RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 CTHRC1Q96CG8 243 aa12.56□□□□□ -0.4
VPS29-201ENST00000360579 MTERF1Q99551 399 aaKnown RBP12.56□□□□□ -0.4
VPS29-201ENST00000360579 G6PC3Q9BUM1 346 aa12.56□□□□□ -0.4
VPS29-201ENST00000360579 CXorf56Q9H5V9 222 aa12.56□□□□□ -0.4
VPS29-201ENST00000360579 SERHLQ9NQF3 203 aa12.56□□□□□ -0.4
VPS29-201ENST00000360579 TAS2R10Q9NYW0 307 aa12.56□□□□□ -0.4
VPS29-201ENST00000360579 NUDT4Q9NZJ9 180 aa12.56□□□□□ -0.4
VPS29-201ENST00000360579 TXNDC16Q9P2K2 825 aa12.56□□□□□ -0.4
VPS29-201ENST00000360579 MAPRE3Q9UPY8 281 aa12.56□□□□□ -0.4
VPS29-201ENST00000360579 WASHC1A8K0Z3 465 aa12.55□□□□□ -0.4
VPS29-201ENST00000360579 PHGDHO43175 533 aaKnown RBP12.55□□□□□ -0.4
VPS29-201ENST00000360579 HCRTR2O43614 444 aa12.55□□□□□ -0.4
VPS29-201ENST00000360579 TMPRSS11DO60235 418 aa12.55□□□□□ -0.4
VPS29-201ENST00000360579 EEDO75530 441 aaKnown RBP12.55□□□□□ -0.4
VPS29-201ENST00000360579 POU2F1P14859 743 aa12.55□□□□□ -0.4
VPS29-201ENST00000360579 GPX3P22352 226 aa12.55□□□□□ -0.4
VPS29-201ENST00000360579 IVDP26440 423 aa12.55□□□□□ -0.4
VPS29-201ENST00000360579 BSGP35613 385 aa12.55□□□□□ -0.4
VPS29-201ENST00000360579 UGT2B10P36537 528 aa12.55□□□□□ -0.4
VPS29-201ENST00000360579 LHX2P50458 406 aa12.55□□□□□ -0.4
VPS29-201ENST00000360579 FGFBP1Q14512 234 aa12.55□□□□□ -0.4
VPS29-201ENST00000360579 LIPJQ5W064 366 aa12.55□□□□□ -0.4
VPS29-201ENST00000360579 CHMP1BQ7LBR1 199 aa12.55□□□□□ -0.4
VPS29-201ENST00000360579 MYLK4Q86YV6 388 aaPredicted RBP12.55□□□□□ -0.4
VPS29-201ENST00000360579 MEIOBQ8N635 442 aa12.55□□□□□ -0.4
VPS29-201ENST00000360579 CNEP1R1Q8N9A8 125 aa12.55□□□□□ -0.4
VPS29-201ENST00000360579 FBXO36Q8NEA4 188 aa12.55□□□□□ -0.4
VPS29-201ENST00000360579 OR4K14Q8NGD5 310 aa12.55□□□□□ -0.4
VPS29-201ENST00000360579 UBTD2Q8WUN7 234 aa12.55□□□□□ -0.4
VPS29-201ENST00000360579 TMEM171Q8WVE6 324 aa12.55□□□□□ -0.4
VPS29-201ENST00000360579 EXT2Q93063 718 aa12.55□□□□□ -0.4
VPS29-201ENST00000360579 HGDQ93099 445 aa12.55□□□□□ -0.4
VPS29-201ENST00000360579 CAVIN3Q969G5 261 aa12.55□□□□□ -0.4
VPS29-201ENST00000360579 STARD4Q96DR4 205 aa12.55□□□□□ -0.4
VPS29-201ENST00000360579 UBXN10Q96LJ8 280 aa12.55□□□□□ -0.4
VPS29-201ENST00000360579 ZNF717Q9BY31 904 aaPredicted RBP12.55□□□□□ -0.4
VPS29-201ENST00000360579 DDX47Q9H0S4 455 aaKnown RBP12.55□□□□□ -0.4
VPS29-201ENST00000360579 NXF5Q9H1B4 397 aaKnown RBP12.55□□□□□ -0.4
VPS29-201ENST00000360579 CAB39LQ9H9S4 337 aa12.55□□□□□ -0.4
VPS29-201ENST00000360579 PSD3Q9NYI0 1048 aa12.55□□□□□ -0.4
VPS29-201ENST00000360579 MTO1Q9Y2Z2 717 aaKnown RBP12.55□□□□□ -0.4
VPS29-201ENST00000360579 PRAMEF25A6NGN4 478 aa12.54□□□□□ -0.4
VPS29-201ENST00000360579 RNF212BA8MTL3 300 aa12.54□□□□□ -0.4
VPS29-201ENST00000360579 H0YIV9 168 aa12.54□□□□□ -0.4
VPS29-201ENST00000360579 C16orf97H3BN30 126 aa12.54□□□□□ -0.4
VPS29-201ENST00000360579 TGM6O95932 706 aa12.54□□□□□ -0.4
VPS29-201ENST00000360579 IFNA2P01563 188 aa12.54□□□□□ -0.4
VPS29-201ENST00000360579 CT62P0C5K7 136 aa12.54□□□□□ -0.4
VPS29-201ENST00000360579 ZNF708P17019 499 aa12.54□□□□□ -0.4
VPS29-201ENST00000360579 NT5EP21589 574 aa12.54□□□□□ -0.4
VPS29-201ENST00000360579 SRD5A2P31213 254 aa12.54□□□□□ -0.4
VPS29-201ENST00000360579 KCNJ5P48544 419 aa12.54□□□□□ -0.4
VPS29-201ENST00000360579 PLCXD2Q0VAA5 305 aa12.54□□□□□ -0.4
VPS29-201ENST00000360579 PDIA2Q13087 525 aaKnown RBP12.54□□□□□ -0.4
VPS29-201ENST00000360579 BCL2A1Q16548 175 aa12.54□□□□□ -0.4
VPS29-201ENST00000360579 PLCZ1Q86YW0 608 aa12.54□□□□□ -0.4
VPS29-201ENST00000360579 RNF175Q8N4F7 328 aa12.54□□□□□ -0.4
VPS29-201ENST00000360579 GBP7Q8N8V2 638 aaPredicted RBP12.54□□□□□ -0.4
VPS29-201ENST00000360579 WDSUB1Q8N9V3 476 aa12.54□□□□□ -0.4
VPS29-201ENST00000360579 RDH11Q8TC12 318 aa12.54□□□□□ -0.4
VPS29-201ENST00000360579 CDKL2Q92772 493 aa12.54□□□□□ -0.4
VPS29-201ENST00000360579 OMA1Q96E52 524 aa12.54□□□□□ -0.4
VPS29-201ENST00000360579 PGM2Q96G03 612 aa12.54□□□□□ -0.4
VPS29-201ENST00000360579 LCORQ96JN0 433 aaPredicted RBP12.54□□□□□ -0.4
VPS29-201ENST00000360579 SFXN2Q96NB2 322 aa12.54□□□□□ -0.4
VPS29-201ENST00000360579 NODALQ96S42 347 aa12.54□□□□□ -0.4
VPS29-201ENST00000360579 OSBPL9Q96SU4 736 aa12.54□□□□□ -0.4
VPS29-201ENST00000360579 GALNT9Q9HCQ5 603 aa12.54□□□□□ -0.4
VPS29-201ENST00000360579 MRPS18CQ9Y3D5 142 aaKnown RBP12.54□□□□□ -0.4
VPS29-201ENST00000360579 ANGPTL3Q9Y5C1 460 aa12.54□□□□□ -0.4
VPS29-201ENST00000360579 NBEAL1Q6ZS30 2694 aa12.54□□□□□ -0.4
VPS29-201ENST00000360579 SLC22A20A6NK97 555 aa12.53□□□□□ -0.4
VPS29-201ENST00000360579 SUPT3HB4E1H0 165 aa12.53□□□□□ -0.4
VPS29-201ENST00000360579 PGRMC2O15173 223 aa12.53□□□□□ -0.4
VPS29-201ENST00000360579 UGDHO60701 494 aa12.53□□□□□ -0.4
VPS29-201ENST00000360579 SUPT3HO75486 399 aa12.53□□□□□ -0.4
VPS29-201ENST00000360579 CPMP14384 443 aa12.53□□□□□ -0.4
VPS29-201ENST00000360579 PTGDSP41222 190 aa12.53□□□□□ -0.4
VPS29-201ENST00000360579 STARP49675 285 aa12.53□□□□□ -0.4
VPS29-201ENST00000360579 XKP51811 444 aa12.53□□□□□ -0.4
VPS29-201ENST00000360579 CLDN18P56856 261 aa12.53□□□□□ -0.4
VPS29-201ENST00000360579 RAB10P61026 200 aa12.53□□□□□ -0.4
VPS29-201ENST00000360579 DMTNQ08495 405 aa12.53□□□□□ -0.4
VPS29-201ENST00000360579 ZKSCAN8Q15776 578 aaPredicted RBP12.53□□□□□ -0.4
VPS29-201ENST00000360579 HEPHL1Q6MZM0 1159 aa12.53□□□□□ -0.4
VPS29-201ENST00000360579 PODNL1Q6PEZ8 512 aa12.53□□□□□ -0.4
VPS29-201ENST00000360579 ZNF474Q6S9Z5 364 aaPredicted RBP12.53□□□□□ -0.4
VPS29-201ENST00000360579 PLXDC2Q6UX71 529 aa12.53□□□□□ -0.4
VPS29-201ENST00000360579 TMCO6Q96DC7 493 aa12.53□□□□□ -0.4
VPS29-201ENST00000360579 MARK4Q96L34 752 aa12.53□□□□□ -0.4
VPS29-201ENST00000360579 GPR22Q99680 433 aa12.53□□□□□ -0.4
VPS29-201ENST00000360579 ALG9Q9H6U8 611 aa12.53□□□□□ -0.4
VPS29-201ENST00000360579 NMRAL1Q9HBL8 299 aa12.53□□□□□ -0.4
VPS29-201ENST00000360579 ZNF701Q9NV72 531 aaPredicted RBP12.53□□□□□ -0.4
VPS29-201ENST00000360579 PPP2R2CQ9Y2T4 447 aa12.53□□□□□ -0.4
VPS29-201ENST00000360579 GOLGA6L10A6NI86 522 aa12.52□□□□□ -0.41
VPS29-201ENST00000360579 FOXE1O00358 373 aaPredicted RBP12.52□□□□□ -0.41
VPS29-201ENST00000360579 EMC8O43402 210 aa12.52□□□□□ -0.41
VPS29-201ENST00000360579 KERAO60938 352 aa12.52□□□□□ -0.41
VPS29-201ENST00000360579 UGT2B11O75310 529 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms