RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 OR9G9P0C7N8 305 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 FOSL2P15408 326 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 CCNA2P20248 432 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 IL10P22301 178 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 LMO2P25791 158 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 RPA1P27694 616 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 MAT2AP31153 395 aaKnown RBP2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 HSPA1LP34931 641 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 SLC1A4P43007 532 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 NPY2RP49146 381 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 NDST1P52848 882 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 BTG3Q14201 252 aaPredicted RBP2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 EMC2Q15006 297 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 CCL14Q16627 93 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 ZNF528Q3MIS6 628 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 UNC50Q53HI1 259 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 TOR1AIP1Q5JTV8 583 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 C9orf66Q5T8R8 295 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 DDI2Q5TDH0 399 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 WDR25Q64LD2 544 aaPredicted RBP2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 RHBDD2Q6NTF9 364 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 ZCCHC12Q6PEW1 402 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 ISLR2Q6UXK2 745 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 TMEM26Q6ZUK4 368 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 ASRGL1Q7L266 308 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 CCDC71Q8IV32 467 aaPredicted RBP2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 KDM8Q8N371 416 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 SAMD12Q8N8I0 201 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 CSNK1G2-AS1Q8NCQ2 148 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 CNNM3Q8NE01 707 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 FBXO25Q8TCJ0 367 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 TMEM37Q8WXS4 190 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 PHYHIPQ92561 330 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 TMEM45BQ96B21 275 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 MRPL38Q96DV4 380 aaKnown RBP2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 SAMD8Q96LT4 415 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 FAM111AQ96PZ2 611 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 NLNQ9BYT8 704 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 KRT23Q9C075 422 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 LRRCC1Q9C099 1032 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 LIME1Q9H400 295 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 ADAM22Q9P0K1 906 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 ZNF581Q9P0T4 197 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 MIOXQ9UGB7 285 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 TUBGCP4Q9UGJ1 667 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 IKZF3Q9UKT9 509 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 SPATA2Q9UM82 520 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 PLEKHA6Q9Y2H5 1048 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 FBXO7Q9Y3I1 522 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 ZNF175Q9Y473 711 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 ATG4BQ9Y4P1 393 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 SYNJ2O15056 1496 aa2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 AFF2P51816 1311 aa2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 A0A1B0GTH9 108 aa2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 BICDL2A1A5D9 508 aa2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 C19orf81C9J6K1 198 aa2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 K7ERI5 159 aa2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 CDX4O14627 284 aaPredicted RBP2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 TXNL1O43396 289 aa2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 SSX5O60225 188 aa2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 STAM2O75886 525 aa2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 SEMA4FO95754 770 aa2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 PTBP3O95758 552 aaKnown RBP2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 OAS1P00973 400 aaKnown RBP2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 HCKP08631 526 aa2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 CYP11B1P15538 503 aa2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 PTPN4P29074 926 aa2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 ELK3P41970 407 aa2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 SLC6A8P48029 635 aa2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 GSK3BP49841 420 aa2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 ACY1Q03154 408 aa2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 KARSQ15046 597 aaKnown RBP2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 ZKSCAN8Q15776 578 aaPredicted RBP2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 HKDC1Q2TB90 917 aa2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 AGKQ53H12 422 aa2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 TCHHL1Q5QJ38 904 aaPredicted RBP2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 LIPKQ5VXJ0 399 aa2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 FAM159AQ6UWV7 190 aa2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 OLFM4Q6UX06 510 aa2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 AMZ2Q86W34 360 aa2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 COLGALT1Q8NBJ5 622 aa2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 MRAPQ8TCY5 172 aa2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 HSD17B14Q9BPX1 270 aa2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 APOL2Q9BQE5 337 aa2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 NACA2Q9H009 215 aa2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 Q9HAA7 133 aa2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 IL1RL2Q9HB29 575 aa2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 ZNF446Q9NWS9 450 aa2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 SOHLH2Q9NX45 425 aa2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 TAS2R16Q9NYV7 291 aa2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 EIF3KQ9UBQ5 218 aaKnown RBP2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 IL20RAQ9UHF4 553 aa2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 HOOK1Q9UJC3 728 aaKnown RBP2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 MGAT4AQ9UM21 535 aa2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 PLA2G4CQ9UP65 541 aa2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 NAALAD2Q9Y3Q0 740 aa2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 CPQQ9Y646 472 aa2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 CLCA3PQ9Y6N3 262 aa2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 TDRD6O60522 2096 aaKnown RBP2.28□□□□□ -2.04
CCDC88A-212ENST00000474059 A0A0A6YYD4 124 aa2.27□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms