RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 EIF4G3O43432 1585 aaKnown RBP2.77□□□□□ -1.97
LINC01040-201ENST00000425048 ADGRB2O60241 1585 aa2.77□□□□□ -1.97
LINC01040-201ENST00000425048 HMGXB3Q12766 1538 aa2.77□□□□□ -1.97
LINC01040-201ENST00000425048 WNK3Q9BYP7 1800 aa2.77□□□□□ -1.97
LINC01040-201ENST00000425048 MED14O60244 1454 aa2.77□□□□□ -1.97
LINC01040-201ENST00000425048 PZPP20742 1482 aa2.77□□□□□ -1.97
LINC01040-201ENST00000425048 ABCC10Q5T3U5 1492 aa2.77□□□□□ -1.97
LINC01040-201ENST00000425048 N4BP2Q86UW6 1770 aaPredicted RBP2.77□□□□□ -1.97
LINC01040-201ENST00000425048 CROCC2H7BZ55 1655 aa2.76□□□□□ -1.97
LINC01040-201ENST00000425048 TARBP1Q13395 1621 aaKnown RBP2.76□□□□□ -1.97
LINC01040-201ENST00000425048 PASKQ96RG2 1323 aa2.76□□□□□ -1.97
LINC01040-201ENST00000425048 UGGT1Q9NYU2 1555 aa2.76□□□□□ -1.97
LINC01040-201ENST00000425048 BICDL2A1A5D9 508 aa2.76□□□□□ -1.97
LINC01040-201ENST00000425048 HTR3EA5X5Y0 456 aa2.76□□□□□ -1.97
LINC01040-201ENST00000425048 WDR46O15213 610 aaKnown RBP2.76□□□□□ -1.97
LINC01040-201ENST00000425048 P4HA2O15460 535 aa2.76□□□□□ -1.97
LINC01040-201ENST00000425048 TTI1O43156 1089 aa2.76□□□□□ -1.97
LINC01040-201ENST00000425048 SH3BP5O60239 455 aa2.76□□□□□ -1.97
LINC01040-201ENST00000425048 SMIM24O75264 130 aa2.76□□□□□ -1.97
LINC01040-201ENST00000425048 KIAA0754O94854 1291 aa2.76□□□□□ -1.97
LINC01040-201ENST00000425048 DUSP14O95147 198 aaKnown RBP2.76□□□□□ -1.97
LINC01040-201ENST00000425048 ANP32DO95626 131 aa2.76□□□□□ -1.97
LINC01040-201ENST00000425048 FGFR1OPO95684 399 aaKnown RBP2.76□□□□□ -1.97
LINC01040-201ENST00000425048 FHP07954 510 aa2.76□□□□□ -1.97
LINC01040-201ENST00000425048 FCGR3AP08637 254 aa2.76□□□□□ -1.97
LINC01040-201ENST00000425048 SPP1P10451 314 aa2.76□□□□□ -1.97
LINC01040-201ENST00000425048 TCF4P15884 667 aa2.76□□□□□ -1.97
LINC01040-201ENST00000425048 ARPC4P59998 168 aa2.76□□□□□ -1.97
LINC01040-201ENST00000425048 ELF3P78545 371 aaPredicted RBP2.76□□□□□ -1.97
LINC01040-201ENST00000425048 TLE4Q04727 773 aa2.76□□□□□ -1.97
LINC01040-201ENST00000425048 EBI3Q14213 229 aa2.76□□□□□ -1.97
LINC01040-201ENST00000425048 WDR43Q15061 677 aaKnown RBP eCLIP2.76□□□□□ -1.97
LINC01040-201ENST00000425048 ZNF658Q5TYW1 1059 aaPredicted RBP2.76□□□□□ -1.97
LINC01040-201ENST00000425048 ATL3Q6DD88 541 aa2.76□□□□□ -1.97
LINC01040-201ENST00000425048 OR52E8Q6IFG1 317 aa2.76□□□□□ -1.97
LINC01040-201ENST00000425048 C3orf62Q6ZUJ4 267 aa2.76□□□□□ -1.97
LINC01040-201ENST00000425048 LRRC43Q8N309 656 aa2.76□□□□□ -1.97
LINC01040-201ENST00000425048 NCOA7Q8NI08 942 aa2.76□□□□□ -1.97
LINC01040-201ENST00000425048 ZNF274Q96GC6 653 aaPredicted RBP2.76□□□□□ -1.97
LINC01040-201ENST00000425048 C16orf74Q96GX8 76 aa2.76□□□□□ -1.97
LINC01040-201ENST00000425048 SERINC2Q96SA4 455 aa2.76□□□□□ -1.97
LINC01040-201ENST00000425048 CCM2Q9BSQ5 444 aa2.76□□□□□ -1.97
LINC01040-201ENST00000425048 MTIF3Q9H2K0 278 aaKnown RBP2.76□□□□□ -1.97
LINC01040-201ENST00000425048 CENPHQ9H3R5 247 aa2.76□□□□□ -1.97
LINC01040-201ENST00000425048 DMAP1Q9NPF5 467 aaPredicted RBP2.76□□□□□ -1.97
LINC01040-201ENST00000425048 HOOK1Q9UJC3 728 aaKnown RBP2.76□□□□□ -1.97
LINC01040-201ENST00000425048 PAIP2BQ9ULR5 123 aaKnown RBP2.76□□□□□ -1.97
LINC01040-201ENST00000425048 HPCAL4Q9UM19 191 aa2.76□□□□□ -1.97
LINC01040-201ENST00000425048 USP16Q9Y5T5 823 aa2.76□□□□□ -1.97
LINC01040-201ENST00000425048 FGD5Q6ZNL6 1462 aa2.76□□□□□ -1.97
LINC01040-201ENST00000425048 RGS12O14924 1447 aa2.76□□□□□ -1.97
LINC01040-201ENST00000425048 NUP160Q12769 1436 aa2.76□□□□□ -1.97
LINC01040-201ENST00000425048 KDM5AP29375 1690 aaKnown RBP2.76□□□□□ -1.97
LINC01040-201ENST00000425048 IQGAP1P46940 1657 aa2.76□□□□□ -1.97
LINC01040-201ENST00000425048 NESP48681 1621 aa2.75□□□□□ -1.97
LINC01040-201ENST00000425048 KIF24Q5T7B8 1368 aa2.75□□□□□ -1.97
LINC01040-201ENST00000425048 PIK3R4Q99570 1358 aa2.75□□□□□ -1.97
LINC01040-201ENST00000425048 DNMBPQ6XZF7 1577 aa2.75□□□□□ -1.97
LINC01040-201ENST00000425048 PCM1Q15154 2024 aa2.75□□□□□ -1.97
LINC01040-201ENST00000425048 EFCAB6Q5THR3 1501 aa2.75□□□□□ -1.97
LINC01040-201ENST00000425048 LOC105371267A0A1B0GV96 52 aa2.75□□□□□ -1.97
LINC01040-201ENST00000425048 EFCAB7A8K855 629 aa2.75□□□□□ -1.97
LINC01040-201ENST00000425048 RNF212BA8MTL3 300 aa2.75□□□□□ -1.97
LINC01040-201ENST00000425048 BIRC5O15392 142 aa2.75□□□□□ -1.97
LINC01040-201ENST00000425048 LRP3O75074 770 aa2.75□□□□□ -1.97
LINC01040-201ENST00000425048 SUPT3HO75486 399 aa2.75□□□□□ -1.97
LINC01040-201ENST00000425048 LYNP07948 512 aa2.75□□□□□ -1.97
LINC01040-201ENST00000425048 SP9P0CG40 484 aa2.75□□□□□ -1.97
LINC01040-201ENST00000425048 SLC35E2P0CK97 266 aa2.75□□□□□ -1.97
LINC01040-201ENST00000425048 TROVE2P10155 538 aaKnown RBP eCLIP2.75□□□□□ -1.97
LINC01040-201ENST00000425048 MYBL1P10243 752 aa2.75□□□□□ -1.97
LINC01040-201ENST00000425048 GHRP10912 638 aa2.75□□□□□ -1.97
LINC01040-201ENST00000425048 SCG2P13521 617 aa2.75□□□□□ -1.97
LINC01040-201ENST00000425048 FOSL2P15408 326 aa2.75□□□□□ -1.97
LINC01040-201ENST00000425048 RPS2P15880 293 aaKnown RBP2.75□□□□□ -1.97
LINC01040-201ENST00000425048 HSPA4P34932 840 aa2.75□□□□□ -1.97
LINC01040-201ENST00000425048 GPC3P51654 580 aa2.75□□□□□ -1.97
LINC01040-201ENST00000425048 VSNL1P62760 191 aa2.75□□□□□ -1.97
LINC01040-201ENST00000425048 GNGT1P63211 74 aa2.75□□□□□ -1.97
LINC01040-201ENST00000425048 CEACAM7Q14002 265 aa2.75□□□□□ -1.97
LINC01040-201ENST00000425048 ANKRD55Q3KP44 614 aa2.75□□□□□ -1.97
LINC01040-201ENST00000425048 ANKRD20A8PQ5CZ79 823 aa2.75□□□□□ -1.97
LINC01040-201ENST00000425048 XKR4Q5GH76 650 aa2.75□□□□□ -1.97
LINC01040-201ENST00000425048 CFAP157Q5JU67 520 aa2.75□□□□□ -1.97
LINC01040-201ENST00000425048 CCDC121Q6ZUS5 278 aa2.75□□□□□ -1.97
LINC01040-201ENST00000425048 FAM219AQ8IW50 185 aa2.75□□□□□ -1.97
LINC01040-201ENST00000425048 TEX9Q8N6V9 391 aa2.75□□□□□ -1.97
LINC01040-201ENST00000425048 TMEM99Q8N816 258 aa2.75□□□□□ -1.97
LINC01040-201ENST00000425048 GDAP1Q8TB36 358 aa2.75□□□□□ -1.97
LINC01040-201ENST00000425048 KIFAP3Q92845 792 aa2.75□□□□□ -1.97
LINC01040-201ENST00000425048 CGREF1Q99674 301 aa2.75□□□□□ -1.97
LINC01040-201ENST00000425048 KATNB1Q9BVA0 655 aa2.75□□□□□ -1.97
LINC01040-201ENST00000425048 NAT10Q9H0A0 1025 aaKnown RBP2.75□□□□□ -1.97
LINC01040-201ENST00000425048 RSPH9Q9H1X1 276 aaPredicted RBP2.75□□□□□ -1.97
LINC01040-201ENST00000425048 VCX3BQ9H321 246 aa2.75□□□□□ -1.97
LINC01040-201ENST00000425048 DPEP3Q9H4B8 488 aa2.75□□□□□ -1.97
LINC01040-201ENST00000425048 CLSTN2Q9H4D0 955 aa2.75□□□□□ -1.97
LINC01040-201ENST00000425048 S100A14Q9HCY8 104 aa2.75□□□□□ -1.97
LINC01040-201ENST00000425048 COMMD8Q9NX08 183 aa2.75□□□□□ -1.97
LINC01040-201ENST00000425048 RHBDL2Q9NX52 303 aa2.75□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms