RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 LATO43561 262 aa2□□□□□ -2.09
VPS50-216ENST00000484954 TIMM44O43615 452 aa2□□□□□ -2.09
VPS50-216ENST00000484954 TYROBPO43914 113 aa2□□□□□ -2.09
VPS50-216ENST00000484954 GMNNO75496 209 aa2□□□□□ -2.09
VPS50-216ENST00000484954 SERF1AO75920 110 aa2□□□□□ -2.09
VPS50-216ENST00000484954 PDE5AO76074 875 aa2□□□□□ -2.09
VPS50-216ENST00000484954 GAS8O95995 478 aa2□□□□□ -2.09
VPS50-216ENST00000484954 NR2C1P13056 603 aa2□□□□□ -2.09
VPS50-216ENST00000484954 PSMB1P20618 241 aaKnown RBP2□□□□□ -2.09
VPS50-216ENST00000484954 IGHV1-2P23083 117 aa2□□□□□ -2.09
VPS50-216ENST00000484954 NT5C2P49902 561 aa2□□□□□ -2.09
VPS50-216ENST00000484954 SLC12A3P55017 1021 aa2□□□□□ -2.09
VPS50-216ENST00000484954 GEMP55040 296 aa2□□□□□ -2.09
VPS50-216ENST00000484954 UCP2P55851 309 aa2□□□□□ -2.09
VPS50-216ENST00000484954 HERV-K104P63124 156 aa2□□□□□ -2.09
VPS50-216ENST00000484954 BFSP1Q12934 665 aa2□□□□□ -2.09
VPS50-216ENST00000484954 HERPUD1Q15011 391 aa2□□□□□ -2.09
VPS50-216ENST00000484954 EXOSC7Q15024 291 aaKnown RBP2□□□□□ -2.09
VPS50-216ENST00000484954 ZIC1Q15915 447 aa2□□□□□ -2.09
VPS50-216ENST00000484954 IL17AQ16552 155 aa2□□□□□ -2.09
VPS50-216ENST00000484954 HAGHQ16775 308 aa2□□□□□ -2.09
VPS50-216ENST00000484954 GLYR1Q49A26 553 aaPredicted RBP2□□□□□ -2.09
VPS50-216ENST00000484954 DDI2Q5TDH0 399 aa2□□□□□ -2.09
VPS50-216ENST00000484954 PRAMEF8Q5VWM4 474 aa2□□□□□ -2.09
VPS50-216ENST00000484954 CDC42EP5Q6NZY7 148 aa2□□□□□ -2.09
VPS50-216ENST00000484954 CD164L2Q6UWJ8 174 aa2□□□□□ -2.09
VPS50-216ENST00000484954 RDH11Q8TC12 318 aa2□□□□□ -2.09
VPS50-216ENST00000484954 FNDC8Q8TC99 324 aa2□□□□□ -2.09
VPS50-216ENST00000484954 TFB1MQ8WVM0 346 aaKnown RBP2□□□□□ -2.09
VPS50-216ENST00000484954 HCAR1Q9BXC0 346 aa2□□□□□ -2.09
VPS50-216ENST00000484954 CACNG6Q9BXT2 260 aa2□□□□□ -2.09
VPS50-216ENST00000484954 TSPY26PQ9H489 355 aa2□□□□□ -2.09
VPS50-216ENST00000484954 DCLRE1BQ9H816 532 aa2□□□□□ -2.09
VPS50-216ENST00000484954 RNPEPL1Q9HAU8 725 aa2□□□□□ -2.09
VPS50-216ENST00000484954 PNPLA3Q9NST1 481 aa2□□□□□ -2.09
VPS50-216ENST00000484954 CNIH4Q9P003 139 aa2□□□□□ -2.09
VPS50-216ENST00000484954 DPM3Q9P2X0 92 aa2□□□□□ -2.09
VPS50-216ENST00000484954 ITM2BQ9Y287 266 aa2□□□□□ -2.09
VPS50-216ENST00000484954 KLHDC2Q9Y2U9 406 aa2□□□□□ -2.09
VPS50-216ENST00000484954 C13orf42A0A1B0GVH6 325 aa1.99□□□□□ -2.09
VPS50-216ENST00000484954 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP1.99□□□□□ -2.09
VPS50-216ENST00000484954 PDXKO00764 312 aa1.99□□□□□ -2.09
VPS50-216ENST00000484954 LCMT2O60294 686 aaKnown RBP1.99□□□□□ -2.09
VPS50-216ENST00000484954 NOL4O94818 638 aa1.99□□□□□ -2.09
VPS50-216ENST00000484954 FUT3P21217 361 aa1.99□□□□□ -2.09
VPS50-216ENST00000484954 ZP3P21754 424 aa1.99□□□□□ -2.09
VPS50-216ENST00000484954 SERPINH1P50454 418 aaKnown RBP1.99□□□□□ -2.09
VPS50-216ENST00000484954 STXBP2Q15833 593 aa1.99□□□□□ -2.09
VPS50-216ENST00000484954 KBTBD12Q3ZCT8 623 aa1.99□□□□□ -2.09
VPS50-216ENST00000484954 PAGE2BQ5JRK9 111 aa1.99□□□□□ -2.09
VPS50-216ENST00000484954 IL34Q6ZMJ4 242 aa1.99□□□□□ -2.09
VPS50-216ENST00000484954 GALNTL5Q7Z4T8 443 aa1.99□□□□□ -2.09
VPS50-216ENST00000484954 ERI1Q8IV48 349 aaKnown RBP1.99□□□□□ -2.09
VPS50-216ENST00000484954 MKXQ8IYA7 352 aa1.99□□□□□ -2.09
VPS50-216ENST00000484954 CLYBLQ8N0X4 340 aa1.99□□□□□ -2.09
VPS50-216ENST00000484954 Q8N9L7 120 aa1.99□□□□□ -2.09
VPS50-216ENST00000484954 SIDT2Q8NBJ9 832 aaKnown RBP1.99□□□□□ -2.09
VPS50-216ENST00000484954 NFAM1Q8NET5 270 aaPredicted RBP1.99□□□□□ -2.09
VPS50-216ENST00000484954 OR4F17Q8NGA8 305 aa1.99□□□□□ -2.09
VPS50-216ENST00000484954 OR4F4Q96R69 305 aa1.99□□□□□ -2.09
VPS50-216ENST00000484954 CPXM1Q96SM3 734 aa1.99□□□□□ -2.09
VPS50-216ENST00000484954 DPH7Q9BTV6 452 aa1.99□□□□□ -2.09
VPS50-216ENST00000484954 TM2D1Q9BX74 207 aa1.99□□□□□ -2.09
VPS50-216ENST00000484954 ELOVL4Q9GZR5 314 aa1.99□□□□□ -2.09
VPS50-216ENST00000484954 NAPBQ9H115 298 aa1.99□□□□□ -2.09
VPS50-216ENST00000484954 NRBP1Q9UHY1 535 aa1.99□□□□□ -2.09
VPS50-216ENST00000484954 ZNF221Q9UK13 617 aa1.99□□□□□ -2.09
VPS50-216ENST00000484954 FLVCR1Q9Y5Y0 555 aa1.99□□□□□ -2.09
VPS50-216ENST00000484954 ARHGAP23Q9P227 1491 aa1.99□□□□□ -2.09
VPS50-216ENST00000484954 SLC33A1O00400 549 aaPredicted RBP1.98□□□□□ -2.09
VPS50-216ENST00000484954 RTN2O75298 545 aa1.98□□□□□ -2.09
VPS50-216ENST00000484954 UGT1A6P19224 532 aa1.98□□□□□ -2.09
VPS50-216ENST00000484954 RBMXP38159 391 aaKnown RBP1.98□□□□□ -2.09
VPS50-216ENST00000484954 HNRNPA3P51991 378 aaKnown RBP1.98□□□□□ -2.09
VPS50-216ENST00000484954 SMSP52788 366 aa1.98□□□□□ -2.09
VPS50-216ENST00000484954 ASIC1P78348 528 aa1.98□□□□□ -2.09
VPS50-216ENST00000484954 ZKSCAN8Q15776 578 aaPredicted RBP1.98□□□□□ -2.09
VPS50-216ENST00000484954 SPATA46Q5T0L3 261 aa1.98□□□□□ -2.09
VPS50-216ENST00000484954 SYCP3Q8IZU3 236 aa1.98□□□□□ -2.09
VPS50-216ENST00000484954 ZNF433Q8N7K0 673 aaPredicted RBP1.98□□□□□ -2.09
VPS50-216ENST00000484954 OR4A16Q8NH70 328 aa1.98□□□□□ -2.09
VPS50-216ENST00000484954 RNASE8Q8TDE3 154 aaKnown RBP1.98□□□□□ -2.09
VPS50-216ENST00000484954 LHX4Q969G2 390 aa1.98□□□□□ -2.09
VPS50-216ENST00000484954 IL22RA2Q969J5 263 aa1.98□□□□□ -2.09
VPS50-216ENST00000484954 RPGRIP1Q96KN7 1286 aa1.98□□□□□ -2.09
VPS50-216ENST00000484954 OPN3Q9H1Y3 402 aaPredicted RBP1.98□□□□□ -2.09
VPS50-216ENST00000484954 GANQ9H2C0 597 aa1.98□□□□□ -2.09
VPS50-216ENST00000484954 MAGEF1Q9HAY2 307 aa1.98□□□□□ -2.09
VPS50-216ENST00000484954 TERF2IPQ9NYB0 399 aa1.98□□□□□ -2.09
VPS50-216ENST00000484954 SLC9A8Q9Y2E8 581 aa1.98□□□□□ -2.09
VPS50-216ENST00000484954 SYNJ2O15056 1496 aa1.97□□□□□ -2.09
VPS50-216ENST00000484954 HOXB7P09629 217 aa1.97□□□□□ -2.09
VPS50-216ENST00000484954 VCLP18206 1134 aa1.97□□□□□ -2.09
VPS50-216ENST00000484954 PTBP1P26599 531 aaKnown RBP eCLIP1.97□□□□□ -2.09
VPS50-216ENST00000484954 STIP1P31948 543 aaKnown RBP1.97□□□□□ -2.09
VPS50-216ENST00000484954 ACADSBP45954 432 aa1.97□□□□□ -2.09
VPS50-216ENST00000484954 CAV2P51636 162 aa1.97□□□□□ -2.09
VPS50-216ENST00000484954 RAG2P55895 527 aa1.97□□□□□ -2.09
VPS50-216ENST00000484954 CDKL1Q00532 357 aa1.97□□□□□ -2.09
VPS50-216ENST00000484954 KRT31Q15323 416 aa1.97□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms