RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 GPR39O43194 453 aa17.58■□□□□ 0.41
PCDH1-201ENST00000287008 ZNF28P17035 718 aa17.58■□□□□ 0.41
PCDH1-201ENST00000287008 HK3P52790 923 aa17.58■□□□□ 0.41
PCDH1-201ENST00000287008 CRISP1P54107 249 aa17.58■□□□□ 0.41
PCDH1-201ENST00000287008 ZNF782Q6ZMW2 699 aaPredicted RBP17.58■□□□□ 0.41
PCDH1-201ENST00000287008 SLC44A3Q8N4M1 653 aa17.58■□□□□ 0.41
PCDH1-201ENST00000287008 OR4K5Q8NGD3 323 aa17.58■□□□□ 0.41
PCDH1-201ENST00000287008 OR2T4Q8NH00 348 aa17.58■□□□□ 0.41
PCDH1-201ENST00000287008 PROKR1Q8TCW9 393 aa17.58■□□□□ 0.41
PCDH1-201ENST00000287008 S100A16Q96FQ6 103 aaKnown RBP17.58■□□□□ 0.41
PCDH1-201ENST00000287008 SMIM14Q96QK8 99 aa17.58■□□□□ 0.41
PCDH1-201ENST00000287008 G3V2L1 256 aa17.58■□□□□ 0.4
PCDH1-201ENST00000287008 PYCR1P32322 319 aa17.58■□□□□ 0.4
PCDH1-201ENST00000287008 CEACAM7Q14002 265 aa17.58■□□□□ 0.4
PCDH1-201ENST00000287008 HMBOX1Q6NT76 420 aa17.58■□□□□ 0.4
PCDH1-201ENST00000287008 SNX29P2Q8IUI4 249 aa17.58■□□□□ 0.4
PCDH1-201ENST00000287008 NLGN4YQ8NFZ3 816 aaPredicted RBP17.58■□□□□ 0.4
PCDH1-201ENST00000287008 SLC39A1Q9NY26 324 aa17.58■□□□□ 0.4
PCDH1-201ENST00000287008 CLEC4EQ9ULY5 219 aa17.58■□□□□ 0.4
PCDH1-201ENST00000287008 C5P01031 1676 aa17.58■□□□□ 0.4
PCDH1-201ENST00000287008 CLIC3O95833 236 aa17.58■□□□□ 0.4
PCDH1-201ENST00000287008 RPS17P08708 135 aaKnown RBP17.58■□□□□ 0.4
PCDH1-201ENST00000287008 DCKP27707 260 aa17.58■□□□□ 0.4
PCDH1-201ENST00000287008 AOAHP28039 575 aa17.58■□□□□ 0.4
PCDH1-201ENST00000287008 MC3RP41968 323 aa17.58■□□□□ 0.4
PCDH1-201ENST00000287008 TUBA1BP68363 451 aa17.58■□□□□ 0.4
PCDH1-201ENST00000287008 TUBA4AP68366 448 aa17.58■□□□□ 0.4
PCDH1-201ENST00000287008 GALK2Q01415 458 aa17.58■□□□□ 0.4
PCDH1-201ENST00000287008 SRYQ05066 204 aa17.58■□□□□ 0.4
PCDH1-201ENST00000287008 SHISA6Q6ZSJ9 500 aa17.58■□□□□ 0.4
PCDH1-201ENST00000287008 TUBA1AQ71U36 451 aa17.58■□□□□ 0.4
PCDH1-201ENST00000287008 PAQR7Q86WK9 346 aa17.58■□□□□ 0.4
PCDH1-201ENST00000287008 CWH43Q9H720 699 aa17.58■□□□□ 0.4
PCDH1-201ENST00000287008 RNF6Q9Y252 685 aa17.58■□□□□ 0.4
PCDH1-201ENST00000287008 PRDX1Q06830 199 aaKnown RBP17.58■□□□□ 0.4
PCDH1-201ENST00000287008 PRAMEF17Q5VTA0 474 aa17.58■□□□□ 0.4
PCDH1-201ENST00000287008 OR13J1Q8NGT2 312 aa17.58■□□□□ 0.4
PCDH1-201ENST00000287008 RADILQ96JH8 1075 aa17.58■□□□□ 0.4
PCDH1-201ENST00000287008 PITX2Q99697 317 aa17.58■□□□□ 0.4
PCDH1-201ENST00000287008 BARD1Q99728 777 aaKnown RBP17.58■□□□□ 0.4
PCDH1-201ENST00000287008 GSTO2Q9H4Y5 243 aa17.58■□□□□ 0.4
PCDH1-201ENST00000287008 SDR39U1Q9NRG7 319 aaPredicted RBP17.58■□□□□ 0.4
PCDH1-201ENST00000287008 A0A1B0GTW7 788 aa17.57■□□□□ 0.4
PCDH1-201ENST00000287008 A6NL46 340 aa17.57■□□□□ 0.4
PCDH1-201ENST00000287008 H3BNC9 293 aa17.57■□□□□ 0.4
PCDH1-201ENST00000287008 L7N2F9 121 aa17.57■□□□□ 0.4
PCDH1-201ENST00000287008 EDIL3O43854 480 aa17.57■□□□□ 0.4
PCDH1-201ENST00000287008 ABCB7O75027 752 aa17.57■□□□□ 0.4
PCDH1-201ENST00000287008 CLPXO76031 633 aa17.57■□□□□ 0.4
PCDH1-201ENST00000287008 PSKH1P11801 424 aa17.57■□□□□ 0.4
PCDH1-201ENST00000287008 DDCP20711 480 aa17.57■□□□□ 0.4
PCDH1-201ENST00000287008 VAMP2P63027 116 aa17.57■□□□□ 0.4
PCDH1-201ENST00000287008 MGAT3Q09327 533 aa17.57■□□□□ 0.4
PCDH1-201ENST00000287008 RTN4RL1Q86UN2 441 aaPredicted RBP17.57■□□□□ 0.4
PCDH1-201ENST00000287008 LIX1LQ8IVB5 337 aa17.57■□□□□ 0.4
PCDH1-201ENST00000287008 AASSQ9UDR5 926 aa17.57■□□□□ 0.4
PCDH1-201ENST00000287008 C17orf113A0A1B0GUU1 675 aa17.57■□□□□ 0.4
PCDH1-201ENST00000287008 VAMP1P23763 118 aa17.57■□□□□ 0.4
PCDH1-201ENST00000287008 AFF3P51826 1226 aaKnown RBP17.57■□□□□ 0.4
PCDH1-201ENST00000287008 ECH1Q13011 328 aa17.57■□□□□ 0.4
PCDH1-201ENST00000287008 GTF2IRD2BQ6EKJ0 949 aa17.57■□□□□ 0.4
PCDH1-201ENST00000287008 GTF2IRD2Q86UP8 949 aa17.57■□□□□ 0.4
PCDH1-201ENST00000287008 GOLM1Q8NBJ4 401 aa17.57■□□□□ 0.4
PCDH1-201ENST00000287008 METTL2AQ96IZ6 378 aaKnown RBP17.57■□□□□ 0.4
PCDH1-201ENST00000287008 APOL3O95236 402 aa17.57■□□□□ 0.4
PCDH1-201ENST00000287008 GPR4P46093 362 aa17.57■□□□□ 0.4
PCDH1-201ENST00000287008 HERV-K104P61576 105 aa17.57■□□□□ 0.4
PCDH1-201ENST00000287008 ARG2P78540 354 aa17.57■□□□□ 0.4
PCDH1-201ENST00000287008 MALLQ13021 153 aa17.57■□□□□ 0.4
PCDH1-201ENST00000287008 ZNF611Q8N823 705 aa17.57■□□□□ 0.4
PCDH1-201ENST00000287008 ASB11Q8WXH4 323 aa17.57■□□□□ 0.4
PCDH1-201ENST00000287008 MUS81Q96NY9 551 aa17.57■□□□□ 0.4
PCDH1-201ENST00000287008 PCDH10Q9P2E7 1040 aa17.57■□□□□ 0.4
PCDH1-201ENST00000287008 ENPP4Q9Y6X5 453 aa17.57■□□□□ 0.4
PCDH1-201ENST00000287008 CHP2O43745 196 aa17.56■□□□□ 0.4
PCDH1-201ENST00000287008 EIF5AP63241 154 aaKnown RBP17.56■□□□□ 0.4
PCDH1-201ENST00000287008 PRKCDQ05655 676 aa17.56■□□□□ 0.4
PCDH1-201ENST00000287008 NADK2Q4G0N4 442 aa17.56■□□□□ 0.4
PCDH1-201ENST00000287008 TMEM31Q5JXX7 168 aa17.56■□□□□ 0.4
PCDH1-201ENST00000287008 ENPP6Q6UWR7 440 aa17.56■□□□□ 0.4
PCDH1-201ENST00000287008 ACBD7Q8N6N7 88 aa17.56■□□□□ 0.4
PCDH1-201ENST00000287008 KCMF1Q9P0J7 381 aa17.56■□□□□ 0.4
PCDH1-201ENST00000287008 ERVK-19Q9WJR5 959 aa17.56■□□□□ 0.4
PCDH1-201ENST00000287008 H0YAE9 185 aa17.56■□□□□ 0.4
PCDH1-201ENST00000287008 SRPX2O60687 465 aaPredicted RBP17.56■□□□□ 0.4
PCDH1-201ENST00000287008 EEF1A1P5Q5VTE0 462 aa17.56■□□□□ 0.4
PCDH1-201ENST00000287008 ZNF773Q6PK81 442 aa17.56■□□□□ 0.4
PCDH1-201ENST00000287008 DDIT4LQ96D03 193 aa17.56■□□□□ 0.4
PCDH1-201ENST00000287008 FRMD6Q96NE9 622 aa17.56■□□□□ 0.4
PCDH1-201ENST00000287008 NTMT1Q9BV86 223 aa17.56■□□□□ 0.4
PCDH1-201ENST00000287008 STARD5Q9NSY2 213 aa17.56■□□□□ 0.4
PCDH1-201ENST00000287008 TAS2R10Q9NYW0 307 aa17.56■□□□□ 0.4
PCDH1-201ENST00000287008 NKX1-2Q9UD57 310 aaPredicted RBP17.56■□□□□ 0.4
PCDH1-201ENST00000287008 C4AP0C0L4 1744 aa17.56■□□□□ 0.4
PCDH1-201ENST00000287008 TEX13DA0A0J9YY54 714 aaPredicted RBP17.56■□□□□ 0.4
PCDH1-201ENST00000287008 FTCDNL1E5RQL4 147 aa17.56■□□□□ 0.4
PCDH1-201ENST00000287008 SNNO75324 88 aaPredicted RBP17.56■□□□□ 0.4
PCDH1-201ENST00000287008 ATE1O95260 518 aa17.56■□□□□ 0.4
PCDH1-201ENST00000287008 C1orf105O95561 183 aa17.56■□□□□ 0.4
PCDH1-201ENST00000287008 RAB39AQ14964 217 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms