RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 M1APQ8TC57 530 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 GCDHQ92947 438 aaPredicted RBP3.95□□□□□ -1.78
NEDD4-201ENST00000338963 ACOX2Q99424 681 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 C19orf43Q9BQ61 176 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 PCED1AQ9H1Q7 454 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 ST6GALNAC4Q9H4F1 302 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 KIR3DX1Q9H7L2 352 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 UPB1Q9UBR1 384 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 EXOSC1Q9Y3B2 195 aaKnown RBP3.95□□□□□ -1.78
NEDD4-201ENST00000338963 MMP24Q9Y5R2 645 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 SPEF2Q9C093 1822 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 J3KRW8 73 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 AZIN1O14977 448 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 BCAT2O15382 392 aaPredicted RBP3.95□□□□□ -1.78
NEDD4-201ENST00000338963 CREBL2O60519 120 aaPredicted RBP3.95□□□□□ -1.78
NEDD4-201ENST00000338963 CTNSO60931 367 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 GCGP01275 180 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 ALDOCP09972 364 aaKnown RBP3.95□□□□□ -1.78
NEDD4-201ENST00000338963 CCNOP22674 350 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 LTKP29376 864 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 PXNP49023 591 aaPredicted RBP3.95□□□□□ -1.78
NEDD4-201ENST00000338963 CRYZQ08257 329 aaKnown RBP3.95□□□□□ -1.78
NEDD4-201ENST00000338963 HNRNPA0Q13151 305 aaKnown RBP3.95□□□□□ -1.78
NEDD4-201ENST00000338963 HABP2Q14520 560 aaPredicted RBP3.95□□□□□ -1.78
NEDD4-201ENST00000338963 ZNF628Q5EBL2 1059 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 PRAMEF19Q5SWL8 479 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 ETFRF1Q6IPR1 90 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 GRHL2Q6ISB3 625 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 TMEM179Q6ZVK1 233 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 CDK20Q8IZL9 346 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 UBAC2Q8NBM4 344 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 PROKR2Q8NFJ6 384 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 CCDC107Q8WV48 283 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 EDARADDQ8WWZ3 215 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 OIT3Q8WWZ8 545 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 RNFT2Q96EX2 444 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 ZNF385AQ96PM9 386 aaKnown RBP3.95□□□□□ -1.78
NEDD4-201ENST00000338963 WDR83Q9BRX9 315 aaKnown RBP3.95□□□□□ -1.78
NEDD4-201ENST00000338963 NXF3Q9H4D5 531 aaKnown RBP3.95□□□□□ -1.78
NEDD4-201ENST00000338963 POMKQ9H5K3 350 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 NSUN3Q9H649 340 aaKnown RBP3.95□□□□□ -1.78
NEDD4-201ENST00000338963 LOC102723532A0A0G2JNH3 316 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 LRIT2A6NDA9 550 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 LRRC14BA6NHZ5 514 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 RNF212BA8MTL3 300 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 CXorf49A8MYA2 514 aaPredicted RBP3.95□□□□□ -1.78
NEDD4-201ENST00000338963 M0R082 166 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 ALDOBP05062 364 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 RAB5AP20339 215 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 BDKRB2P30411 391 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 TAF6P49848 677 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 POLR2JP52435 117 aaKnown RBP3.95□□□□□ -1.78
NEDD4-201ENST00000338963 SEC13P55735 322 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 KLF3P57682 345 aaPredicted RBP3.95□□□□□ -1.78
NEDD4-201ENST00000338963 SP3Q02447 781 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 ELAVL2Q12926 359 aaKnown RBP3.95□□□□□ -1.78
NEDD4-201ENST00000338963 CBWD3Q5JTY5 395 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 CBWD5Q5RIA9 395 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 KIAA0319Q5VV43 1072 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 KCTD1Q719H9 257 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 NPAS3Q8IXF0 933 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 OR8J2Q8NGG1 315 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 EPYCQ99645 322 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 AMNQ9BXJ7 453 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 GPR62Q9BZJ7 368 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 MFFQ9GZY8 342 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 OR2AG1Q9H205 316 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 GRHPRQ9UBQ7 328 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 SLC35A3Q9Y2D2 325 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 ALKQ9UM73 1620 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 TBC1D3DA0A087WVF3 549 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 TBC1D3IA0A087WXS9 549 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 TBC1D3EA0A087X179 549 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 WDR27A2RRH5 827 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 TBC1D3FA6NER0 549 aaPredicted RBP3.95□□□□□ -1.78
NEDD4-201ENST00000338963 TBC1D3LB9A6J9 549 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 TGFB1I1O43294 461 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 PIAS2O75928 621 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 HAPLN1P10915 354 aaPredicted RBP3.95□□□□□ -1.78
NEDD4-201ENST00000338963 ITPKAP23677 461 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 GIPRP48546 466 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 GSK3AP49840 483 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 OR2B8PP59922 312 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 CACNB2Q08289 660 aaPredicted RBP3.95□□□□□ -1.78
NEDD4-201ENST00000338963 ST3GAL4Q11206 333 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 TMEM115Q12893 351 aaPredicted RBP3.95□□□□□ -1.78
NEDD4-201ENST00000338963 ZNF345Q14585 488 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 GRM3Q14832 879 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 KCNA10Q16322 511 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 GUK1Q16774 197 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 ZRANB3Q5FWF4 1079 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 FRMPD2BQ6IN97 320 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 TBC1D3CQ6IPX1 549 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 SLC39A4Q6P5W5 647 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 CNIH2Q6PI25 160 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 PARGQ86W56 976 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 TBC1D3Q8IZP1 549 aaPredicted RBP3.95□□□□□ -1.78
NEDD4-201ENST00000338963 OR10J5Q8NHC4 309 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 FIBINQ8TAL6 211 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 LMO3Q8TAP4 145 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms