RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 AGERQ15109 404 aa12.03□□□□□ -0.48
LINC00540-203ENST00000631321 MRM1Q6IN84 353 aaKnown RBP12.03□□□□□ -0.48
LINC00540-203ENST00000631321 TMPRSS11AQ6ZMR5 421 aa12.03□□□□□ -0.48
LINC00540-203ENST00000631321 CACTIN-AS1Q8N1I8 211 aa12.03□□□□□ -0.48
LINC00540-203ENST00000631321 SUSD6Q92537 303 aa12.03□□□□□ -0.48
LINC00540-203ENST00000631321 SLC25A46Q96AG3 418 aa12.03□□□□□ -0.48
LINC00540-203ENST00000631321 LRR1Q96L50 414 aa12.03□□□□□ -0.48
LINC00540-203ENST00000631321 C17orf62Q9BQA9 187 aa12.03□□□□□ -0.48
LINC00540-203ENST00000631321 PINK1Q9BXM7 581 aa12.03□□□□□ -0.48
LINC00540-203ENST00000631321 C11orf49Q9H6J7 331 aa12.03□□□□□ -0.48
LINC00540-203ENST00000631321 FGF20Q9NP95 211 aaPredicted RBP12.03□□□□□ -0.48
LINC00540-203ENST00000631321 ISYNA1Q9NPH2 558 aa12.03□□□□□ -0.48
LINC00540-203ENST00000631321 TRPC4Q9UBN4 977 aa12.03□□□□□ -0.48
LINC00540-203ENST00000631321 FBXW2Q9UKT8 454 aa12.03□□□□□ -0.48
LINC00540-203ENST00000631321 GRIP1Q9Y3R0 1128 aa12.03□□□□□ -0.48
LINC00540-203ENST00000631321 CCDC88CQ9P219 2028 aa12.03□□□□□ -0.48
LINC00540-203ENST00000631321 A0A0G2JPF8 293 aa12.03□□□□□ -0.48
LINC00540-203ENST00000631321 HNRNPCL2B2RXH8 293 aa12.03□□□□□ -0.48
LINC00540-203ENST00000631321 HNRNPCL3B7ZW38 293 aa12.03□□□□□ -0.48
LINC00540-203ENST00000631321 WWP2O00308 870 aa12.03□□□□□ -0.48
LINC00540-203ENST00000631321 SYT5O00445 386 aa12.03□□□□□ -0.48
LINC00540-203ENST00000631321 STK25O00506 426 aa12.03□□□□□ -0.48
LINC00540-203ENST00000631321 HNRNPCL4P0DMR1 293 aa12.03□□□□□ -0.48
LINC00540-203ENST00000631321 ETV5P41161 510 aa12.03□□□□□ -0.48
LINC00540-203ENST00000631321 IL12RB1P42701 662 aa12.03□□□□□ -0.48
LINC00540-203ENST00000631321 ETV1P50549 477 aa12.03□□□□□ -0.48
LINC00540-203ENST00000631321 SMSP52788 366 aa12.03□□□□□ -0.48
LINC00540-203ENST00000631321 ARFIP1P53367 373 aa12.03□□□□□ -0.48
LINC00540-203ENST00000631321 MLF2Q15773 248 aaPredicted RBP12.03□□□□□ -0.48
LINC00540-203ENST00000631321 CARTPTQ16568 116 aa12.03□□□□□ -0.48
LINC00540-203ENST00000631321 KLHL22Q53GT1 634 aa12.03□□□□□ -0.48
LINC00540-203ENST00000631321 LIPKQ5VXJ0 399 aa12.03□□□□□ -0.48
LINC00540-203ENST00000631321 BHLHB9Q6PI77 547 aa12.03□□□□□ -0.48
LINC00540-203ENST00000631321 IQCHQ86VS3 1027 aa12.03□□□□□ -0.48
LINC00540-203ENST00000631321 CLDN22Q8N7P3 220 aa12.03□□□□□ -0.48
LINC00540-203ENST00000631321 OR2A1Q8NGT9 310 aa12.03□□□□□ -0.48
LINC00540-203ENST00000631321 GPR151Q8TDV0 419 aa12.03□□□□□ -0.48
LINC00540-203ENST00000631321 MOAP1Q96BY2 351 aa12.03□□□□□ -0.48
LINC00540-203ENST00000631321 MSLNLQ96KJ4 702 aa12.03□□□□□ -0.48
LINC00540-203ENST00000631321 INSM2Q96T92 566 aaPredicted RBP12.03□□□□□ -0.48
LINC00540-203ENST00000631321 SRRQ9GZT4 340 aa12.03□□□□□ -0.48
LINC00540-203ENST00000631321 SNTG1Q9NSN8 517 aa12.03□□□□□ -0.48
LINC00540-203ENST00000631321 CXXC1Q9P0U4 656 aaPredicted RBP12.03□□□□□ -0.48
LINC00540-203ENST00000631321 ASB4Q9Y574 426 aa12.03□□□□□ -0.48
LINC00540-203ENST00000631321 A0A0G2JN53 185 aa12.02□□□□□ -0.48
LINC00540-203ENST00000631321 TMEM129A0AVI4 362 aa12.02□□□□□ -0.48
LINC00540-203ENST00000631321 IRGMA1A4Y4 181 aa12.02□□□□□ -0.48
LINC00540-203ENST00000631321 SSX4O60224 188 aa12.02□□□□□ -0.48
LINC00540-203ENST00000631321 PKLRP30613 574 aa12.02□□□□□ -0.48
LINC00540-203ENST00000631321 DRD3P35462 400 aa12.02□□□□□ -0.48
LINC00540-203ENST00000631321 BCL6P41182 706 aa12.02□□□□□ -0.48
LINC00540-203ENST00000631321 RAB28P51157 221 aa12.02□□□□□ -0.48
LINC00540-203ENST00000631321 HYAL2Q12891 473 aa12.02□□□□□ -0.48
LINC00540-203ENST00000631321 SLC9A5Q14940 896 aa12.02□□□□□ -0.48
LINC00540-203ENST00000631321 GPR19Q15760 415 aa12.02□□□□□ -0.48
LINC00540-203ENST00000631321 ZNF79Q15937 498 aa12.02□□□□□ -0.48
LINC00540-203ENST00000631321 FLYWCH1Q4VC44 716 aa12.02□□□□□ -0.48
LINC00540-203ENST00000631321 FAM78AQ5JUQ0 283 aa12.02□□□□□ -0.48
LINC00540-203ENST00000631321 TMEM53Q6P2H8 277 aa12.02□□□□□ -0.48
LINC00540-203ENST00000631321 USP30Q70CQ3 517 aa12.02□□□□□ -0.48
LINC00540-203ENST00000631321 SPATC1Q76KD6 591 aa12.02□□□□□ -0.48
LINC00540-203ENST00000631321 KIF18BQ86Y91 864 aa12.02□□□□□ -0.48
LINC00540-203ENST00000631321 UBQLNLQ8IYU4 475 aa12.02□□□□□ -0.48
LINC00540-203ENST00000631321 NR4A3Q92570 626 aa12.02□□□□□ -0.48
LINC00540-203ENST00000631321 CAMK1GQ96NX5 476 aa12.02□□□□□ -0.48
LINC00540-203ENST00000631321 FERD3LQ96RJ6 166 aa12.02□□□□□ -0.48
LINC00540-203ENST00000631321 BBS4Q96RK4 519 aa12.02□□□□□ -0.48
LINC00540-203ENST00000631321 MED18Q9BUE0 208 aa12.02□□□□□ -0.48
LINC00540-203ENST00000631321 MCOLN1Q9GZU1 580 aa12.02□□□□□ -0.48
LINC00540-203ENST00000631321 KLHL31Q9H511 634 aa12.02□□□□□ -0.48
LINC00540-203ENST00000631321 TMEM165Q9HC07 324 aa12.02□□□□□ -0.48
LINC00540-203ENST00000631321 TXNL4BQ9NX01 149 aaKnown RBP12.02□□□□□ -0.48
LINC00540-203ENST00000631321 THAP10Q9P2Z0 257 aaPredicted RBP12.02□□□□□ -0.48
LINC00540-203ENST00000631321 MUTYHQ9UIF7 546 aa12.02□□□□□ -0.48
LINC00540-203ENST00000631321 CMAHPQ9Y471 501 aa12.02□□□□□ -0.48
LINC00540-203ENST00000631321 LAMA2P24043 3122 aaKnown RBP12.02□□□□□ -0.49
LINC00540-203ENST00000631321 WASHC1A8K0Z3 465 aa12.02□□□□□ -0.49
LINC00540-203ENST00000631321 GSTT2P0CG29 244 aa12.02□□□□□ -0.49
LINC00540-203ENST00000631321 GSTT2BP0CG30 244 aa12.02□□□□□ -0.49
LINC00540-203ENST00000631321 ACP2P11117 423 aa12.02□□□□□ -0.49
LINC00540-203ENST00000631321 TRIM23P36406 574 aa12.02□□□□□ -0.49
LINC00540-203ENST00000631321 LSM11P83369 360 aaKnown RBP eCLIP12.02□□□□□ -0.49
LINC00540-203ENST00000631321 RUNX1T1Q06455 604 aa12.02□□□□□ -0.49
LINC00540-203ENST00000631321 RAB40BQ12829 278 aa12.02□□□□□ -0.49
LINC00540-203ENST00000631321 GPR50Q13585 617 aa12.02□□□□□ -0.49
LINC00540-203ENST00000631321 DUSP6Q16828 381 aa12.02□□□□□ -0.49
LINC00540-203ENST00000631321 WASH2PQ6VEQ5 465 aa12.02□□□□□ -0.49
LINC00540-203ENST00000631321 OLIG3Q7RTU3 272 aa12.02□□□□□ -0.49
LINC00540-203ENST00000631321 SZRD1Q7Z422 152 aa12.02□□□□□ -0.49
LINC00540-203ENST00000631321 LAX1Q8IWV1 398 aa12.02□□□□□ -0.49
LINC00540-203ENST00000631321 OR8H2Q8N162 312 aa12.02□□□□□ -0.49
LINC00540-203ENST00000631321 OR56A1Q8NGH5 318 aa12.02□□□□□ -0.49
LINC00540-203ENST00000631321 OR2L8Q8NGY9 312 aa12.02□□□□□ -0.49
LINC00540-203ENST00000631321 TMEM163Q8TC26 289 aa12.02□□□□□ -0.49
LINC00540-203ENST00000631321 MS4A6EQ96DS6 147 aa12.02□□□□□ -0.49
LINC00540-203ENST00000631321 PAWRQ96IZ0 340 aaKnown RBP12.02□□□□□ -0.49
LINC00540-203ENST00000631321 NELL2Q99435 816 aa12.02□□□□□ -0.49
LINC00540-203ENST00000631321 A0A1W2PR48 441 aa12.01□□□□□ -0.49
LINC00540-203ENST00000631321 C4orf51C9J302 202 aa12.01□□□□□ -0.49
LINC00540-203ENST00000631321 PLD2O14939 933 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms