213ENST00000530983 RNFT2Q96EX2 444 aa18.12■□□□□ 0.49
VPS28-213ENST00000530983 PHOX2BQ99453 314 aa18.12■□□□□ 0.49
VPS28-213ENST00000530983 SPATA5L1Q9BVQ7 753 aa18.12■□□□□ 0.49
VPS28-213ENST00000530983 QRSL1Q9H0R6 528 aaKnown RBP18.12■□□□□ 0.49
VPS28-213ENST00000530983 MMP28Q9H239 520 aa18.12■□□□□ 0.49
VPS28-213ENST00000530983 KLHL31Q9H511 634 aa18.12■□□□□ 0.49
VPS28-213ENST00000530983 FGF20Q9NP95 211 aaPredicted RBP18.12■□□□□ 0.49
VPS28-213ENST00000530983 PLSCR3Q9NRY6 295 aa18.12■□□□□ 0.49
VPS28-213ENST00000530983 GPR52Q9Y2T5 361 aa18.12■□□□□ 0.49
VPS28-213ENST00000530983 TRPM6Q9BX84 2022 aa18.12■□□□□ 0.49
VPS28-213ENST00000530983 A0A087WUU8 490 aa18.12■□□□□ 0.49
VPS28-213ENST00000530983 TMEM129A0AVI4 362 aa18.12■□□□□ 0.49
VPS28-213ENST00000530983 SMIM30A4D0T7 59 aa18.12■□□□□ 0.49
VPS28-213ENST00000530983 TFECO14948 347 aaPredicted RBP18.12■□□□□ 0.49
VPS28-213ENST00000530983 PRODHO43272 600 aa18.12■□□□□ 0.49
VPS28-213ENST00000530983 ALX3O95076 343 aa18.12■□□□□ 0.49
VPS28-213ENST00000530983 FGBP02675 491 aa18.12■□□□□ 0.49
VPS28-213ENST00000530983 STATHP02808 62 aa18.12■□□□□ 0.49
VPS28-213ENST00000530983 HMGN2P05204 90 aaKnown RBP18.12■□□□□ 0.49
VPS28-213ENST00000530983 NR2F6P10588 404 aa18.12■□□□□ 0.49
VPS28-213ENST00000530983 DDOSTP39656 456 aa18.12■□□□□ 0.49
VPS28-213ENST00000530983 VIPR2P41587 438 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms