RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 SLC25A38Q96DW6 304 aa2.46□□□□□ -2.02
CD44-239ENST00000639002 GBP5Q96PP8 586 aa2.46□□□□□ -2.02
CD44-239ENST00000639002 SPAG8Q99932 426 aaPredicted RBP2.46□□□□□ -2.02
CD44-239ENST00000639002 SCRT1Q9BWW7 348 aa2.46□□□□□ -2.02
CD44-239ENST00000639002 TUFT1Q9NNX1 390 aa2.46□□□□□ -2.02
CD44-239ENST00000639002 KCNMB3Q9NPA1 279 aa2.46□□□□□ -2.02
CD44-239ENST00000639002 VPS18Q9P253 973 aa2.46□□□□□ -2.02
CD44-239ENST00000639002 RLFQ13129 1914 aa2.46□□□□□ -2.02
CD44-239ENST00000639002 AFF2P51816 1311 aa2.45□□□□□ -2.02
CD44-239ENST00000639002 PDXKO00764 312 aa2.45□□□□□ -2.02
CD44-239ENST00000639002 LRP3O75074 770 aa2.45□□□□□ -2.02
CD44-239ENST00000639002 GH1P01241 217 aa2.45□□□□□ -2.02
CD44-239ENST00000639002 TPBGLP0DKB5 382 aa2.45□□□□□ -2.02
CD44-239ENST00000639002 SLC12A3P55017 1021 aa2.45□□□□□ -2.02
CD44-239ENST00000639002 VCPP55072 806 aaKnown RBP2.45□□□□□ -2.02
CD44-239ENST00000639002 LINC00315P59091 139 aa2.45□□□□□ -2.02
CD44-239ENST00000639002 HAND2P61296 217 aa2.45□□□□□ -2.02
CD44-239ENST00000639002 EBI3Q14213 229 aa2.45□□□□□ -2.02
CD44-239ENST00000639002 NFE2L1Q14494 772 aa2.45□□□□□ -2.02
CD44-239ENST00000639002 HERPUD1Q15011 391 aa2.45□□□□□ -2.02
CD44-239ENST00000639002 KRT31Q15323 416 aa2.45□□□□□ -2.02
CD44-239ENST00000639002 EPC2Q52LR7 807 aa2.45□□□□□ -2.02
CD44-239ENST00000639002 PAGE2BQ5JRK9 111 aa2.45□□□□□ -2.02
CD44-239ENST00000639002 LRRC38Q5VT99 294 aa2.45□□□□□ -2.02
CD44-239ENST00000639002 IL34Q6ZMJ4 242 aa2.45□□□□□ -2.02
CD44-239ENST00000639002 LINC00518Q8N0U6 118 aa2.45□□□□□ -2.02
CD44-239ENST00000639002 CCDC89Q8N998 374 aa2.45□□□□□ -2.02
CD44-239ENST00000639002 UBTD2Q8WUN7 234 aa2.45□□□□□ -2.02
CD44-239ENST00000639002 CXorf58Q96LI9 332 aa2.45□□□□□ -2.02
CD44-239ENST00000639002 SLC26A1Q9H2B4 701 aa2.45□□□□□ -2.02
CD44-239ENST00000639002 HPS4Q9NQG7 708 aa2.45□□□□□ -2.02
CD44-239ENST00000639002 CENPMQ9NSP4 180 aa2.45□□□□□ -2.02
CD44-239ENST00000639002 TERF2IPQ9NYB0 399 aa2.45□□□□□ -2.02
CD44-239ENST00000639002 TUBGCP4Q9UGJ1 667 aa2.45□□□□□ -2.02
CD44-239ENST00000639002 ZNF221Q9UK13 617 aa2.45□□□□□ -2.02
CD44-239ENST00000639002 OOEPA6NGQ2 149 aa2.44□□□□□ -2.02
CD44-239ENST00000639002 YJEFN3A6XGL0 299 aa2.44□□□□□ -2.02
CD44-239ENST00000639002 CHRNGP07510 517 aa2.44□□□□□ -2.02
CD44-239ENST00000639002 C8orf89P0DMQ9 161 aa2.44□□□□□ -2.02
CD44-239ENST00000639002 MBL2P11226 248 aaPredicted RBP2.44□□□□□ -2.02
CD44-239ENST00000639002 PSG2P11465 335 aa2.44□□□□□ -2.02
CD44-239ENST00000639002 IGHV1-2P23083 117 aa2.44□□□□□ -2.02
CD44-239ENST00000639002 RPS4XP62701 263 aaKnown RBP2.44□□□□□ -2.02
CD44-239ENST00000639002 KLF5Q13887 457 aaPredicted RBP2.44□□□□□ -2.02
CD44-239ENST00000639002 GLYR1Q49A26 553 aaPredicted RBP2.44□□□□□ -2.02
CD44-239ENST00000639002 TFDP3Q5H9I0 405 aa2.44□□□□□ -2.02
CD44-239ENST00000639002 CLEC4GQ6UXB4 293 aa2.44□□□□□ -2.02
CD44-239ENST00000639002 LUZP1Q86V48 1076 aa2.44□□□□□ -2.02
CD44-239ENST00000639002 SIAH3Q8IW03 269 aa2.44□□□□□ -2.02
CD44-239ENST00000639002 FNDC8Q8TC99 324 aa2.44□□□□□ -2.02
CD44-239ENST00000639002 IL22RA2Q969J5 263 aa2.44□□□□□ -2.02
CD44-239ENST00000639002 MRPL53Q96EL3 112 aaKnown RBP2.44□□□□□ -2.02
CD44-239ENST00000639002 EPSTI1Q96J88 318 aa2.44□□□□□ -2.02
CD44-239ENST00000639002 COG3Q96JB2 828 aa2.44□□□□□ -2.02
CD44-239ENST00000639002 PANX3Q96QZ0 392 aa2.44□□□□□ -2.02
CD44-239ENST00000639002 DPH7Q9BTV6 452 aa2.44□□□□□ -2.02
CD44-239ENST00000639002 ELOVL4Q9GZR5 314 aa2.44□□□□□ -2.02
CD44-239ENST00000639002 DCTPP1Q9H773 170 aa2.44□□□□□ -2.02
CD44-239ENST00000639002 NRN1Q9NPD7 142 aa2.44□□□□□ -2.02
CD44-239ENST00000639002 ESM1Q9NQ30 184 aa2.44□□□□□ -2.02
CD44-239ENST00000639002 SEPT10Q9P0V9 454 aa2.44□□□□□ -2.02
CD44-239ENST00000639002 FBXL5Q9UKA1 691 aa2.44□□□□□ -2.02
CD44-239ENST00000639002 MRTO4Q9UKD2 239 aaKnown RBP2.44□□□□□ -2.02
CD44-239ENST00000639002 CDH7Q9ULB5 785 aa2.44□□□□□ -2.02
CD44-239ENST00000639002 EXOC7Q9UPT5 735 aa2.44□□□□□ -2.02
CD44-239ENST00000639002 MYO10Q9HD67 2058 aa2.43□□□□□ -2.02
CD44-239ENST00000639002 EEF2KO00418 725 aaKnown RBP2.43□□□□□ -2.02
CD44-239ENST00000639002 LATO43561 262 aa2.43□□□□□ -2.02
CD44-239ENST00000639002 CCDC166P0CW27 439 aa2.43□□□□□ -2.02
CD44-239ENST00000639002 CYP3A5P20815 502 aa2.43□□□□□ -2.02
CD44-239ENST00000639002 CCNE1P24864 410 aa2.43□□□□□ -2.02
CD44-239ENST00000639002 OR3A4PP47883 348 aa2.43□□□□□ -2.02
CD44-239ENST00000639002 UCP2P55851 309 aa2.43□□□□□ -2.02
CD44-239ENST00000639002 RPS8P62241 208 aaKnown RBP2.43□□□□□ -2.02
CD44-239ENST00000639002 SCN1BQ07699 218 aa2.43□□□□□ -2.02
CD44-239ENST00000639002 PRR4Q16378 134 aa2.43□□□□□ -2.02
CD44-239ENST00000639002 KYAT1Q16773 422 aa2.43□□□□□ -2.02
CD44-239ENST00000639002 HAGHQ16775 308 aa2.43□□□□□ -2.02
CD44-239ENST00000639002 ZNF528Q3MIS6 628 aa2.43□□□□□ -2.02
CD44-239ENST00000639002 NUP93Q8N1F7 819 aa2.43□□□□□ -2.02
CD44-239ENST00000639002 LINC01555Q8NAE3 123 aa2.43□□□□□ -2.02
CD44-239ENST00000639002 HAS2Q92819 552 aa2.43□□□□□ -2.02
CD44-239ENST00000639002 TBX15Q96SF7 602 aa2.43□□□□□ -2.02
CD44-239ENST00000639002 MLPHQ9BV36 600 aaPredicted RBP2.43□□□□□ -2.02
CD44-239ENST00000639002 HCAR1Q9BXC0 346 aa2.43□□□□□ -2.02
CD44-239ENST00000639002 AP1M1Q9BXS5 423 aa2.43□□□□□ -2.02
CD44-239ENST00000639002 EDEM3Q9BZQ6 932 aa2.43□□□□□ -2.02
CD44-239ENST00000639002 OPN3Q9H1Y3 402 aaPredicted RBP2.43□□□□□ -2.02
CD44-239ENST00000639002 TMEM206Q9H813 350 aa2.43□□□□□ -2.02
CD44-239ENST00000639002 DDX28Q9NUL7 540 aaKnown RBP2.43□□□□□ -2.02
CD44-239ENST00000639002 TMEM161AQ9NX61 479 aa2.43□□□□□ -2.02
CD44-239ENST00000639002 TEKT2Q9UIF3 430 aa2.43□□□□□ -2.02
CD44-239ENST00000639002 DIMT1Q9UNQ2 313 aaKnown RBP2.43□□□□□ -2.02
CD44-239ENST00000639002 KCNK6Q9Y257 313 aa2.43□□□□□ -2.02
CD44-239ENST00000639002 FLVCR1Q9Y5Y0 555 aa2.43□□□□□ -2.02
CD44-239ENST00000639002 SYNJ2O15056 1496 aa2.42□□□□□ -2.02
CD44-239ENST00000639002 CYB561D2O14569 222 aa2.42□□□□□ -2.02
CD44-239ENST00000639002 WDR46O15213 610 aaKnown RBP2.42□□□□□ -2.02
CD44-239ENST00000639002 PTK6Q13882 451 aa2.42□□□□□ -2.02
CD44-239ENST00000639002 ZIC1Q15915 447 aa2.42□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms