RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 ZNHIT3Q15649 155 aaPredicted RBP16.8■□□□□ 0.28
SDC1-203ENST00000403076 COX20Q5RI15 118 aa16.8■□□□□ 0.28
SDC1-203ENST00000403076 HLA-DQA1Q5Y7H0 255 aa16.8■□□□□ 0.28
SDC1-203ENST00000403076 MFSD12Q6NUT3 480 aa16.8■□□□□ 0.28
SDC1-203ENST00000403076 TNFAIP8L2Q6P589 184 aaPredicted RBP16.8■□□□□ 0.28
SDC1-203ENST00000403076 MRGPREQ86SM8 312 aa16.8■□□□□ 0.28
SDC1-203ENST00000403076 IFNEQ86WN2 208 aa16.8■□□□□ 0.28
SDC1-203ENST00000403076 KIF2BQ8N4N8 673 aa16.8■□□□□ 0.28
SDC1-203ENST00000403076 ZNF615Q8N8J6 731 aa16.8■□□□□ 0.28
SDC1-203ENST00000403076 NFAM1Q8NET5 270 aaPredicted RBP16.8■□□□□ 0.28
SDC1-203ENST00000403076 OR10A6Q8NH74 314 aa16.8■□□□□ 0.28
SDC1-203ENST00000403076 SLC9A6Q92581 669 aa16.8■□□□□ 0.28
SDC1-203ENST00000403076 VMP1Q96GC9 406 aa16.8■□□□□ 0.28
SDC1-203ENST00000403076 OR51I1Q9H343 314 aa16.8■□□□□ 0.28
SDC1-203ENST00000403076 FOLH1BQ9HBA9 442 aa16.8■□□□□ 0.28
SDC1-203ENST00000403076 ZNF160Q9HCG1 818 aa16.8■□□□□ 0.28
SDC1-203ENST00000403076 P4HTMQ9NXG6 502 aa16.8■□□□□ 0.28
SDC1-203ENST00000403076 PACSIN3Q9UKS6 424 aa16.8■□□□□ 0.28
SDC1-203ENST00000403076 HEMK1Q9Y5R4 338 aaPredicted RBP16.8■□□□□ 0.28
SDC1-203ENST00000403076 GIMAP1-GIMAP5A0A087WTJ2 511 aa16.8■□□□□ 0.28
SDC1-203ENST00000403076 NME4O00746 187 aa16.8■□□□□ 0.28
SDC1-203ENST00000403076 GSC2O15499 205 aa16.8■□□□□ 0.28
SDC1-203ENST00000403076 KLK10O43240 276 aa16.8■□□□□ 0.28
SDC1-203ENST00000403076 IGKV3-11P04433 115 aa16.8■□□□□ 0.28
SDC1-203ENST00000403076 ETFAP13804 333 aa16.8■□□□□ 0.28
SDC1-203ENST00000403076 GPX2P18283 190 aa16.8■□□□□ 0.28
SDC1-203ENST00000403076 EMDP50402 254 aa16.8■□□□□ 0.28
SDC1-203ENST00000403076 SLC37A1P57057 533 aa16.8■□□□□ 0.28
SDC1-203ENST00000403076 FADDQ13158 208 aa16.8■□□□□ 0.28
SDC1-203ENST00000403076 DUSP8Q13202 625 aa16.8■□□□□ 0.28
SDC1-203ENST00000403076 SRSF6Q13247 344 aaKnown RBP16.8■□□□□ 0.28
SDC1-203ENST00000403076 ATP1A4Q13733 1029 aa16.8■□□□□ 0.28
SDC1-203ENST00000403076 EXT1Q16394 746 aa16.8■□□□□ 0.28
SDC1-203ENST00000403076 CYP51A1Q16850 503 aa16.8■□□□□ 0.28
SDC1-203ENST00000403076 SLC29A4Q7RTT9 530 aa16.8■□□□□ 0.28
SDC1-203ENST00000403076 WDR53Q7Z5U6 358 aaPredicted RBP16.8■□□□□ 0.28
SDC1-203ENST00000403076 RNF148Q8N7C7 305 aa16.8■□□□□ 0.28
SDC1-203ENST00000403076 C16orf52Q8NHV5 167 aa16.8■□□□□ 0.28
SDC1-203ENST00000403076 ADAMTS15Q8TE58 950 aa16.8■□□□□ 0.28
SDC1-203ENST00000403076 GIMAP5Q96F15 307 aa16.8■□□□□ 0.28
SDC1-203ENST00000403076 CADM1Q9BY67 442 aaKnown RBP16.8■□□□□ 0.28
SDC1-203ENST00000403076 KAT8Q9H7Z6 458 aaKnown RBP16.8■□□□□ 0.28
SDC1-203ENST00000403076 TMEM181Q9P2C4 612 aa16.8■□□□□ 0.28
SDC1-203ENST00000403076 FBXL4Q9UKA2 621 aa16.8■□□□□ 0.28
SDC1-203ENST00000403076 PRPF19Q9UMS4 504 aaKnown RBP16.8■□□□□ 0.28
SDC1-203ENST00000403076 GMEB1Q9Y692 573 aa16.8■□□□□ 0.28
SDC1-203ENST00000403076 HPP00738 406 aa16.79■□□□□ 0.28
SDC1-203ENST00000403076 ALOX5P09917 674 aa16.79■□□□□ 0.28
SDC1-203ENST00000403076 OR12D1P0DN82 309 aa16.79■□□□□ 0.28
SDC1-203ENST00000403076 CLCN2P51788 898 aa16.79■□□□□ 0.28
SDC1-203ENST00000403076 GPR143P51810 404 aa16.79■□□□□ 0.28
SDC1-203ENST00000403076 EEFSECP57772 596 aaKnown RBP16.79■□□□□ 0.28
SDC1-203ENST00000403076 LIPEQ05469 1076 aa16.79■□□□□ 0.28
SDC1-203ENST00000403076 SAMD4BQ5PRF9 694 aaKnown RBP16.79■□□□□ 0.28
SDC1-203ENST00000403076 ZCCHC12Q6PEW1 402 aa16.79■□□□□ 0.28
SDC1-203ENST00000403076 HSDL2Q6YN16 418 aa16.79■□□□□ 0.28
SDC1-203ENST00000403076 HORMAD2Q8N7B1 307 aa16.79■□□□□ 0.28
SDC1-203ENST00000403076 AMER2Q8N7J2 671 aa16.79■□□□□ 0.28
SDC1-203ENST00000403076 CDRT4Q8N9R6 151 aa16.79■□□□□ 0.28
SDC1-203ENST00000403076 SNIP1Q8TAD8 396 aaKnown RBP16.79■□□□□ 0.28
SDC1-203ENST00000403076 XAGE5Q8WWM1 108 aa16.79■□□□□ 0.28
SDC1-203ENST00000403076 RAB8BQ92930 207 aa16.79■□□□□ 0.28
SDC1-203ENST00000403076 OTUB1Q96FW1 271 aaPredicted RBP16.79■□□□□ 0.28
SDC1-203ENST00000403076 IMMP1LQ96LU5 166 aa16.79■□□□□ 0.28
SDC1-203ENST00000403076 GAL3ST4Q96RP7 486 aa16.79■□□□□ 0.28
SDC1-203ENST00000403076 DPH1Q9BZG8 443 aa16.79■□□□□ 0.28
SDC1-203ENST00000403076 ABCD2Q9UBJ2 740 aa16.79■□□□□ 0.28
SDC1-203ENST00000403076 WDFY3Q8IZQ1 3526 aa16.78■□□□□ 0.28
SDC1-203ENST00000403076 TRBV11-1A0A0K0K1C0 115 aa16.78■□□□□ 0.28
SDC1-203ENST00000403076 C2orf92A0A1B0GVN3 265 aa16.78■□□□□ 0.28
SDC1-203ENST00000403076 A0A1W2PQ72 361 aa16.78■□□□□ 0.28
SDC1-203ENST00000403076 DUXAA6NLW8 204 aa16.78■□□□□ 0.28
SDC1-203ENST00000403076 OR6C76A6NM76 312 aa16.78■□□□□ 0.28
SDC1-203ENST00000403076 PSMG1O95456 288 aa16.78■□□□□ 0.28
SDC1-203ENST00000403076 CLPSP04118 112 aa16.78■□□□□ 0.28
SDC1-203ENST00000403076 PRKAR1AP10644 381 aa16.78■□□□□ 0.28
SDC1-203ENST00000403076 ICAM2P13598 275 aa16.78■□□□□ 0.28
SDC1-203ENST00000403076 MAGEA8P43361 318 aa16.78■□□□□ 0.28
SDC1-203ENST00000403076 MVDP53602 400 aa16.78■□□□□ 0.28
SDC1-203ENST00000403076 DSTNP60981 165 aa16.78■□□□□ 0.28
SDC1-203ENST00000403076 TXNL4AP83876 142 aaKnown RBP16.78■□□□□ 0.28
SDC1-203ENST00000403076 CDC73Q6P1J9 531 aa16.78■□□□□ 0.28
SDC1-203ENST00000403076 ARHGAP24Q8N264 748 aa16.78■□□□□ 0.28
SDC1-203ENST00000403076 SLC16A11Q8NCK7 471 aa16.78■□□□□ 0.28
SDC1-203ENST00000403076 APCDD1LQ8NCL9 501 aa16.78■□□□□ 0.28
SDC1-203ENST00000403076 OR5D16Q8NGK9 328 aa16.78■□□□□ 0.28
SDC1-203ENST00000403076 M1APQ8TC57 530 aa16.78■□□□□ 0.28
SDC1-203ENST00000403076 GPR151Q8TDV0 419 aa16.78■□□□□ 0.28
SDC1-203ENST00000403076 ADAMTS17Q8TE56 1095 aa16.78■□□□□ 0.28
SDC1-203ENST00000403076 OR7D2Q96RA2 312 aa16.78■□□□□ 0.28
SDC1-203ENST00000403076 KCTD14Q9BQ13 255 aaPredicted RBP16.78■□□□□ 0.28
SDC1-203ENST00000403076 DEFB126Q9BYW3 111 aa16.78■□□□□ 0.28
SDC1-203ENST00000403076 SEMA4CQ9C0C4 833 aa16.78■□□□□ 0.28
SDC1-203ENST00000403076 SERHL2Q9H4I8 314 aa16.78■□□□□ 0.28
SDC1-203ENST00000403076 PPIEQ9UNP9 301 aaKnown RBP16.78■□□□□ 0.28
SDC1-203ENST00000403076 TMEM247A6NEH6 219 aa16.77■□□□□ 0.28
SDC1-203ENST00000403076 TCN1P20061 433 aaPredicted RBP16.77■□□□□ 0.28
SDC1-203ENST00000403076 GABRA3P34903 492 aa16.77■□□□□ 0.28
SDC1-203ENST00000403076 SOX11P35716 441 aa16.77■□□□□ 0.28
SDC1-203ENST00000403076 GSK3BP49841 420 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms