RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 CPNE1Q99829 537 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 ANKRD19PQ9H560 264 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 RPS10P5Q9NQ39 176 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 FNIP2Q9P278 1114 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 TMEM181Q9P2C4 612 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 ANKMY1Q9P2S6 941 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 MAN2B2Q9Y2E5 1009 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 PTPRZ1P23471 2315 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-202ENST00000375405 ZNF816-ZNF321PA0A0X1KG74 233 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 SMIM30A4D0T7 59 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 NKX6-3A6NJ46 265 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 F5H5K5 113 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 MANBAO00462 879 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 SIAH2O43255 324 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 AOC2O75106 756 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 CFHP08603 1231 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 CD48P09326 243 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 SRGNP10124 158 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 MAPK3P27361 379 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-202ENST00000375405 ETV1P50549 477 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 SIRPAP78324 504 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 ID2Q02363 134 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 TGFBR3Q03167 851 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 CTBP1Q13363 440 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 MEP1AQ16819 746 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 ZNF484Q5JVG2 852 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 NANOGP8Q6NSW7 305 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 TMEM220Q6QAJ8 160 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 ZNF813Q6ZN06 617 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 LHFPL3Q86UP9 236 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 CILP2Q8IUL8 1156 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 SYN2Q92777 582 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-202ENST00000375405 HRASLS5Q96KN8 279 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 PTDSS2Q9BVG9 487 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 ZDHHC5Q9C0B5 715 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 ADARB2Q9NS39 739 aaKnown RBP4.44□□□□□ -1.7
SCN1A-202ENST00000375405 BARHL2Q9NY43 387 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 TAS2R14Q9NYV8 317 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 ING1Q9UK53 422 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-202ENST00000375405 BOLA1Q9Y3E2 137 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 AGPAT2O15120 278 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 COQ9O75208 318 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 SC5DO75845 299 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 CDS2O95674 445 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 IFNW1P05000 195 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 INHAP05111 366 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 TAL1P17542 331 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-202ENST00000375405 GGT1P19440 569 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 IL2RGP31785 369 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 TAS2R20P59543 309 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 SEC61A1P61619 476 aaKnown RBP4.44□□□□□ -1.7
SCN1A-202ENST00000375405 C14orf28Q4W4Y0 310 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 VASH2Q86V25 355 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 SLC22A16Q86VW1 577 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 CCDC71LQ8N9Z2 235 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 FAM83FQ8NEG4 500 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-202ENST00000375405 IMP4Q96G21 291 aaKnown RBP4.44□□□□□ -1.7
SCN1A-202ENST00000375405 AMDHD1Q96NU7 426 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 PKP2Q99959 881 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 LMF2Q9BU23 707 aaKnown RBP4.44□□□□□ -1.7
SCN1A-202ENST00000375405 TPT1P8Q9HAU6 139 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 CDH22Q9UJ99 828 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 POLHQ9Y253 713 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 KIF1BO60333 1816 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 ABCA5Q8WWZ7 1642 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 IGKV3OR2-268A0A0C4DH90 116 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-202ENST00000375405 F6UZH7 168 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 SYNGR2O43760 224 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 MRPL3P09001 348 aaKnown RBP4.44□□□□□ -1.7
SCN1A-202ENST00000375405 USF1P22415 310 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-202ENST00000375405 KDELR2P33947 212 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 BMP8BP34820 402 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 SRSF9Q13242 221 aaKnown RBP eCLIP4.44□□□□□ -1.7
SCN1A-202ENST00000375405 KIAA1211LQ6NV74 962 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 BMP8AQ7Z5Y6 402 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 MMAAQ8IVH4 418 aaKnown RBP4.44□□□□□ -1.7
SCN1A-202ENST00000375405 C19orf47Q8N9M1 422 aaKnown RBP4.44□□□□□ -1.7
SCN1A-202ENST00000375405 SPTSSAQ969W0 71 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 TMEM176AQ96HP8 235 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 NTPCRQ9BSD7 190 aaKnown RBP4.44□□□□□ -1.7
SCN1A-202ENST00000375405 BTBD1Q9H0C5 482 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 RAI2Q9Y5P3 530 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 ABCC10Q5T3U5 1492 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 TRIM77I1YAP6 450 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 BANF1O75531 89 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 HOXB7P09629 217 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 IGFBP5P24593 272 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 ERP29P30040 261 aaKnown RBP4.44□□□□□ -1.7
SCN1A-202ENST00000375405 OR4D2P58180 307 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 UBE2IP63279 158 aaKnown RBP4.44□□□□□ -1.7
SCN1A-202ENST00000375405 DLG4P78352 724 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 MRPS34P82930 218 aaKnown RBP4.44□□□□□ -1.7
SCN1A-202ENST00000375405 DBPQ10586 325 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-202ENST00000375405 DPYSL3Q14195 570 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 NNATQ16517 81 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 ALKBH6Q3KRA9 238 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 CTSL3PQ5NE16 218 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 CCNJLQ8IV13 435 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 CPXM2Q8N436 756 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms