RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 MATN4O95460 622 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 C1RP00736 705 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 EGFP01133 1207 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 PRPS2P11908 318 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 CPN1P15169 458 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 DRD5P21918 477 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 RGS4P49798 205 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 AKR1C2P52895 323 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 AKR1C1Q04828 323 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 CAMK2DQ13557 499 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 ARHGAP19Q14CB8 494 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 ZNF674Q2M3X9 581 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 PRSS36Q5K4E3 855 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 ESRP1Q6NXG1 681 aaKnown RBP5.47□□□□□ -1.53
SCN1A-216ENST00000637968 DEGS2Q6QHC5 323 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 TMEM107Q6UX40 140 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 GPRC5AQ8NFJ5 357 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 OR11H7Q8NGC8 314 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 OR5M9Q8NGP3 310 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 OR6X1Q8NH79 312 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 OIT3Q8WWZ8 545 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 NTAN1Q96AB6 310 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 MISP3Q96FF7 219 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 C7orf34Q96L11 122 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 OR14A2Q96R54 314 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 MRPL45Q9BRJ2 306 aaKnown RBP5.47□□□□□ -1.53
SCN1A-216ENST00000637968 DPY30Q9C005 99 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 NLE1Q9NVX2 485 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-216ENST00000637968 ZMYM5Q9UJ78 669 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 COL5A2P05997 1499 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-216ENST00000637968 SLC35F4A4IF30 521 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 C5orf52A6NGY3 159 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 LRRTM2O43300 516 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 CACNG3O60359 315 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 KERAO60938 352 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 STBD1O95210 358 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 F10P00742 488 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 OPN1LWP04000 364 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 BMP7P18075 431 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 GKP32189 559 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 PCGF2P35227 344 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 FAUP35544 74 aaKnown RBP5.47□□□□□ -1.53
SCN1A-216ENST00000637968 RNF144AP50876 292 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-216ENST00000637968 MEF2AQ02078 507 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-216ENST00000637968 SF1Q15637 639 aaKnown RBP5.47□□□□□ -1.53
SCN1A-216ENST00000637968 ZNF630Q2M218 657 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-216ENST00000637968 CRY2Q49AN0 593 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 C1orf185Q5T7R7 199 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 STEAP4Q687X5 459 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 OR10K2Q6IF99 312 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 SMIM5Q71RC9 77 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 RIMKLAQ8IXN7 391 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 NAXEQ8NCW5 288 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 OR11H4Q8NGC9 324 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 LMO3Q8TAP4 145 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 IFI44Q8TCB0 444 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 OR8D1Q8WZ84 308 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 SLC25A46Q96AG3 418 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 FBXO17Q96EF6 278 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 NFKBIZQ9BYH8 718 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 NXF3Q9H4D5 531 aaKnown RBP5.47□□□□□ -1.53
SCN1A-216ENST00000637968 MVB12BQ9H7P6 319 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 HEXA-AS1Q9H8Q6 139 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 ELP3Q9H9T3 547 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 ICKQ9UPZ9 632 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 RPL36Q9Y3U8 105 aaKnown RBP5.47□□□□□ -1.53
SCN1A-216ENST00000637968 A0A087WZY1 265 aa5.46□□□□□ -1.53
SCN1A-216ENST00000637968 IRGMA1A4Y4 181 aa5.46□□□□□ -1.53
SCN1A-216ENST00000637968 ANXA9O76027 345 aa5.46□□□□□ -1.53
SCN1A-216ENST00000637968 RPP14O95059 124 aaKnown RBP5.46□□□□□ -1.53
SCN1A-216ENST00000637968 SCAF4O95104 1147 aaKnown RBP5.46□□□□□ -1.53
SCN1A-216ENST00000637968 CXCL14O95715 111 aa5.46□□□□□ -1.53
SCN1A-216ENST00000637968 MLYCDO95822 493 aa5.46□□□□□ -1.53
SCN1A-216ENST00000637968 TRUB2O95900 331 aaKnown RBP5.46□□□□□ -1.53
SCN1A-216ENST00000637968 IFNGP01579 166 aa5.46□□□□□ -1.53
SCN1A-216ENST00000637968 RPLP2P05387 115 aaKnown RBP5.46□□□□□ -1.53
SCN1A-216ENST00000637968 SNRNP70P08621 437 aaKnown RBP5.46□□□□□ -1.53
SCN1A-216ENST00000637968 HOXC12P31275 282 aa5.46□□□□□ -1.53
SCN1A-216ENST00000637968 GTF2A2P52657 109 aa5.46□□□□□ -1.53
SCN1A-216ENST00000637968 DLX5P56178 289 aa5.46□□□□□ -1.53
SCN1A-216ENST00000637968 CNTN1Q12860 1018 aa5.46□□□□□ -1.53
SCN1A-216ENST00000637968 LMAN2Q12907 356 aa5.46□□□□□ -1.53
SCN1A-216ENST00000637968 FAM187BQ17R55 369 aa5.46□□□□□ -1.53
SCN1A-216ENST00000637968 DUOXA2Q1HG44 320 aa5.46□□□□□ -1.53
SCN1A-216ENST00000637968 DMRTA1Q5VZB9 504 aa5.46□□□□□ -1.53
SCN1A-216ENST00000637968 TXNRD3NBQ6F5E7 133 aa5.46□□□□□ -1.53
SCN1A-216ENST00000637968 NAPEPLDQ6IQ20 393 aa5.46□□□□□ -1.53
SCN1A-216ENST00000637968 C16orf59Q7L2K0 433 aa5.46□□□□□ -1.53
SCN1A-216ENST00000637968 LINGO2Q7L985 606 aa5.46□□□□□ -1.53
SCN1A-216ENST00000637968 PLEKHH3Q7Z736 793 aa5.46□□□□□ -1.53
SCN1A-216ENST00000637968 MARCH9Q86YJ5 346 aa5.46□□□□□ -1.53
SCN1A-216ENST00000637968 TRAPPC5Q8IUR0 188 aa5.46□□□□□ -1.53
SCN1A-216ENST00000637968 IZUMO1Q8IYV9 350 aa5.46□□□□□ -1.53
SCN1A-216ENST00000637968 L3MBTL4Q8NA19 623 aa5.46□□□□□ -1.53
SCN1A-216ENST00000637968 INO80EQ8NBZ0 244 aaPredicted RBP5.46□□□□□ -1.53
SCN1A-216ENST00000637968 SMAP2Q8WU79 429 aaPredicted RBP5.46□□□□□ -1.53
SCN1A-216ENST00000637968 EDARADDQ8WWZ3 215 aa5.46□□□□□ -1.53
SCN1A-216ENST00000637968 PKP4Q99569 1192 aa5.46□□□□□ -1.53
SCN1A-216ENST00000637968 RSRP1Q9BUV0 290 aa5.46□□□□□ -1.53
SCN1A-216ENST00000637968 RIOK2Q9BVS4 552 aaKnown RBP5.46□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms