RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 MYLK4Q86YV6 388 aaPredicted RBP7.21□□□□□ -1.26
CLK1-215ENST00000621181 FBXW8Q8N3Y1 598 aa7.21□□□□□ -1.26
CLK1-215ENST00000621181 LIX1Q8N485 282 aa7.21□□□□□ -1.26
CLK1-215ENST00000621181 ZNF321PQ8N8H1 164 aa7.21□□□□□ -1.26
CLK1-215ENST00000621181 RELL2Q8NC24 303 aaPredicted RBP7.21□□□□□ -1.26
CLK1-215ENST00000621181 RBM15BQ8NDT2 890 aaKnown RBP7.21□□□□□ -1.26
CLK1-215ENST00000621181 OR8K3Q8NH51 312 aa7.21□□□□□ -1.26
CLK1-215ENST00000621181 SLC2A12Q8TD20 617 aa7.21□□□□□ -1.26
CLK1-215ENST00000621181 PTPMT1Q8WUK0 201 aaPredicted RBP7.21□□□□□ -1.26
CLK1-215ENST00000621181 RNASE6Q93091 150 aaKnown RBP7.21□□□□□ -1.26
CLK1-215ENST00000621181 JSRP1Q96MG2 331 aaPredicted RBP7.21□□□□□ -1.26
CLK1-215ENST00000621181 CSF3RQ99062 836 aa7.21□□□□□ -1.26
CLK1-215ENST00000621181 SORT1Q99523 831 aa7.21□□□□□ -1.26
CLK1-215ENST00000621181 SIKE1Q9BRV8 207 aa7.21□□□□□ -1.26
CLK1-215ENST00000621181 C1orf21Q9H246 121 aa7.21□□□□□ -1.26
CLK1-215ENST00000621181 PRM3Q9NNZ6 103 aa7.21□□□□□ -1.26
CLK1-215ENST00000621181 SEMA4BQ9NPR2 832 aaPredicted RBP7.21□□□□□ -1.26
CLK1-215ENST00000621181 NMRK1Q9NWW6 199 aa7.21□□□□□ -1.26
CLK1-215ENST00000621181 SPRR3Q9UBC9 169 aa7.21□□□□□ -1.26
CLK1-215ENST00000621181 STOML1Q9UBI4 398 aa7.21□□□□□ -1.26
CLK1-215ENST00000621181 VTI1BQ9UEU0 232 aa7.21□□□□□ -1.26
CLK1-215ENST00000621181 TAGLN3Q9UI15 199 aa7.21□□□□□ -1.26
CLK1-215ENST00000621181 FOXD3Q9UJU5 478 aaPredicted RBP7.21□□□□□ -1.26
CLK1-215ENST00000621181 BOKQ9UMX3 212 aaPredicted RBP7.21□□□□□ -1.26
CLK1-215ENST00000621181 DAPP1Q9UN19 280 aa7.21□□□□□ -1.26
CLK1-215ENST00000621181 SEC23IPQ9Y6Y8 1000 aaKnown RBP7.21□□□□□ -1.26
CLK1-215ENST00000621181 CSPG4Q6UVK1 2322 aa7.21□□□□□ -1.26
CLK1-215ENST00000621181 ANKDD1BA6NHY2 528 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 B2RBV5 119 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 H0Y3Z8 333 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 CYR61O00622 381 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 ZNF354AO60765 605 aaPredicted RBP7.2□□□□□ -1.26
CLK1-215ENST00000621181 CTNSO60931 367 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 LDB3O75112 727 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 WDR47O94967 919 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 IL2RAP01589 272 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 LINGO3P0C6S8 592 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 C1GALT1C1LP0DN25 315 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 COX7A2P14406 83 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 CERS1P27544 350 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 PGM1P36871 562 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 VHLP40337 213 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 MTTPP55157 894 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 LIM2P55344 173 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 BTKQ06187 659 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 SLC34A1Q06495 639 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 ASPHQ12797 758 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 STX3Q13277 289 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 SERTAD2Q14140 314 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 SLBPQ14493 270 aaKnown RBP eCLIP7.2□□□□□ -1.26
CLK1-215ENST00000621181 PCLAFQ15004 111 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 TBCCQ15814 346 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 PPP1R3AQ16821 1122 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 PRAMEF20Q5VT98 475 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 FRA10AC1Q70Z53 315 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 NET1Q7Z628 596 aaPredicted RBP7.2□□□□□ -1.26
CLK1-215ENST00000621181 ULK2Q8IYT8 1036 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 KRT78Q8N1N4 520 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 OR2L5Q8NG80 312 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 NEIL3Q8TAT5 605 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 DNAJC9Q8WXX5 260 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 SERINC2Q96SA4 455 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 EBF4Q9BQW3 602 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 IQCGQ9H095 443 aaKnown RBP7.2□□□□□ -1.26
CLK1-215ENST00000621181 ZNF703Q9H7S9 590 aaPredicted RBP7.2□□□□□ -1.26
CLK1-215ENST00000621181 NEUROD4Q9HD90 331 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 VWA7Q9Y334 891 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 PCDHGB3Q9Y5G1 929 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 FBN3Q75N90 2809 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 FN1P02751 2386 aaKnown RBP7.2□□□□□ -1.26
CLK1-215ENST00000621181 ARID1AO14497 2285 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 C15orf38-AP3S2A0A0A6YYH1 394 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 GLRA3O75311 464 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 CLEC3AO75596 197 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 ATE1O95260 518 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 SERPINE1P05121 402 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 RFPL3SP0C7P2 107 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 EPXP11678 715 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 ZNF37AP17032 561 aaPredicted RBP7.2□□□□□ -1.26
CLK1-215ENST00000621181 PAX7P23759 505 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 GSTM2P28161 218 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 HOXC12P31275 282 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 GDF5P43026 501 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 TRPC1P48995 793 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 HNMTP50135 292 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 ACTR3P61158 418 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 TGM3Q08188 693 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 TBL3Q12788 808 aaKnown RBP7.2□□□□□ -1.26
CLK1-215ENST00000621181 DAZAP2Q15038 168 aaPredicted RBP7.2□□□□□ -1.26
CLK1-215ENST00000621181 MPEG1Q2M385 716 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 FAM45BPQ6NSW5 357 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 PGM2L1Q6PCE3 622 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 ZCCHC23Q6ZST2 131 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 SEM1Q6ZVN7 128 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 KIF18BQ86Y91 864 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 CNTN4Q8IWV2 1026 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 NAXEQ8NCW5 288 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 TNIP2Q8NFZ5 429 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 SLC22A8Q8TCC7 542 aa7.2□□□□□ -1.26
CLK1-215ENST00000621181 FAM45AQ8TCE6 357 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms