RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 CDK3Q00526 305 aa12.65□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 TGFBIQ15582 683 aa12.65□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 LIN52Q52LA3 116 aa12.65□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 BCL2L15Q5TBC7 163 aa12.65□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 ZNF461Q8TAF7 563 aa12.65□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 CLEC4DQ8WXI8 215 aa12.65□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 OXSMQ9NWU1 459 aa12.65□□□□□ -0.38
NPHP3-ACAD11-201ENST00000471702 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.65□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 COCHO43405 550 aa12.65□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 RP2O75695 350 aa12.65□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 GJB5O95377 273 aa12.65□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 YES1P07947 543 aa12.65□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 CHRM4P08173 479 aa12.65□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 CASP7P55210 303 aa12.65□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 HERC3Q15034 1050 aa12.65□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 COL28A1Q2UY09 1125 aa12.65□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 KRBOX4Q5JUW0 171 aa12.65□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 TMEM71Q6P5X7 295 aa12.65□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 KRTCAP2Q8N6L1 136 aa12.65□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 OR51L1Q8NGJ5 315 aa12.65□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 ACOT11Q8WXI4 607 aaPredicted RBP12.65□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 COG8Q96MW5 612 aa12.65□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 ITPAQ9BY32 194 aa12.65□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 CD72P21854 359 aa12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 IL1R2P27930 398 aa12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 NCBP2-AS2Q69YL0 99 aa12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 ZGRF1Q86YA3 2104 aa12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 NRROSQ86YC3 692 aa12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 ZFP90Q8TF47 636 aa12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 C15orf40Q8WUR7 153 aa12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 WDR92Q96MX6 357 aa12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 RBM14Q96PK6 669 aaKnown RBP12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 IGSF9Q9P2J2 1179 aa12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 GABRQQ9UN88 632 aa12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 ZNF705FA8MVS1 300 aaPredicted RBP12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 HLA-DPB1P04440 258 aa12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 ZNF705DP0CH99 300 aaPredicted RBP12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 ZNF705BP0CI00 300 aaPredicted RBP12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 CHRNB2P17787 502 aa12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 ACSM3Q53FZ2 586 aa12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 PXKQ7Z7A4 578 aa12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 URM1Q9BTM9 101 aaKnown RBP12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 MAP2K7O14733 419 aa12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 CATSPEREQ5SY80 951 aa12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 SLX4IPQ5VYV7 408 aa12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 DCP2Q8IU60 420 aaKnown RBP12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 PIAS4Q8N2W9 510 aaPredicted RBP12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 HORMAD2Q8N7B1 307 aa12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 ADIPOR1Q96A54 375 aa12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 RXFP3Q9NSD7 469 aa12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 STARD5Q9NSY2 213 aa12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 DEPDC5O75140 1603 aa12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 A8MXE2 369 aa12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 DVL1O14640 695 aa12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 FRKP42685 505 aaPredicted RBP12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 DVL1P1P54792 670 aaPredicted RBP12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 TMEM201Q5SNT2 666 aa12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 PRAMEF8Q5VWM4 474 aa12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 PRAMEF7Q5VXH5 474 aa12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 ZNF852Q6ZMS4 543 aa12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 MAPKAP1Q9BPZ7 522 aa12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 GJD2Q9UKL4 321 aa12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 MANBAO00462 879 aa12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 HSPB6O14558 160 aa12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 MAOBP27338 520 aa12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 GCH1P30793 250 aa12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 APLNRP35414 380 aa12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 STT3AP46977 705 aa12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 SLC30A2Q9BRI3 323 aa12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 NKX2-4Q9H2Z4 354 aa12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 RBPJLQ9UBG7 517 aa12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 PTPRUQ92729 1446 aa12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 KDELR3O43731 214 aa12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 SHC2P98077 582 aa12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 GBX1Q14549 363 aa12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 GINS1Q14691 196 aa12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 RABL3Q5HYI8 236 aa12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 ATF6BQ99941 703 aa12.64□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 A0A0U1RQF3 1178 aa12.63□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 SLC31A2O15432 143 aa12.63□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 GABREP78334 506 aa12.63□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 OR2T33Q8NG76 320 aa12.63□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 RPF2Q9H7B2 306 aaKnown RBP12.63□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 ZBTB26Q9HCK0 441 aa12.63□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 EXTL2Q9UBQ6 330 aa12.63□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 ZNF254O75437 659 aa12.63□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 GRB2P62993 217 aaKnown RBP12.63□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 RPP30P78346 268 aaKnown RBP12.63□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 MOGSQ13724 837 aa12.63□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 SPHK2Q9NRA0 654 aa12.63□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 CAMK2AQ9UQM7 478 aa12.63□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 POLEQ07864 2286 aa12.63□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 MTMR11A4FU01 709 aa12.63□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 SLC22A1O15245 554 aa12.63□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 HTR3BO95264 441 aa12.63□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 F2RL3Q96RI0 385 aa12.63□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 SECISBP2Q96T21 854 aaKnown RBP12.63□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 ST6GALNAC5Q9BVH7 336 aa12.63□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 MINDY3Q9H8M7 445 aa12.63□□□□□ -0.39
NPHP3-ACAD11-201ENST00000471702 ERVK-19Q9WJR5 959 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms