RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 FOXF2Q12947 444 aa13.44□□□□□ -0.26
CCDC88B-201ENST00000301897 NAB1Q13506 487 aa13.44□□□□□ -0.26
CCDC88B-201ENST00000301897 CPSF6Q16630 551 aaKnown RBP eCLIP13.44□□□□□ -0.26
CCDC88B-201ENST00000301897 KBTBD12Q3ZCT8 623 aa13.44□□□□□ -0.26
CCDC88B-201ENST00000301897 AAGABQ6PD74 315 aa13.44□□□□□ -0.26
CCDC88B-201ENST00000301897 C3orf62Q6ZUJ4 267 aa13.44□□□□□ -0.26
CCDC88B-201ENST00000301897 IFNEQ86WN2 208 aa13.44□□□□□ -0.26
CCDC88B-201ENST00000301897 PRR22Q8IZ63 422 aa13.44□□□□□ -0.26
CCDC88B-201ENST00000301897 VWA5B2Q8N398 1253 aa13.44□□□□□ -0.26
CCDC88B-201ENST00000301897 L3MBTL4Q8NA19 623 aa13.44□□□□□ -0.26
CCDC88B-201ENST00000301897 OR14L1PQ8NHC6 308 aa13.44□□□□□ -0.26
CCDC88B-201ENST00000301897 INTS12Q96CB8 462 aaKnown RBP13.44□□□□□ -0.26
CCDC88B-201ENST00000301897 NXF5Q9H1B4 397 aaKnown RBP13.44□□□□□ -0.26
CCDC88B-201ENST00000301897 ZNF226Q9NYT6 803 aa13.44□□□□□ -0.26
CCDC88B-201ENST00000301897 AHSPQ9NZD4 102 aa13.44□□□□□ -0.26
CCDC88B-201ENST00000301897 KLRF1Q9NZS2 232 aa13.44□□□□□ -0.26
CCDC88B-201ENST00000301897 ACOT9Q9Y305 439 aa13.44□□□□□ -0.26
CCDC88B-201ENST00000301897 SNX24Q9Y343 169 aa13.44□□□□□ -0.26
CCDC88B-201ENST00000301897 TESMINQ9Y4I5 508 aa13.44□□□□□ -0.26
CCDC88B-201ENST00000301897 ROS1P08922 2347 aa13.44□□□□□ -0.26
CCDC88B-201ENST00000301897 RTTNQ86VV8 2226 aa13.43□□□□□ -0.26
CCDC88B-201ENST00000301897 LY6G6DO95868 133 aa13.43□□□□□ -0.26
CCDC88B-201ENST00000301897 CT62P0C5K7 136 aa13.43□□□□□ -0.26
CCDC88B-201ENST00000301897 MTHFD2P13995 350 aa13.43□□□□□ -0.26
CCDC88B-201ENST00000301897 NT5EP21589 574 aa13.43□□□□□ -0.26
CCDC88B-201ENST00000301897 SLCO1A2P46721 670 aa13.43□□□□□ -0.26
CCDC88B-201ENST00000301897 SRYQ05066 204 aa13.43□□□□□ -0.26
CCDC88B-201ENST00000301897 DLG1Q12959 904 aa13.43□□□□□ -0.26
CCDC88B-201ENST00000301897 GTF2H2Q13888 395 aa13.43□□□□□ -0.26
CCDC88B-201ENST00000301897 PFKFB4Q16877 469 aa13.43□□□□□ -0.26
CCDC88B-201ENST00000301897 GTF2H2CQ6P1K8 395 aa13.43□□□□□ -0.26
CCDC88B-201ENST00000301897 GRAMD2AQ8IUY3 354 aa13.43□□□□□ -0.26
CCDC88B-201ENST00000301897 TRIM42Q8IWZ5 723 aa13.43□□□□□ -0.26
CCDC88B-201ENST00000301897 WDR20Q8TBZ3 569 aa13.43□□□□□ -0.26
CCDC88B-201ENST00000301897 HGDQ93099 445 aa13.43□□□□□ -0.26
CCDC88B-201ENST00000301897 TMCO6Q96DC7 493 aa13.43□□□□□ -0.26
CCDC88B-201ENST00000301897 LCORQ96JN0 433 aaPredicted RBP13.43□□□□□ -0.26
CCDC88B-201ENST00000301897 WHRNQ9P202 907 aa13.43□□□□□ -0.26
CCDC88B-201ENST00000301897 CLCF1Q9UBD9 225 aa13.43□□□□□ -0.26
CCDC88B-201ENST00000301897 PSME2Q9UL46 239 aa13.43□□□□□ -0.26
CCDC88B-201ENST00000301897 DLGAP4Q9Y2H0 992 aa13.43□□□□□ -0.26
CCDC88B-201ENST00000301897 A0A087X1B8 175 aa13.42□□□□□ -0.26
CCDC88B-201ENST00000301897 A0A1W2PPR1 153 aa13.42□□□□□ -0.26
CCDC88B-201ENST00000301897 PRAMEF25A6NGN4 478 aa13.42□□□□□ -0.26
CCDC88B-201ENST00000301897 CTIFO43310 598 aaKnown RBP13.42□□□□□ -0.26
CCDC88B-201ENST00000301897 ABCB7O75027 752 aa13.42□□□□□ -0.26
CCDC88B-201ENST00000301897 CLDN9O95484 217 aa13.42□□□□□ -0.26
CCDC88B-201ENST00000301897 S1PR1P21453 382 aa13.42□□□□□ -0.26
CCDC88B-201ENST00000301897 SRD5A2P31213 254 aa13.42□□□□□ -0.26
CCDC88B-201ENST00000301897 MC3RP41968 323 aa13.42□□□□□ -0.26
CCDC88B-201ENST00000301897 GFRA1P56159 465 aa13.42□□□□□ -0.26
CCDC88B-201ENST00000301897 PSPHP78330 225 aa13.42□□□□□ -0.26
CCDC88B-201ENST00000301897 PLCXD2Q0VAA5 305 aa13.42□□□□□ -0.26
CCDC88B-201ENST00000301897 MAP4K2Q12851 820 aa13.42□□□□□ -0.26
CCDC88B-201ENST00000301897 OR2A2Q6IF42 318 aa13.42□□□□□ -0.26
CCDC88B-201ENST00000301897 KLC3Q6P597 504 aa13.42□□□□□ -0.26
CCDC88B-201ENST00000301897 C20orf204Q6ZNR8 217 aa13.42□□□□□ -0.26
CCDC88B-201ENST00000301897 CMC1Q7Z7K0 106 aa13.42□□□□□ -0.26
CCDC88B-201ENST00000301897 GBP7Q8N8V2 638 aaPredicted RBP13.42□□□□□ -0.26
CCDC88B-201ENST00000301897 SLC44A1Q8WWI5 657 aa13.42□□□□□ -0.26
CCDC88B-201ENST00000301897 NXNL1Q96CM4 212 aa13.42□□□□□ -0.26
CCDC88B-201ENST00000301897 OMA1Q96E52 524 aa13.42□□□□□ -0.26
CCDC88B-201ENST00000301897 IPPKQ9H8X2 491 aa13.42□□□□□ -0.26
CCDC88B-201ENST00000301897 SERHLQ9NQF3 203 aa13.42□□□□□ -0.26
CCDC88B-201ENST00000301897 TAS2R10Q9NYW0 307 aa13.42□□□□□ -0.26
CCDC88B-201ENST00000301897 RNF14Q9UBS8 474 aa13.42□□□□□ -0.26
CCDC88B-201ENST00000301897 PRODH2Q9UF12 536 aa13.42□□□□□ -0.26
CCDC88B-201ENST00000301897 MAPRE3Q9UPY8 281 aa13.42□□□□□ -0.26
CCDC88B-201ENST00000301897 MRPS18CQ9Y3D5 142 aaKnown RBP13.42□□□□□ -0.26
CCDC88B-201ENST00000301897 SAR1BQ9Y6B6 198 aa13.42□□□□□ -0.26
CCDC88B-201ENST00000301897 DSCAMO60469 2012 aa13.42□□□□□ -0.26
CCDC88B-201ENST00000301897 A0A1W2PNV4 684 aa13.41□□□□□ -0.26
CCDC88B-201ENST00000301897 H7C1Q1 480 aa13.41□□□□□ -0.26
CCDC88B-201ENST00000301897 PLOD2O00469 737 aa13.41□□□□□ -0.26
CCDC88B-201ENST00000301897 GBAP04062 536 aa13.41□□□□□ -0.26
CCDC88B-201ENST00000301897 ATP1B1P05026 303 aa13.41□□□□□ -0.26
CCDC88B-201ENST00000301897 STX2P32856 288 aa13.41□□□□□ -0.26
CCDC88B-201ENST00000301897 DEKP35659 375 aaKnown RBP13.41□□□□□ -0.26
CCDC88B-201ENST00000301897 SOX18P35713 384 aa13.41□□□□□ -0.26
CCDC88B-201ENST00000301897 CPOXP36551 454 aa13.41□□□□□ -0.26
CCDC88B-201ENST00000301897 PPICP45877 212 aa13.41□□□□□ -0.26
CCDC88B-201ENST00000301897 LHX2P50458 406 aa13.41□□□□□ -0.26
CCDC88B-201ENST00000301897 PPP2R2BQ00005 443 aa13.41□□□□□ -0.26
CCDC88B-201ENST00000301897 ACAP2Q15057 778 aa13.41□□□□□ -0.26
CCDC88B-201ENST00000301897 BCL2A1Q16548 175 aa13.41□□□□□ -0.26
CCDC88B-201ENST00000301897 CCNYL2Q5T2Q4 361 aa13.41□□□□□ -0.26
CCDC88B-201ENST00000301897 CHMP1BQ7LBR1 199 aa13.41□□□□□ -0.26
CCDC88B-201ENST00000301897 GOLGA7Q7Z5G4 137 aa13.41□□□□□ -0.26
CCDC88B-201ENST00000301897 PLCZ1Q86YW0 608 aa13.41□□□□□ -0.26
CCDC88B-201ENST00000301897 GCNT2Q8N0V5 402 aa13.41□□□□□ -0.26
CCDC88B-201ENST00000301897 PPM1NQ8N819 430 aa13.41□□□□□ -0.26
CCDC88B-201ENST00000301897 TRPC4APQ8TEL6 797 aa13.41□□□□□ -0.26
CCDC88B-201ENST00000301897 NODALQ96S42 347 aa13.41□□□□□ -0.26
CCDC88B-201ENST00000301897 CCL19Q99731 98 aa13.41□□□□□ -0.26
CCDC88B-201ENST00000301897 LRRC1Q9BTT6 524 aa13.41□□□□□ -0.26
CCDC88B-201ENST00000301897 GALNT9Q9HCQ5 603 aa13.41□□□□□ -0.26
CCDC88B-201ENST00000301897 BCAP29Q9UHQ4 241 aa13.41□□□□□ -0.26
CCDC88B-201ENST00000301897 RNF11Q9Y3C5 154 aa13.41□□□□□ -0.26
CCDC88B-201ENST00000301897 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.4□□□□□ -0.26
CCDC88B-201ENST00000301897 A0A1W2PS29 197 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms