RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 FCRL4Q96PJ5 515 aa15.59■□□□□ 0.09
CCDC88B-210ENST00000494566 TSSK6Q9BXA6 273 aa15.59■□□□□ 0.09
CCDC88B-210ENST00000494566 RACGAP1Q9H0H5 632 aa15.59■□□□□ 0.09
CCDC88B-210ENST00000494566 ICKQ9UPZ9 632 aa15.59■□□□□ 0.09
CCDC88B-210ENST00000494566 SLITRK5O94991 958 aa15.59■□□□□ 0.09
CCDC88B-210ENST00000494566 ERGP11308 486 aa15.59■□□□□ 0.09
CCDC88B-210ENST00000494566 IL7P13232 177 aa15.59■□□□□ 0.09
CCDC88B-210ENST00000494566 IFI30P13284 250 aa15.59■□□□□ 0.09
CCDC88B-210ENST00000494566 RHCEP18577 417 aa15.59■□□□□ 0.09
CCDC88B-210ENST00000494566 CHAC2Q8WUX2 184 aa15.59■□□□□ 0.09
CCDC88B-210ENST00000494566 TRMT61BQ9BVS5 477 aaKnown RBP15.59■□□□□ 0.09
CCDC88B-210ENST00000494566 TMEM106CQ9BVX2 250 aa15.59■□□□□ 0.09
CCDC88B-210ENST00000494566 OR51I1Q9H343 314 aa15.59■□□□□ 0.09
CCDC88B-210ENST00000494566 GLIPR2Q9H4G4 154 aa15.59■□□□□ 0.09
CCDC88B-210ENST00000494566 FBXW2Q9UKT8 454 aa15.59■□□□□ 0.09
CCDC88B-210ENST00000494566 SPTBP11277 2137 aa15.59■□□□□ 0.09
CCDC88B-210ENST00000494566 TRBV23OR9-2A0A075B6M9 112 aa15.58■□□□□ 0.09
CCDC88B-210ENST00000494566 A0A1W2PQL4 384 aaPredicted RBP15.58■□□□□ 0.09
CCDC88B-210ENST00000494566 CENPXA8MT69 81 aa15.58■□□□□ 0.09
CCDC88B-210ENST00000494566 PGRMC2O15173 223 aa15.58■□□□□ 0.09
CCDC88B-210ENST00000494566 CPNE3O75131 537 aaKnown RBP15.58■□□□□ 0.09
CCDC88B-210ENST00000494566 PBX2P40425 430 aa15.58■□□□□ 0.09
CCDC88B-210ENST00000494566 BCL6P41182 706 aa15.58■□□□□ 0.09
CCDC88B-210ENST00000494566 PCBP4P57723 403 aaKnown RBP15.58■□□□□ 0.09
CCDC88B-210ENST00000494566 RAB8AP61006 207 aa15.58■□□□□ 0.09
CCDC88B-210ENST00000494566 SNRPNP63162 240 aaKnown RBP15.58■□□□□ 0.09
CCDC88B-210ENST00000494566 Q5BKY6 102 aa15.58■□□□□ 0.09
CCDC88B-210ENST00000494566 C9orf50Q5SZB4 431 aa15.58■□□□□ 0.09
CCDC88B-210ENST00000494566 FBXL6Q8N531 539 aa15.58■□□□□ 0.09
CCDC88B-210ENST00000494566 RGMAQ96B86 450 aa15.58■□□□□ 0.09
CCDC88B-210ENST00000494566 WASH6PQ9NQA3 447 aa15.58■□□□□ 0.09
CCDC88B-210ENST00000494566 SEMA3GQ9NS98 782 aa15.58■□□□□ 0.09
CCDC88B-210ENST00000494566 SPHK1Q9NYA1 384 aa15.58■□□□□ 0.09
CCDC88B-210ENST00000494566 SEC14L3Q9UDX4 400 aa15.58■□□□□ 0.09
CCDC88B-210ENST00000494566 MEIOCA2RUB1 952 aa15.58■□□□□ 0.08
CCDC88B-210ENST00000494566 GSAPA4D1B5 854 aa15.58■□□□□ 0.08
CCDC88B-210ENST00000494566 C5orf67F2Z3F1 127 aa15.58■□□□□ 0.08
CCDC88B-210ENST00000494566 PRKYO43930 277 aa15.58■□□□□ 0.08
CCDC88B-210ENST00000494566 SDC2P34741 201 aa15.58■□□□□ 0.08
CCDC88B-210ENST00000494566 RUNX1T1Q06455 604 aa15.58■□□□□ 0.08
CCDC88B-210ENST00000494566 RPA4Q13156 261 aa15.58■□□□□ 0.08
CCDC88B-210ENST00000494566 FAM46CQ5VWP2 391 aa15.58■□□□□ 0.08
CCDC88B-210ENST00000494566 CASP12Q6UXS9 341 aa15.58■□□□□ 0.08
CCDC88B-210ENST00000494566 TMEM145Q8NBT3 493 aa15.58■□□□□ 0.08
CCDC88B-210ENST00000494566 OR2A1Q8NGT9 310 aa15.58■□□□□ 0.08
CCDC88B-210ENST00000494566 APOBEC4Q8WW27 367 aaKnown RBP15.58■□□□□ 0.08
CCDC88B-210ENST00000494566 HERVK_113Q902F9 699 aa15.58■□□□□ 0.08
CCDC88B-210ENST00000494566 SLC6A18Q96N87 628 aa15.58■□□□□ 0.08
CCDC88B-210ENST00000494566 CAMK1GQ96NX5 476 aa15.58■□□□□ 0.08
CCDC88B-210ENST00000494566 TREX2Q9BQ50 279 aaPredicted RBP15.58■□□□□ 0.08
CCDC88B-210ENST00000494566 POLR2J3Q9H1A7 115 aaKnown RBP15.58■□□□□ 0.08
CCDC88B-210ENST00000494566 PELI2Q9HAT8 420 aa15.58■□□□□ 0.08
CCDC88B-210ENST00000494566 EQTNQ9NQ60 294 aa15.58■□□□□ 0.08
CCDC88B-210ENST00000494566 ZCCHC3Q9NUD5 404 aaKnown RBP15.58■□□□□ 0.08
CCDC88B-210ENST00000494566 FTSJ1Q9UET6 329 aa15.58■□□□□ 0.08
CCDC88B-210ENST00000494566 TMCC3Q9ULS5 477 aa15.58■□□□□ 0.08
CCDC88B-210ENST00000494566 CFL2Q9Y281 166 aa15.58■□□□□ 0.08
CCDC88B-210ENST00000494566 DVL2O14641 736 aa15.57■□□□□ 0.08
CCDC88B-210ENST00000494566 SLC31A1O15431 190 aa15.57■□□□□ 0.08
CCDC88B-210ENST00000494566 TSC22D2O75157 780 aa15.57■□□□□ 0.08
CCDC88B-210ENST00000494566 SOX18P35713 384 aa15.57■□□□□ 0.08
CCDC88B-210ENST00000494566 XKP51811 444 aa15.57■□□□□ 0.08
CCDC88B-210ENST00000494566 NCBP2P52298 156 aaKnown RBP eCLIP15.57■□□□□ 0.08
CCDC88B-210ENST00000494566 ZNF91Q05481 1191 aa15.57■□□□□ 0.08
CCDC88B-210ENST00000494566 OR4C11Q6IEV9 310 aa15.57■□□□□ 0.08
CCDC88B-210ENST00000494566 LHFPL3Q86UP9 236 aa15.57■□□□□ 0.08
CCDC88B-210ENST00000494566 RAB43Q86YS6 212 aa15.57■□□□□ 0.08
CCDC88B-210ENST00000494566 CCDC116Q8IYX3 515 aa15.57■□□□□ 0.08
CCDC88B-210ENST00000494566 GHDCQ8N2G8 530 aa15.57■□□□□ 0.08
CCDC88B-210ENST00000494566 DENND6BQ8NEG7 585 aa15.57■□□□□ 0.08
CCDC88B-210ENST00000494566 OR14C36Q8NHC7 312 aa15.57■□□□□ 0.08
CCDC88B-210ENST00000494566 MKRN2Q9H000 416 aaKnown RBP15.57■□□□□ 0.08
CCDC88B-210ENST00000494566 CA5BQ9Y2D0 317 aa15.57■□□□□ 0.08
CCDC88B-210ENST00000494566 MYL12BO14950 172 aa15.57■□□□□ 0.08
CCDC88B-210ENST00000494566 ERI3O43414 337 aaKnown RBP15.57■□□□□ 0.08
CCDC88B-210ENST00000494566 HYAL3O43820 417 aaPredicted RBP15.57■□□□□ 0.08
CCDC88B-210ENST00000494566 TSPAN19P0C672 248 aa15.57■□□□□ 0.08
CCDC88B-210ENST00000494566 CXCR2P25025 360 aa15.57■□□□□ 0.08
CCDC88B-210ENST00000494566 ELAVL4P26378 380 aaKnown RBP15.57■□□□□ 0.08
CCDC88B-210ENST00000494566 APEX1P27695 318 aaKnown RBP15.57■□□□□ 0.08
CCDC88B-210ENST00000494566 LASP1Q14847 261 aaKnown RBP15.57■□□□□ 0.08
CCDC88B-210ENST00000494566 RNASE12Q5GAN4 147 aaKnown RBP15.57■□□□□ 0.08
CCDC88B-210ENST00000494566 C18orf63Q68DL7 685 aa15.57■□□□□ 0.08
CCDC88B-210ENST00000494566 ZNF770Q6IQ21 691 aaPredicted RBP15.57■□□□□ 0.08
CCDC88B-210ENST00000494566 UBQLNLQ8IYU4 475 aa15.57■□□□□ 0.08
CCDC88B-210ENST00000494566 CADM2Q8N3J6 435 aa15.57■□□□□ 0.08
CCDC88B-210ENST00000494566 SLX1AQ9BQ83 275 aa15.57■□□□□ 0.08
CCDC88B-210ENST00000494566 C11orf54Q9H0W9 315 aaPredicted RBP15.57■□□□□ 0.08
CCDC88B-210ENST00000494566 KCNE3Q9Y6H6 103 aa15.57■□□□□ 0.08
CCDC88B-210ENST00000494566 NR2F1P10589 423 aa15.57■□□□□ 0.08
CCDC88B-210ENST00000494566 S100A1P23297 94 aa15.57■□□□□ 0.08
CCDC88B-210ENST00000494566 PSMA1P25786 263 aaKnown RBP15.57■□□□□ 0.08
CCDC88B-210ENST00000494566 ETV5P41161 510 aa15.57■□□□□ 0.08
CCDC88B-210ENST00000494566 ETV1P50549 477 aa15.57■□□□□ 0.08
CCDC88B-210ENST00000494566 ZNF367Q7RTV3 350 aa15.57■□□□□ 0.08
CCDC88B-210ENST00000494566 OR52E1Q8NGJ3 308 aa15.57■□□□□ 0.08
CCDC88B-210ENST00000494566 TP53INP1Q96A56 240 aa15.57■□□□□ 0.08
CCDC88B-210ENST00000494566 C16orf58Q96GQ5 468 aa15.57■□□□□ 0.08
CCDC88B-210ENST00000494566 ST6GAL2Q96JF0 529 aa15.57■□□□□ 0.08
CCDC88B-210ENST00000494566 EGLN3Q9H6Z9 239 aa15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms