RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 OR9A1PQ8NGU1 263 aa13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 CDCA5Q96FF9 252 aa13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 P2RY13Q9BPV8 354 aa13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 QPCTLQ9NXS2 382 aa13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 SLC6A14Q9UN76 642 aa13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 EBLN1P0CF75 366 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 FKBP1AP62942 108 aaKnown RBP13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 SULF2Q8IWU5 870 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 C15orf54Q8N8G6 183 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 KCNMB3Q9NPA1 279 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 SARDHQ9UL12 918 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 SCML2Q9UQR0 700 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 LRIT3Q3SXY7 679 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 TMEM53Q6P2H8 277 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 METTL2AQ96IZ6 378 aaKnown RBP13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 GPR20Q99678 358 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 TTTY10Q9BZA0 68 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 PCDHB10Q9UN67 800 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 LOXHD1Q8IVV2 1947 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 PLSCR5A0PG75 271 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 SYT7O43581 403 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 TMEM63AO94886 807 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 PABPC4LP0CB38 370 aaKnown RBP13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 ADH5P11766 374 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 NDUFA6P56556 154 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 ZNF704Q6ZNC4 412 aaPredicted RBP13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 PRR18Q8N4B5 295 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 OR2A12Q8NGT7 310 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 ADAMTS18Q8TE60 1221 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 FRS2Q8WU20 508 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 PWWP2AQ96N64 755 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 TRAF3IP2O43734 574 aaPredicted RBP13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 FBLP22087 321 aaKnown RBP13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 GRIN2CQ14957 1233 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 VWA5B2Q8N398 1253 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 PREBQ9HCU5 417 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 IGFBP1P08833 259 aaPredicted RBP13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 MRPS10P82664 201 aaKnown RBP13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 ZNF783Q6ZMS7 281 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 OR56B4Q8NH76 319 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 PDCD1LG2Q9BQ51 273 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 KCNQ2O43526 872 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 CILPO75339 1184 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 DIRAS1O95057 198 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 PTGER4P35408 488 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 EMX2Q04743 252 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 KBTBD6Q86V97 674 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 SCML4Q8N228 414 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 PAQR8Q8TEZ7 354 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 PSD2Q9BQI7 771 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 DOHHQ9BU89 302 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 SLIT1O75093 1534 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 AKAIN1P0CW23 69 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 BDKRB1P46663 353 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 DGKQP52824 942 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 PHYHD1Q5SRE7 291 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 VSIG10LQ86VR7 867 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 LSMEM2Q8N112 164 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 B3GNT5Q9BYG0 378 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 PATZ1Q9HBE1 687 aaKnown RBP13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 PLA2R1Q13018 1463 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 IQSEC2Q5JU85 1478 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 RPS10-NUDT3A0A1W2PQS6 291 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 EOMESO95936 686 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 P04436 131 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 SHMT2P34897 504 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 RPS10P46783 165 aaKnown RBP13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 CNN3Q15417 329 aaKnown RBP13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 RNF111Q6ZNA4 994 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 CD163Q86VB7 1156 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 OR8D2Q9GZM6 311 aa13.32□□□□□ -0.28
CCDC88A-201ENST00000263630 JCADQ9P266 1359 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 hCG_1809904A0A1W2PP81 198 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 A0A1W2PPE2 198 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 A0A1W2PR64 198 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 A0A1W2PRV1 198 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 CEBPZOSA8MTT3 80 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 WASH4PA8MWX3 477 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 GABRA3P34903 492 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 ZNF74Q16587 644 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 TMEM71Q6P5X7 295 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 UHRF1Q96T88 793 aaPredicted RBP13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 NICN1Q9BSH3 213 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 NMNAT2Q9BZQ4 307 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 FBXL12Q9NXK8 326 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 ZC3H13Q5T200 1668 aaKnown RBP13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 NWD1Q149M9 1564 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 FAM227AF5H4B4 570 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 LIPJQ5W064 366 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 ZNF776Q68DI1 518 aaPredicted RBP13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 RBMXL3Q8N7X1 1067 aaKnown RBP13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 OR8J3Q8NGG0 315 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 M1APQ8TC57 530 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 ZNF446Q9NWS9 450 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 HSPE1-MOB4S4R3N1 261 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 SOCS2O14508 198 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 CKMT2P17540 419 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 UBE2KP61086 200 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 HES5Q5TA89 166 aa13.31□□□□□ -0.28
CCDC88A-201ENST00000263630 NDUFAF5Q5TEU4 345 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms