RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP4.76□□□□□ -1.65
PTPN4-209ENST00000469511 ARFGEF3Q5TH69 2177 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 LRIT2A6NDA9 550 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 FRG2CA6NGY1 282 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 ERI2A8K979 691 aaKnown RBP4.75□□□□□ -1.65
PTPN4-209ENST00000469511 E7EVH7 732 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 H3BMM5 538 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 PLOD2O00469 737 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 HS3ST1O14792 307 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 NPHS1O60500 1241 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 GAS8O95995 478 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 WNT11O96014 354 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 CD8AP01732 235 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 SERPINA6P08185 405 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 DANCRP0C864 163 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 POU2F1P14859 743 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 CPN1P15169 458 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 OGNP20774 298 aaKnown RBP4.75□□□□□ -1.65
PTPN4-209ENST00000469511 IGFBP5P24593 272 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 DPP4P27487 766 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 GABRB3P28472 473 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 IDUAP35475 653 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 FDFT1P37268 417 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 PTGDSP41222 190 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 GDF5P43026 501 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 CLDN15P56746 228 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 CLDN18P56856 261 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 RWDD2BP57060 319 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 RPL11P62913 178 aaKnown RBP4.75□□□□□ -1.65
PTPN4-209ENST00000469511 HERVK_113P63132 956 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 ERVK-8P63133 956 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 STX4Q12846 297 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 FAPQ12884 760 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 LSAMPQ13449 338 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 RCAN2Q14206 197 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 CSHL1Q14406 222 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 NTRK2Q16620 822 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 TMEM249Q2WGJ8 235 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 FAM174BQ3ZCQ3 159 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 FBXO48Q5FWF7 155 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 RBM20Q5T481 1227 aaKnown RBP4.75□□□□□ -1.65
PTPN4-209ENST00000469511 ZNF470Q6ECI4 717 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 MRNIPQ6NTE8 343 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 NEPROQ6NW34 567 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 STRA8Q7Z7C7 330 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 SDCCAG8Q86SQ7 713 aaPredicted RBP4.75□□□□□ -1.65
PTPN4-209ENST00000469511 TMPRSS11BQ86T26 416 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 MTDHQ86UE4 582 aaKnown RBP4.75□□□□□ -1.65
PTPN4-209ENST00000469511 ZNF595Q8IYB9 648 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 RNF175Q8N4F7 328 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.75□□□□□ -1.65
PTPN4-209ENST00000469511 ZNF611Q8N823 705 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 CNEP1R1Q8N9A8 125 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 OR14A16Q8NHC5 309 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 NUBPLQ8TB37 319 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 SPPL2AQ8TCT8 520 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 CCT6BQ92526 530 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 FIG4Q92562 907 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 ZNF597Q96LX8 424 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 PANX2Q96RD6 677 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 F2RL3Q96RI0 385 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 JMJD8Q96S16 334 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 NODALQ96S42 347 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 TMEM204Q9BSN7 226 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 SORBS1Q9BX66 1292 aaKnown RBP4.75□□□□□ -1.65
PTPN4-209ENST00000469511 ERVK-6Q9BXR3 956 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 FAM129AQ9BZQ8 928 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 KLHL4Q9C0H6 718 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 NAT10Q9H0A0 1025 aaKnown RBP4.75□□□□□ -1.65
PTPN4-209ENST00000469511 CDIP1Q9H305 208 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 PIGMQ9H3S5 423 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 CXorf56Q9H5V9 222 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 CLK4Q9HAZ1 481 aaKnown RBP4.75□□□□□ -1.65
PTPN4-209ENST00000469511 PARVBQ9HBI1 364 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 SERHLQ9NQF3 203 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 C19orf73Q9NVV2 129 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 PSD3Q9NYI0 1048 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 CNIH4Q9P003 139 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 ERVK-19Q9WJR5 959 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 LIPT1Q9Y234 373 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 SLC22A14Q9Y267 594 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 SBDSQ9Y3A5 250 aaKnown RBP eCLIP4.75□□□□□ -1.65
PTPN4-209ENST00000469511 PCDHA9Q9Y5H5 950 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 PCDHA13Q9Y5I0 950 aa4.75□□□□□ -1.65
PTPN4-209ENST00000469511 TNPO3Q9Y5L0 923 aaKnown RBP4.75□□□□□ -1.65
PTPN4-209ENST00000469511 MAGED1Q9Y5V3 778 aaPredicted RBP4.75□□□□□ -1.65
PTPN4-209ENST00000469511 ZCWPW2A0A1B0GU75 182 aa4.74□□□□□ -1.65
PTPN4-209ENST00000469511 FAM234BA2RU67 622 aa4.74□□□□□ -1.65
PTPN4-209ENST00000469511 GRID2IPA4D2P6 1211 aa4.74□□□□□ -1.65
PTPN4-209ENST00000469511 CTAGE9A4FU28 777 aa4.74□□□□□ -1.65
PTPN4-209ENST00000469511 NOTOA8MTQ0 251 aa4.74□□□□□ -1.65
PTPN4-209ENST00000469511 H0Y3Z8 333 aa4.74□□□□□ -1.65
PTPN4-209ENST00000469511 C16orf97H3BN30 126 aa4.74□□□□□ -1.65
PTPN4-209ENST00000469511 EIF3FO00303 357 aaPredicted RBP4.74□□□□□ -1.65
PTPN4-209ENST00000469511 LIASO43766 372 aa4.74□□□□□ -1.65
PTPN4-209ENST00000469511 B3GALT2O43825 422 aa4.74□□□□□ -1.65
PTPN4-209ENST00000469511 SSX4O60224 188 aa4.74□□□□□ -1.65
PTPN4-209ENST00000469511 MFAP3LO75121 409 aa4.74□□□□□ -1.65
PTPN4-209ENST00000469511 NTN1O95631 604 aa4.74□□□□□ -1.65
PTPN4-209ENST00000469511 HPXP02790 462 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms