RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 MAPRE2Q15555 327 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 PTGISQ16647 500 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 MTHFSDQ2M296 383 aaKnown RBP1.87□□□□□ -2.11
HMGB1-208ENST00000490788 SMU1Q2TAY7 513 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 MCMDC2Q4G0Z9 681 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 CCDC58Q4VC31 144 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 LACTB2Q53H82 288 aaPredicted RBP1.87□□□□□ -2.11
HMGB1-208ENST00000490788 KLHL26Q53HC5 615 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 ANKRD20A8PQ5CZ79 823 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 AADACL4Q5VUY2 407 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 SPECC1LQ69YQ0 1117 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 NOTUMQ6P988 496 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 LRRC8BQ6P9F7 803 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 DOK6Q6PKX4 331 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 TMEM207Q6UWW9 146 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 ANGPTL8Q6UXH0 198 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 ZBTB49Q6ZSB9 765 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 RUFY3Q7L099 469 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 LPCAT2Q7L5N7 544 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 CHMP1BQ7LBR1 199 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 TRPM8Q7Z2W7 1104 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 PEX26Q7Z412 305 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 CAMKMTQ7Z624 323 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 TMPRSS11BQ86T26 416 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 AKAP14Q86UN6 197 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 P2RY8Q86VZ1 359 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 CD302Q8IX05 232 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 DOCK3Q8IZD9 2030 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 THAP8Q8NA92 274 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 TDRD5Q8NAT2 981 aaKnown RBP1.87□□□□□ -2.11
HMGB1-208ENST00000490788 POGLUT1Q8NBL1 392 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 ZBTB44Q8NCP5 570 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 MAPK1IP1LQ8NDC0 245 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 STKLD1Q8NE28 680 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 DEFB124Q8NES8 71 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 OR4K1Q8NGD4 311 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 ZNF519Q8TB69 540 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 ZNF606Q8WXB4 792 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 AZIN2Q96A70 460 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 NECTIN4Q96NY8 510 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 DGAT2Q96PD7 388 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 ABHD1Q96SE0 405 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 ATOH8Q96SQ7 321 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 DHRS9Q9BPW9 319 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 DDX50Q9BQ39 737 aaKnown RBP1.87□□□□□ -2.11
HMGB1-208ENST00000490788 SELENOSQ9BQE4 189 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 BPIFA3Q9BQP9 254 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 CRNKL1Q9BZJ0 848 aaKnown RBP1.87□□□□□ -2.11
HMGB1-208ENST00000490788 COA1Q9GZY4 146 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 ZMYND12Q9H0C1 365 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 PORCNQ9H237 461 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 EHD1Q9H4M9 534 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 C8orf33Q9H7E9 229 aaPredicted RBP1.87□□□□□ -2.11
HMGB1-208ENST00000490788 SYNDIG1Q9H7V2 258 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 NOL11Q9H8H0 719 aaKnown RBP1.87□□□□□ -2.11
HMGB1-208ENST00000490788 ANKZF1Q9H8Y5 726 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 VPS37BQ9H9H4 285 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 MRM3Q9HC36 420 aaKnown RBP1.87□□□□□ -2.11
HMGB1-208ENST00000490788 CRLF2Q9HC73 371 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 FAM114A2Q9NRY5 505 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 ZNF701Q9NV72 531 aaPredicted RBP1.87□□□□□ -2.11
HMGB1-208ENST00000490788 GID8Q9NWU2 228 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 HYPKQ9NX55 129 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 TEX10Q9NXF1 929 aaPredicted RBP1.87□□□□□ -2.11
HMGB1-208ENST00000490788 HAO2Q9NYQ3 351 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 PAK5Q9P286 719 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 MORF4L1Q9UBU8 362 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 TRIM10Q9UDY6 481 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 TRMT112Q9UI30 125 aaKnown RBP1.87□□□□□ -2.11
HMGB1-208ENST00000490788 ANAPC5Q9UJX4 755 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 HPCAL4Q9UM19 191 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 ERVK-19Q9WJR5 959 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 CHKBQ9Y259 395 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 AP3M1Q9Y2T2 418 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 HBS1LQ9Y450 684 aaKnown RBP1.87□□□□□ -2.11
HMGB1-208ENST00000490788 TRPV2Q9Y5S1 764 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 SMAD5-AS1Q9Y6J3 95 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 COMMD3-BMI1R4GMX3 469 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 MAP3K15Q6ZN16 1313 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 SPG11Q96JI7 2443 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 SETD2Q9BYW2 2564 aaPredicted RBP1.86□□□□□ -2.11
HMGB1-208ENST00000490788 C1orf232A0A0U1RR37 186 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 IQANK1A0A1B0GTG1 560 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 SPAARA0A1B0GVQ0 90 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 ARHGEF37A1IGU5 675 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 RAB19A4D1S5 217 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 SMCO2A6NFE2 343 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 MSGN1A6NI15 193 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 SLC15A5A6NIM6 579 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 C15orf61A6NNL5 157 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 SYCE1LA8MT33 242 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 ERVV-1B6SEH8 477 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 E9PBE3 544 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 F5H6K3 240 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 H0Y626 953 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 XPO1O14980 1071 aaKnown RBP1.86□□□□□ -2.11
HMGB1-208ENST00000490788 PFDN6O15212 129 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 MAPK13O15264 365 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 SSX5O60225 188 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 PLOD3O60568 738 aa1.86□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms