RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 VNN3Q9NY84 501 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 KCMF1Q9P0J7 381 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 TRPC4Q9UBN4 977 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 ATG4BQ9Y4P1 393 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 COL4A2P08572 1712 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 OR5K3A6NET4 321 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 ANTXRLA6NF34 631 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 BTN3A3O00478 584 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 CLDN4O14493 209 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 OR10H3O60404 316 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 WBP4O75554 376 aaKnown RBP8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 STX11O75558 287 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 ERAL1O75616 437 aaKnown RBP8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 B3GALT4O96024 378 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 HMGN1P05114 100 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 SLC35E2P0CK97 266 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 OR12D1P0DN82 309 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 CDK4P11802 303 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 CPMP14384 443 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 GABRB1P18505 474 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 ENDOUP21128 410 aaKnown RBP8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 CHMP24386 653 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 ELAVL4P26378 380 aaKnown RBP8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 PEBP1P30086 187 aaKnown RBP8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 XKP51811 444 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 LIM2P55344 173 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 RACK1P63244 317 aaKnown RBP8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 BTN3A2P78410 334 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 IL1RL1Q01638 556 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 MAP4K2Q12851 820 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 C1DQ13901 141 aaKnown RBP8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 GPR18Q14330 331 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 ZNF846Q147U1 533 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 SEC23BQ15437 767 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 ZNHIT3Q15649 155 aaPredicted RBP8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 DECR1Q16698 335 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 ZNF311Q5JNZ3 666 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 EXOSC6Q5RKV6 272 aaKnown RBP8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 YOD1Q5VVQ6 348 aaPredicted RBP8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 LAIR2Q6ISS4 152 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 DUS1LQ6P1R4 473 aaKnown RBP8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 TNFAIP8L2Q6P589 184 aaPredicted RBP8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 PTCHD4Q6ZW05 846 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 CMIPQ8IY22 773 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 ZNF595Q8IYB9 648 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 CCDC116Q8IYX3 515 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 HS3ST5Q8IZT8 346 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 C2orf73Q8N5S3 287 aaPredicted RBP8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 AQP11Q8NBQ7 271 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 PROKR2Q8NFJ6 384 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 KBTBD8Q8NFY9 601 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 OR9Q1Q8NGQ5 310 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 FAM81AQ8TBF8 368 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 GAB3Q8WWW8 586 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 KLHL6Q8WZ60 621 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 HOXB13Q92826 284 aaPredicted RBP8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 KLK6Q92876 244 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 YIPF6Q96EC8 236 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 MVB12AQ96EY5 273 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 C10orf90Q96M02 699 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 SLC38A2Q96QD8 506 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 COQ7Q99807 217 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 FUZQ9BT04 418 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 TMEM168Q9H0V1 697 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 MMP27Q9H306 513 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 XKR8Q9H6D3 395 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 PAK1IP1Q9NWT1 392 aaPredicted RBP8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 HRASLS2Q9NWW9 162 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 SPHK1Q9NYA1 384 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 APOBEC3BQ9UH17 382 aaKnown RBP8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 POMT2Q9UKY4 750 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 DUSP12Q9UNI6 340 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 RNF6Q9Y252 685 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 ERGIC3Q9Y282 383 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 TMEM5Q9Y2B1 443 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 KLHL20Q9Y2M5 609 aa8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 PRRC2BQ5JSZ5 2229 aaKnown RBP8.19□□□□□ -1.1
SNRNP40-202ENST00000373720 PNMA8CA0A1B0GUJ8 204 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 OR6C74A6NCV1 312 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 PRR23AA6NEV1 266 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 SAGE2PA6NJ88 616 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 H0YIG0 161 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 GALR3O60755 368 aaPredicted RBP8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 CBFA2T3O75081 653 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 BCAS1O75363 584 aaPredicted RBP8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 NME6O75414 186 aaPredicted RBP8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 IGF2P01344 180 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 GASTP01350 101 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 CSF2P04141 144 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 IGHV4-34P06331 123 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 HTR1AP08908 422 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 ALOX5P09917 674 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 CCNYL3P0C7X3 344 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 MSL3P1P0C860 447 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 THEGLP0DJG4 465 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 GAAP10253 952 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 IL7RP16871 459 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 NELFEP18615 380 aaKnown RBP8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 GALP22466 123 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms