RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 TNFRSF12AQ9NP84 129 aa19.48■□□□□ 0.71
HMGB3-205ENST00000455596 SLC35C2Q9NQQ7 365 aa19.48■□□□□ 0.71
HMGB3-205ENST00000455596 UNC79Q9P2D8 2635 aa19.48■□□□□ 0.71
HMGB3-205ENST00000455596 FIGNL2A6NMB9 653 aa19.47■□□□□ 0.71
HMGB3-205ENST00000455596 ACOX3O15254 700 aa19.47■□□□□ 0.71
HMGB3-205ENST00000455596 TRIM13O60858 407 aa19.47■□□□□ 0.71
HMGB3-205ENST00000455596 TRIM3O75382 744 aaPredicted RBP19.47■□□□□ 0.71
HMGB3-205ENST00000455596 PPM1BO75688 479 aa19.47■□□□□ 0.71
HMGB3-205ENST00000455596 SNX4O95219 450 aa19.47■□□□□ 0.71
HMGB3-205ENST00000455596 SLU7O95391 586 aaKnown RBP19.47■□□□□ 0.71
HMGB3-205ENST00000455596 ABCB1P08183 1280 aaPredicted RBP19.47■□□□□ 0.71
HMGB3-205ENST00000455596 DDCP20711 480 aa19.47■□□□□ 0.71
HMGB3-205ENST00000455596 PPICP45877 212 aa19.47■□□□□ 0.71
HMGB3-205ENST00000455596 EMDP50402 254 aa19.47■□□□□ 0.71
HMGB3-205ENST00000455596 CEBPEQ15744 281 aa19.47■□□□□ 0.71
HMGB3-205ENST00000455596 BICRALQ6AI39 1079 aa19.47■□□□□ 0.71
HMGB3-205ENST00000455596 WDR93Q6P2C0 686 aa19.47■□□□□ 0.71
HMGB3-205ENST00000455596 ZNF585AQ6P3V2 769 aa19.47■□□□□ 0.71
HMGB3-205ENST00000455596 EMBQ6PCB8 327 aa19.47■□□□□ 0.71
HMGB3-205ENST00000455596 BANPQ8N9N5 519 aa19.47■□□□□ 0.71
HMGB3-205ENST00000455596 OR5M9Q8NGP3 310 aa19.47■□□□□ 0.71
HMGB3-205ENST00000455596 OR9A2Q8NGT5 310 aa19.47■□□□□ 0.71
HMGB3-205ENST00000455596 FAM76AQ8TAV0 307 aa19.47■□□□□ 0.71
HMGB3-205ENST00000455596 AENQ8WTP8 325 aaKnown RBP19.47■□□□□ 0.71
HMGB3-205ENST00000455596 RND1Q92730 232 aa19.47■□□□□ 0.71
HMGB3-205ENST00000455596 ERP27Q96DN0 273 aa19.47■□□□□ 0.71
HMGB3-205ENST00000455596 RILPQ96NA2 401 aa19.47■□□□□ 0.71
HMGB3-205ENST00000455596 ANGPTL4Q9BY76 406 aa19.47■□□□□ 0.71
HMGB3-205ENST00000455596 ROPN1BQ9BZX4 212 aaPredicted RBP19.47■□□□□ 0.71
HMGB3-205ENST00000455596 ROPN1Q9HAT0 212 aaPredicted RBP19.47■□□□□ 0.71
HMGB3-205ENST00000455596 ACKR4Q9NPB9 350 aa19.47■□□□□ 0.71
HMGB3-205ENST00000455596 LGALS13Q9UHV8 139 aa19.47■□□□□ 0.71
HMGB3-205ENST00000455596 ACAD8Q9UKU7 415 aa19.47■□□□□ 0.71
HMGB3-205ENST00000455596 POLR3HQ9Y535 204 aaPredicted RBP19.47■□□□□ 0.71
HMGB3-205ENST00000455596 DRD5P21918 477 aa19.46■□□□□ 0.71
HMGB3-205ENST00000455596 GDF1P27539 372 aa19.46■□□□□ 0.71
HMGB3-205ENST00000455596 MPIP34949 423 aa19.46■□□□□ 0.71
HMGB3-205ENST00000455596 CASP3P42574 277 aa19.46■□□□□ 0.71
HMGB3-205ENST00000455596 MASP1P48740 699 aa19.46■□□□□ 0.71
HMGB3-205ENST00000455596 PLCXD2Q0VAA5 305 aa19.46■□□□□ 0.71
HMGB3-205ENST00000455596 ERCC6LQ2NKX8 1250 aa19.46■□□□□ 0.71
HMGB3-205ENST00000455596 WLSQ5T9L3 541 aa19.46■□□□□ 0.71
HMGB3-205ENST00000455596 CLEC6AQ6EIG7 209 aa19.46■□□□□ 0.71
HMGB3-205ENST00000455596 NUP54Q7Z3B4 507 aa19.46■□□□□ 0.71
HMGB3-205ENST00000455596 PACS2Q86VP3 889 aa19.46■□□□□ 0.71
HMGB3-205ENST00000455596 SRRM1Q8IYB3 904 aaKnown RBP19.46■□□□□ 0.71
HMGB3-205ENST00000455596 FAM9CQ8IZT9 166 aa19.46■□□□□ 0.71
HMGB3-205ENST00000455596 LIX1Q8N485 282 aa19.46■□□□□ 0.71
HMGB3-205ENST00000455596 RPRMLQ8N4K4 120 aa19.46■□□□□ 0.71
HMGB3-205ENST00000455596 ASB5Q8WWX0 329 aa19.46■□□□□ 0.71
HMGB3-205ENST00000455596 KAT2AQ92830 837 aa19.46■□□□□ 0.71
HMGB3-205ENST00000455596 OMA1Q96E52 524 aa19.46■□□□□ 0.71
HMGB3-205ENST00000455596 METTL2AQ96IZ6 378 aaKnown RBP19.46■□□□□ 0.71
HMGB3-205ENST00000455596 BBS4Q96RK4 519 aa19.46■□□□□ 0.71
HMGB3-205ENST00000455596 TRMOQ9BU70 441 aa19.46■□□□□ 0.71
HMGB3-205ENST00000455596 GATA5Q9BWX5 397 aaPredicted RBP19.46■□□□□ 0.71
HMGB3-205ENST00000455596 MYNNQ9NPC7 610 aa19.46■□□□□ 0.71
HMGB3-205ENST00000455596 MIEF1Q9NQG6 463 aa19.46■□□□□ 0.71
HMGB3-205ENST00000455596 SENP1Q9P0U3 644 aa19.46■□□□□ 0.71
HMGB3-205ENST00000455596 TNFRSF10DQ9UBN6 386 aa19.46■□□□□ 0.71
HMGB3-205ENST00000455596 FRG2CA6NGY1 282 aa19.45■□□□□ 0.7
HMGB3-205ENST00000455596 SLC28A1O00337 649 aa19.45■□□□□ 0.7
HMGB3-205ENST00000455596 COX6B1P14854 86 aa19.45■□□□□ 0.7
HMGB3-205ENST00000455596 ENDOUP21128 410 aaKnown RBP19.45■□□□□ 0.7
HMGB3-205ENST00000455596 ACVR2AP27037 513 aa19.45■□□□□ 0.7
HMGB3-205ENST00000455596 FAM71E1Q6IPT2 247 aa19.45■□□□□ 0.7
HMGB3-205ENST00000455596 NOXRED1Q6NXP6 359 aa19.45■□□□□ 0.7
HMGB3-205ENST00000455596 TMEM81Q6P7N7 255 aa19.45■□□□□ 0.7
HMGB3-205ENST00000455596 ACAD11Q709F0 780 aa19.45■□□□□ 0.7
HMGB3-205ENST00000455596 TICAM1Q8IUC6 712 aa19.45■□□□□ 0.7
HMGB3-205ENST00000455596 NEIL3Q8TAT5 605 aa19.45■□□□□ 0.7
HMGB3-205ENST00000455596 CAVIN3Q969G5 261 aa19.45■□□□□ 0.7
HMGB3-205ENST00000455596 FAM111AQ96PZ2 611 aa19.45■□□□□ 0.7
HMGB3-205ENST00000455596 SLC6A15Q9H2J7 730 aa19.45■□□□□ 0.7
HMGB3-205ENST00000455596 METTL7AQ9H8H3 244 aa19.45■□□□□ 0.7
HMGB3-205ENST00000455596 ANKRA2Q9H9E1 313 aa19.45■□□□□ 0.7
HMGB3-205ENST00000455596 WBP11Q9Y2W2 641 aaKnown RBP19.45■□□□□ 0.7
HMGB3-205ENST00000455596 CCL27Q9Y4X3 112 aa19.45■□□□□ 0.7
HMGB3-205ENST00000455596 AZIN1O14977 448 aa19.44■□□□□ 0.7
HMGB3-205ENST00000455596 RGS14O43566 566 aa19.44■□□□□ 0.7
HMGB3-205ENST00000455596 ZNF500O60304 480 aaPredicted RBP19.44■□□□□ 0.7
HMGB3-205ENST00000455596 WDR1O75083 606 aa19.44■□□□□ 0.7
HMGB3-205ENST00000455596 SEC22BO75396 215 aa19.44■□□□□ 0.7
HMGB3-205ENST00000455596 CHEK2O96017 543 aa19.44■□□□□ 0.7
HMGB3-205ENST00000455596 SNRPB2P08579 225 aaKnown RBP19.44■□□□□ 0.7
HMGB3-205ENST00000455596 PRPH2P23942 346 aa19.44■□□□□ 0.7
HMGB3-205ENST00000455596 ALDH3A1P30838 453 aa19.44■□□□□ 0.7
HMGB3-205ENST00000455596 PTGER4P35408 488 aa19.44■□□□□ 0.7
HMGB3-205ENST00000455596 NUP107P57740 925 aa19.44■□□□□ 0.7
HMGB3-205ENST00000455596 PMPCAQ10713 525 aa19.44■□□□□ 0.7
HMGB3-205ENST00000455596 HOMEZQ8IX15 550 aa19.44■□□□□ 0.7
HMGB3-205ENST00000455596 MCEMP1Q8IX19 187 aa19.44■□□□□ 0.7
HMGB3-205ENST00000455596 PUM2Q8TB72 1066 aaKnown RBP eCLIP19.44■□□□□ 0.7
HMGB3-205ENST00000455596 HGDQ93099 445 aa19.44■□□□□ 0.7
HMGB3-205ENST00000455596 TMEM41AQ96HV5 264 aa19.44■□□□□ 0.7
HMGB3-205ENST00000455596 STMN4Q9H169 189 aaPredicted RBP19.44■□□□□ 0.7
HMGB3-205ENST00000455596 SPRR3Q9UBC9 169 aa19.44■□□□□ 0.7
HMGB3-205ENST00000455596 NOL12Q9UGY1 213 aaKnown RBP eCLIP19.44■□□□□ 0.7
HMGB3-205ENST00000455596 RNF6Q9Y252 685 aa19.44■□□□□ 0.7
HMGB3-205ENST00000455596 GPR55Q9Y2T6 319 aaPredicted RBP19.44■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms