RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 PLXND1Q9Y4D7 1925 aa8.73□□□□□ -1.01
LIMCH1-215ENST00000512632 A0A1B0GVC2 190 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 A0A1W2PRQ8 180 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 A6NIN4 97 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 NOTOA8MTQ0 251 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 DVL2O14641 736 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 SPINT1O43278 529 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 LILRB3O75022 631 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 RB1P06400 928 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 CHRM4P08173 479 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 KELP23276 732 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 SLC6A11P48066 632 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 NCBP2P52298 156 aaKnown RBP eCLIP8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 SMSP52788 366 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 PCBP4P57723 403 aaKnown RBP8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 SLC30A6Q6NXT4 461 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 LILRA6Q6PI73 481 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 ZNF730Q6ZMV8 503 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 PRICKLE2Q7Z3G6 844 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 MARCH9Q86YJ5 346 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 ANKK1Q8NFD2 765 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 UFD1Q92890 307 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 ARRDC3Q96B67 414 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 TRMT61BQ9BVS5 477 aaKnown RBP8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 TMEM39AQ9NV64 488 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 ZSCAN32Q9NX65 697 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 NFKBIL1Q9UBC1 381 aaPredicted RBP8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 CPSF4LA6NMK7 179 aaKnown RBP8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 CENPBD1B2RD01 187 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 LATO43561 262 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 LIMS3P0CW19 117 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 LIMS4P0CW20 117 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 MAP2K3P46734 347 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 COX10Q12887 443 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 TCEAL5Q5H9L2 206 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 NDUFAF5Q5TEU4 345 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 LCN1P1Q5VSP4 162 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 HSDL2Q6YN16 418 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 RDH10Q8IZV5 341 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 TEX47Q8TBZ9 253 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 PXYLP1Q8TE99 480 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 ARMC5Q96C12 935 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 RNF170Q96K19 258 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 DHRS1Q96LJ7 313 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 CITED4Q96RK1 184 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 CLCA2Q9UQC9 943 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 NTNG1Q9Y2I2 539 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 SF3B6Q9Y3B4 125 aaKnown RBP8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 SHISA3A0PJX4 238 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 CD8B2A6NJW9 211 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 PAPLNO95428 1278 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 HMGN2P05204 90 aaKnown RBP8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 CD8BP10966 210 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 CTBP2P56545 445 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 GALK2Q01415 458 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 LCTLQ6UWM7 567 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 LYPD8Q6UX82 237 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 NUDT13Q86X67 352 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 VWCEQ96DN2 955 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 FAM46AQ96IP4 442 aaKnown RBP8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 FUZQ9BT04 418 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 MAU2Q9Y6X3 613 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 LOC102723532A0A0G2JNH3 316 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 FAM170BA6NMN3 283 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 PGRMC2O15173 223 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 PRODHO43272 600 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 AKR7A2O43488 359 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 ACRP10323 421 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 INPP1P49441 399 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 GAS1P54826 345 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 TAS2R41P59536 307 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 CDK5Q00535 292 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 SLC27A4Q6P1M0 643 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 AMZ2Q86W34 360 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 C12orf40Q86WS4 652 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 ZNF557Q8N988 423 aaPredicted RBP8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 TP53I13Q8NBR0 393 aaPredicted RBP8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 MORN4Q8NDC4 146 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 OR2L2Q8NH16 312 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 RASSF5Q8WWW0 418 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 NACC2Q96BF6 587 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 MCOLN1Q9GZU1 580 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 OR52A5Q9H2C5 316 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 ACAD8Q9UKU7 415 aa8.72□□□□□ -1.01
LIMCH1-215ENST00000512632 SCAMP1O15126 338 aa8.71□□□□□ -1.01
LIMCH1-215ENST00000512632 NDUFS4O43181 175 aa8.71□□□□□ -1.01
LIMCH1-215ENST00000512632 MOSPD3O75425 235 aa8.71□□□□□ -1.01
LIMCH1-215ENST00000512632 LGI1O95970 557 aa8.71□□□□□ -1.01
LIMCH1-215ENST00000512632 BNC1Q01954 994 aa8.71□□□□□ -1.01
LIMCH1-215ENST00000512632 TPBGQ13641 420 aa8.71□□□□□ -1.01
LIMCH1-215ENST00000512632 C1orf94Q6P1W5 598 aa8.71□□□□□ -1.01
LIMCH1-215ENST00000512632 UBE3DQ7Z6J8 389 aa8.71□□□□□ -1.01
LIMCH1-215ENST00000512632 C7orf57Q8NEG2 295 aa8.71□□□□□ -1.01
LIMCH1-215ENST00000512632 WACQ9BTA9 647 aa8.71□□□□□ -1.01
LIMCH1-215ENST00000512632 EPHX3Q9H6B9 360 aa8.71□□□□□ -1.01
LIMCH1-215ENST00000512632 CREBZFQ9NS37 354 aa8.71□□□□□ -1.01
LIMCH1-215ENST00000512632 GIMAP4Q9NUV9 329 aa8.71□□□□□ -1.01
LIMCH1-215ENST00000512632 DKK3Q9UBP4 350 aa8.71□□□□□ -1.01
LIMCH1-215ENST00000512632 GPR55Q9Y2T6 319 aaPredicted RBP8.71□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms