RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 WDR41Q9HAD4 459 aa11.84□□□□□ -0.51
UPF1-208ENST00000600012 ZNF304Q9HCX3 659 aa11.84□□□□□ -0.51
UPF1-208ENST00000600012 SLAMF8Q9P0V8 285 aa11.84□□□□□ -0.51
UPF1-208ENST00000600012 HCN3Q9P1Z3 774 aa11.84□□□□□ -0.51
UPF1-208ENST00000600012 ZNF282Q9UDV7 671 aaPredicted RBP11.84□□□□□ -0.51
UPF1-208ENST00000600012 PHF11Q9UIL8 331 aa11.84□□□□□ -0.51
UPF1-208ENST00000600012 ENTPD4Q9Y227 616 aa11.84□□□□□ -0.51
UPF1-208ENST00000600012 PCDHA9Q9Y5H5 950 aa11.84□□□□□ -0.51
UPF1-208ENST00000600012 MAU2Q9Y6X3 613 aa11.84□□□□□ -0.51
UPF1-208ENST00000600012 CPAMD8Q8IZJ3 1885 aa11.83□□□□□ -0.52
UPF1-208ENST00000600012 WASHC1A8K0Z3 465 aa11.83□□□□□ -0.52
UPF1-208ENST00000600012 FXYD1O00168 92 aa11.83□□□□□ -0.52
UPF1-208ENST00000600012 PGRMC2O15173 223 aa11.83□□□□□ -0.52
UPF1-208ENST00000600012 GSC2O15499 205 aa11.83□□□□□ -0.52
UPF1-208ENST00000600012 ZG16O60844 167 aa11.83□□□□□ -0.52
UPF1-208ENST00000600012 SCN2BO60939 215 aa11.83□□□□□ -0.52
UPF1-208ENST00000600012 GUCY1B2O75343 617 aa11.83□□□□□ -0.52
UPF1-208ENST00000600012 KRT16P08779 473 aa11.83□□□□□ -0.52
UPF1-208ENST00000600012 STSP08842 583 aa11.83□□□□□ -0.52
UPF1-208ENST00000600012 ZGLP1P0C6A0 271 aa11.83□□□□□ -0.52
UPF1-208ENST00000600012 CDKN2CP42773 168 aa11.83□□□□□ -0.52
UPF1-208ENST00000600012 PSME3P61289 254 aa11.83□□□□□ -0.52
UPF1-208ENST00000600012 MAT1AQ00266 395 aaKnown RBP11.83□□□□□ -0.52
UPF1-208ENST00000600012 ACTN3Q08043 901 aaPredicted RBP11.83□□□□□ -0.52
UPF1-208ENST00000600012 DMTNQ08495 405 aa11.83□□□□□ -0.52
UPF1-208ENST00000600012 TRMT5Q32P41 509 aaKnown RBP11.83□□□□□ -0.52
UPF1-208ENST00000600012 GTDC1Q4AE62 458 aa11.83□□□□□ -0.52
UPF1-208ENST00000600012 DNAL1Q4LDG9 190 aa11.83□□□□□ -0.52
UPF1-208ENST00000600012 HACD2Q6Y1H2 254 aa11.83□□□□□ -0.52
UPF1-208ENST00000600012 MSANTD1Q6ZTZ1 278 aa11.83□□□□□ -0.52
UPF1-208ENST00000600012 PGAM4Q8N0Y7 254 aa11.83□□□□□ -0.52
UPF1-208ENST00000600012 GTF2H4Q92759 462 aa11.83□□□□□ -0.52
UPF1-208ENST00000600012 UTP4Q969X6 686 aaKnown RBP11.83□□□□□ -0.52
UPF1-208ENST00000600012 MARVELD3Q96A59 401 aa11.83□□□□□ -0.52
UPF1-208ENST00000600012 EXOSC8Q96B26 276 aaKnown RBP11.83□□□□□ -0.52
UPF1-208ENST00000600012 ROPN1LQ96C74 230 aa11.83□□□□□ -0.52
UPF1-208ENST00000600012 PRPF18Q99633 342 aaKnown RBP11.83□□□□□ -0.52
UPF1-208ENST00000600012 RBCK1Q9BYM8 510 aa11.83□□□□□ -0.52
UPF1-208ENST00000600012 TRIM8Q9BZR9 551 aa11.83□□□□□ -0.52
UPF1-208ENST00000600012 BHLHE41Q9C0J9 482 aaPredicted RBP11.83□□□□□ -0.52
UPF1-208ENST00000600012 C1orf21Q9H246 121 aa11.83□□□□□ -0.52
UPF1-208ENST00000600012 RMND5AQ9H871 391 aa11.83□□□□□ -0.52
UPF1-208ENST00000600012 ZNF160Q9HCG1 818 aa11.83□□□□□ -0.52
UPF1-208ENST00000600012 SERHLQ9NQF3 203 aa11.83□□□□□ -0.52
UPF1-208ENST00000600012 OLAHQ9NV23 265 aa11.83□□□□□ -0.52
UPF1-208ENST00000600012 ATAD3AQ9NVI7 634 aa11.83□□□□□ -0.52
UPF1-208ENST00000600012 FAM120CQ9NX05 1096 aaKnown RBP11.83□□□□□ -0.52
UPF1-208ENST00000600012 KCMF1Q9P0J7 381 aa11.83□□□□□ -0.52
UPF1-208ENST00000600012 C3orf18Q9UK00 162 aa11.83□□□□□ -0.52
UPF1-208ENST00000600012 PACSIN3Q9UKS6 424 aa11.83□□□□□ -0.52
UPF1-208ENST00000600012 DAPP1Q9UN19 280 aa11.83□□□□□ -0.52
UPF1-208ENST00000600012 WBP11Q9Y2W2 641 aaKnown RBP11.83□□□□□ -0.52
UPF1-208ENST00000600012 LRBAP50851 2863 aa11.82□□□□□ -0.52
UPF1-208ENST00000600012 IGLV3-12A0A075B6K2 115 aa11.82□□□□□ -0.52
UPF1-208ENST00000600012 C1orf226A1L170 272 aa11.82□□□□□ -0.52
UPF1-208ENST00000600012 PROM1O43490 865 aa11.82□□□□□ -0.52
UPF1-208ENST00000600012 CHST10O43529 356 aa11.82□□□□□ -0.52
UPF1-208ENST00000600012 TBX19O60806 448 aa11.82□□□□□ -0.52
UPF1-208ENST00000600012 JRKO75564 520 aa11.82□□□□□ -0.52
UPF1-208ENST00000600012 KCNH1O95259 989 aa11.82□□□□□ -0.52
UPF1-208ENST00000600012 NSA2O95478 260 aaKnown RBP11.82□□□□□ -0.52
UPF1-208ENST00000600012 CPSF4O95639 269 aaKnown RBP11.82□□□□□ -0.52
UPF1-208ENST00000600012 C6orf47O95873 294 aa11.82□□□□□ -0.52
UPF1-208ENST00000600012 GSNP06396 782 aa11.82□□□□□ -0.52
UPF1-208ENST00000600012 DRD2P14416 443 aa11.82□□□□□ -0.52
UPF1-208ENST00000600012 NQO1P15559 274 aaKnown RBP11.82□□□□□ -0.52
UPF1-208ENST00000600012 FBLP22087 321 aaKnown RBP11.82□□□□□ -0.52
UPF1-208ENST00000600012 AVPR1BP47901 424 aa11.82□□□□□ -0.52
UPF1-208ENST00000600012 HNRNPFP52597 415 aaKnown RBP11.82□□□□□ -0.52
UPF1-208ENST00000600012 EMP3P54852 163 aa11.82□□□□□ -0.52
UPF1-208ENST00000600012 RAB38P57729 211 aa11.82□□□□□ -0.52
UPF1-208ENST00000600012 ARG2P78540 354 aa11.82□□□□□ -0.52
UPF1-208ENST00000600012 FAM53BQ14153 422 aa11.82□□□□□ -0.52
UPF1-208ENST00000600012 INAQ16352 499 aa11.82□□□□□ -0.52
UPF1-208ENST00000600012 SYT16Q17RD7 645 aa11.82□□□□□ -0.52
UPF1-208ENST00000600012 C8orf82Q6P1X6 216 aaPredicted RBP11.82□□□□□ -0.52
UPF1-208ENST00000600012 KBTBD2Q8IY47 623 aa11.82□□□□□ -0.52
UPF1-208ENST00000600012 PRSS58Q8IYP2 241 aa11.82□□□□□ -0.52
UPF1-208ENST00000600012 DPP10Q8N608 796 aa11.82□□□□□ -0.52
UPF1-208ENST00000600012 TMEM52Q8NDY8 209 aa11.82□□□□□ -0.52
UPF1-208ENST00000600012 CATSPER1Q8NEC5 780 aa11.82□□□□□ -0.52
UPF1-208ENST00000600012 OR1N1Q8NGS0 311 aa11.82□□□□□ -0.52
UPF1-208ENST00000600012 LRRC58Q96CX6 371 aa11.82□□□□□ -0.52
UPF1-208ENST00000600012 MMABQ96EY8 250 aaPredicted RBP11.82□□□□□ -0.52
UPF1-208ENST00000600012 ITCHQ96J02 903 aa11.82□□□□□ -0.52
UPF1-208ENST00000600012 CLPTM1LQ96KA5 538 aa11.82□□□□□ -0.52
UPF1-208ENST00000600012 THTPAQ9BU02 230 aa11.82□□□□□ -0.52
UPF1-208ENST00000600012 NPLQ9BXD5 320 aaPredicted RBP11.82□□□□□ -0.52
UPF1-208ENST00000600012 PAIP1Q9H074 479 aaKnown RBP11.82□□□□□ -0.52
UPF1-208ENST00000600012 LYRM4Q9HD34 91 aa11.82□□□□□ -0.52
UPF1-208ENST00000600012 SLC6A13Q9NSD5 602 aa11.82□□□□□ -0.52
UPF1-208ENST00000600012 GID8Q9NWU2 228 aa11.82□□□□□ -0.52
UPF1-208ENST00000600012 NDE1Q9NXR1 346 aa11.82□□□□□ -0.52
UPF1-208ENST00000600012 A0A096LPI6 279 aa11.81□□□□□ -0.52
UPF1-208ENST00000600012 NSG1A0A0A6YYJ2 146 aa11.81□□□□□ -0.52
UPF1-208ENST00000600012 TRAV17A0A0B4J275 112 aa11.81□□□□□ -0.52
UPF1-208ENST00000600012 PRSS51A0A1B0GVH4 220 aa11.81□□□□□ -0.52
UPF1-208ENST00000600012 A0A1W2PS29 197 aa11.81□□□□□ -0.52
UPF1-208ENST00000600012 FAM227AF5H4B4 570 aa11.81□□□□□ -0.52
UPF1-208ENST00000600012 PDPK1O15530 556 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms