RNA–Protein interactions for RNA: ENST00000427110.6

PTPRC-208, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best)

Gene PTPRC, Length 264 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-208ENST00000427110 HMGCLP35914 325 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 TRIM23P36406 574 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 MAGEA4P43358 317 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 RABIFP47224 123 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 PGFP49763 221 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 MFAP2P55001 183 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 SRYQ05066 204 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 GAMTQ14353 236 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 ANKRD55Q3KP44 614 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 C14orf28Q4W4Y0 310 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 AGKQ53H12 422 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 EIPR1Q53HC9 387 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 VWA2Q5GFL6 755 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 NHLRC3Q5JS37 347 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 IL23RQ5VWK5 629 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 WDR25Q64LD2 544 aaPredicted RBP1.94□□□□□ -2.1
PTPRC-208ENST00000427110 OLFM4Q6UX06 510 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 DPY19L2P2Q6ZN68 376 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 TMEM26Q6ZUK4 368 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 C1orf186Q6ZWK4 172 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 TSEN54Q7Z6J9 526 aaKnown RBP1.94□□□□□ -2.1
PTPRC-208ENST00000427110 P2RY8Q86VZ1 359 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 GPBP1Q86WP2 473 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 SPAG16Q8N0X2 631 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 ZNF619Q8N2I2 560 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 ARL14Q8N4G2 192 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 ANKRD20A12PQ8NF67 263 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 OR52J3Q8NH60 311 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 U2AF1L4Q8WU68 220 aaKnown RBP1.94□□□□□ -2.1
PTPRC-208ENST00000427110 ITLN1Q8WWA0 313 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 LHX4Q969G2 390 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 FAM111AQ96PZ2 611 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 TSPAN18Q96SJ8 248 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 CBWD1Q9BRT8 395 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 RPP25Q9BUL9 199 aaKnown RBP1.94□□□□□ -2.1
PTPRC-208ENST00000427110 RAB17Q9H0T7 212 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 C1orf21Q9H246 121 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 FAM124BQ9H5Z6 455 aaPredicted RBP1.94□□□□□ -2.1
PTPRC-208ENST00000427110 TIGARQ9NQ88 270 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 CUTCQ9NTM9 273 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 LHX3Q9UBR4 397 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 BCAP29Q9UHQ4 241 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 EMCNQ9ULC0 261 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 WDR62O43379 1518 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 MAPKBP1O60336 1514 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 EHBP1L1Q8N3D4 1523 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 UGGT2Q9NYU1 1516 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 GPRASP1Q5JY77 1395 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 HECW1Q76N89 1606 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 NPC1L1Q9UHC9 1359 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 POLR1AO95602 1720 aaPredicted RBP1.94□□□□□ -2.1
PTPRC-208ENST00000427110 COL2A1P02458 1487 aaPredicted RBP1.94□□□□□ -2.1
PTPRC-208ENST00000427110 GRIN2BQ13224 1484 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 CCDC18Q5T9S5 1454 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 IQGAP2Q13576 1575 aa1.93□□□□□ -2.1
PTPRC-208ENST00000427110 SETD5Q9C0A6 1442 aa1.93□□□□□ -2.1
PTPRC-208ENST00000427110 ADCY10Q96PN6 1610 aa1.93□□□□□ -2.1
PTPRC-208ENST00000427110 PTPN23Q9H3S7 1636 aa1.93□□□□□ -2.1
PTPRC-208ENST00000427110 TRAV9-2A0A087WT02 112 aa1.93□□□□□ -2.1
PTPRC-208ENST00000427110 A0A0A6YYD4 124 aa1.93□□□□□ -2.1
PTPRC-208ENST00000427110 A0A1W2PPR1 153 aa1.93□□□□□ -2.1
PTPRC-208ENST00000427110 H3BMH7 237 aa1.93□□□□□ -2.1
PTPRC-208ENST00000427110 RASGRF2O14827 1237 aa1.93□□□□□ -2.1
PTPRC-208ENST00000427110 BUB1O43683 1085 aa1.93□□□□□ -2.1
PTPRC-208ENST00000427110 RANBP6O60518 1105 aaKnown RBP1.93□□□□□ -2.1
PTPRC-208ENST00000427110 PDE5AO76074 875 aa1.93□□□□□ -2.1
PTPRC-208ENST00000427110 ECDO95905 644 aaPredicted RBP1.93□□□□□ -2.1
PTPRC-208ENST00000427110 GOT2P00505 430 aaKnown RBP1.93□□□□□ -2.1
PTPRC-208ENST00000427110 PDGFBP01127 241 aaPredicted RBP1.93□□□□□ -2.1
PTPRC-208ENST00000427110 TGFAP01135 160 aa1.93□□□□□ -2.1
PTPRC-208ENST00000427110 MELTFP08582 738 aa1.93□□□□□ -2.1
PTPRC-208ENST00000427110 SNRPCP09234 159 aaKnown RBP1.93□□□□□ -2.1
PTPRC-208ENST00000427110 GHRP10912 638 aa1.93□□□□□ -2.1
PTPRC-208ENST00000427110 ARF4P18085 180 aaPredicted RBP1.93□□□□□ -2.1
PTPRC-208ENST00000427110 IL4RP24394 825 aa1.93□□□□□ -2.1
PTPRC-208ENST00000427110 ACP1P24666 158 aa1.93□□□□□ -2.1
PTPRC-208ENST00000427110 PRDX2P32119 198 aa1.93□□□□□ -2.1
PTPRC-208ENST00000427110 SLC6A8P48029 635 aa1.93□□□□□ -2.1
PTPRC-208ENST00000427110 ARHGDIAP52565 204 aa1.93□□□□□ -2.1
PTPRC-208ENST00000427110 ATXN3P54252 364 aaPredicted RBP1.93□□□□□ -2.1
PTPRC-208ENST00000427110 HMGCS2P54868 508 aa1.93□□□□□ -2.1
PTPRC-208ENST00000427110 GMFBP60983 142 aa1.93□□□□□ -2.1
PTPRC-208ENST00000427110 SNX1Q13596 522 aa1.93□□□□□ -2.1
PTPRC-208ENST00000427110 EIF2B1Q14232 305 aaKnown RBP1.93□□□□□ -2.1
PTPRC-208ENST00000427110 KARSQ15046 597 aaKnown RBP1.93□□□□□ -2.1
PTPRC-208ENST00000427110 ZNF239Q16600 458 aaKnown RBP1.93□□□□□ -2.1
PTPRC-208ENST00000427110 CCL14Q16627 93 aa1.93□□□□□ -2.1
PTPRC-208ENST00000427110 PCK2Q16822 640 aa1.93□□□□□ -2.1
PTPRC-208ENST00000427110 SLC22A6Q4U2R8 563 aa1.93□□□□□ -2.1
PTPRC-208ENST00000427110 PARP10Q53GL7 1025 aa1.93□□□□□ -2.1
PTPRC-208ENST00000427110 CCDC92Q53HC0 331 aaPredicted RBP1.93□□□□□ -2.1
PTPRC-208ENST00000427110 TCTEX1D4Q5JR98 221 aa1.93□□□□□ -2.1
PTPRC-208ENST00000427110 TOR1AIP1Q5JTV8 583 aa1.93□□□□□ -2.1
PTPRC-208ENST00000427110 LDLRAP1Q5SW96 308 aa1.93□□□□□ -2.1
PTPRC-208ENST00000427110 BEND6Q5SZJ8 279 aaPredicted RBP1.93□□□□□ -2.1
PTPRC-208ENST00000427110 FAM219BQ5XKK7 198 aa1.93□□□□□ -2.1
PTPRC-208ENST00000427110 RAET1GQ6H3X3 334 aa1.93□□□□□ -2.1
PTPRC-208ENST00000427110 RHBDD2Q6NTF9 364 aa1.93□□□□□ -2.1
PTPRC-208ENST00000427110 IRGCQ6NXR0 463 aa1.93□□□□□ -2.1
PTPRC-208ENST00000427110 TATDN1Q6P1N9 297 aa1.93□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms