RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 B4GALT7Q9UBV7 327 aa17.24■□□□□ 0.35
PNKP-213ENST00000599543 FAM215AQ9Y5M1 114 aa17.24■□□□□ 0.35
PNKP-213ENST00000599543 CHCHD2Q9Y6H1 151 aaPredicted RBP17.24■□□□□ 0.35
PNKP-213ENST00000599543 HIVEP1P15822 2718 aa17.23■□□□□ 0.35
PNKP-213ENST00000599543 CTIFO43310 598 aaKnown RBP17.23■□□□□ 0.35
PNKP-213ENST00000599543 PIK3R1P27986 724 aa17.23■□□□□ 0.35
PNKP-213ENST00000599543 C10orf62Q5T681 223 aaPredicted RBP17.23■□□□□ 0.35
PNKP-213ENST00000599543 C6orf163Q5TEZ5 329 aa17.23■□□□□ 0.35
PNKP-213ENST00000599543 FRG2Q64ET8 278 aa17.23■□□□□ 0.35
PNKP-213ENST00000599543 LRIG3Q6UXM1 1119 aa17.23■□□□□ 0.35
PNKP-213ENST00000599543 CDH24Q86UP0 819 aa17.23■□□□□ 0.35
PNKP-213ENST00000599543 EXOC3L1Q86VI1 746 aa17.23■□□□□ 0.35
PNKP-213ENST00000599543 GALNT12Q8IXK2 581 aa17.23■□□□□ 0.35
PNKP-213ENST00000599543 CDYL2Q8N8U2 506 aa17.23■□□□□ 0.35
PNKP-213ENST00000599543 L3HYPDHQ96EM0 354 aa17.23■□□□□ 0.35
PNKP-213ENST00000599543 FRG2BQ96QU4 278 aa17.23■□□□□ 0.35
PNKP-213ENST00000599543 KCNA7Q96RP8 456 aa17.23■□□□□ 0.35
PNKP-213ENST00000599543 HBEGFQ99075 208 aa17.23■□□□□ 0.35
PNKP-213ENST00000599543 DOHHQ9BU89 302 aa17.23■□□□□ 0.35
PNKP-213ENST00000599543 NTMT1Q9BV86 223 aa17.23■□□□□ 0.35
PNKP-213ENST00000599543 MKS1Q9NXB0 559 aa17.23■□□□□ 0.35
PNKP-213ENST00000599543 ALKBH4Q9NXW9 302 aa17.23■□□□□ 0.35
PNKP-213ENST00000599543 C2orf92A0A1B0GVN3 265 aa17.22■□□□□ 0.35
PNKP-213ENST00000599543 UBFD1O14562 309 aaKnown RBP17.22■□□□□ 0.35
PNKP-213ENST00000599543 LRATO95237 230 aa17.22■□□□□ 0.35
PNKP-213ENST00000599543 OTCP00480 354 aa17.22■□□□□ 0.35
PNKP-213ENST00000599543 RFPL3SP0C7P2 107 aa17.22■□□□□ 0.35
PNKP-213ENST00000599543 GLI4P10075 376 aa17.22■□□□□ 0.35
PNKP-213ENST00000599543 ALDH3A1P30838 453 aa17.22■□□□□ 0.35
PNKP-213ENST00000599543 SSTR4P31391 388 aa17.22■□□□□ 0.35
PNKP-213ENST00000599543 ZFP36L2P47974 494 aaKnown RBP17.22■□□□□ 0.35
PNKP-213ENST00000599543 IFT88Q13099 833 aa17.22■□□□□ 0.35
PNKP-213ENST00000599543 CASP8Q14790 479 aa17.22■□□□□ 0.35
PNKP-213ENST00000599543 NTRK2Q16620 822 aa17.22■□□□□ 0.35
PNKP-213ENST00000599543 C1orf185Q5T7R7 199 aa17.22■□□□□ 0.35
PNKP-213ENST00000599543 HLA-DQA1Q5Y7H0 255 aa17.22■□□□□ 0.35
PNKP-213ENST00000599543 PAGE2Q7Z2X7 111 aa17.22■□□□□ 0.35
PNKP-213ENST00000599543 CNPY4Q8N129 248 aa17.22■□□□□ 0.35
PNKP-213ENST00000599543 LRRC25Q8N386 305 aaPredicted RBP17.22■□□□□ 0.35
PNKP-213ENST00000599543 LIX1Q8N485 282 aa17.22■□□□□ 0.35
PNKP-213ENST00000599543 MYRIPQ8NFW9 859 aa17.22■□□□□ 0.35
PNKP-213ENST00000599543 CXorf21Q9HAI6 301 aa17.22■□□□□ 0.35
PNKP-213ENST00000599543 TEX10Q9NXF1 929 aaPredicted RBP17.22■□□□□ 0.35
PNKP-213ENST00000599543 AHSPQ9NZD4 102 aa17.22■□□□□ 0.35
PNKP-213ENST00000599543 SPRR3Q9UBC9 169 aa17.22■□□□□ 0.35
PNKP-213ENST00000599543 ANKHD1Q8IWZ3 2542 aaKnown RBP17.22■□□□□ 0.35
PNKP-213ENST00000599543 C2CD3Q4AC94 2353 aa17.21■□□□□ 0.35
PNKP-213ENST00000599543 LRRC3CA6NJW4 275 aa17.21■□□□□ 0.35
PNKP-213ENST00000599543 CAPN14A8MX76 684 aa17.21■□□□□ 0.35
PNKP-213ENST00000599543 TP53I11O14683 189 aa17.21■□□□□ 0.35
PNKP-213ENST00000599543 PGRMC2O15173 223 aa17.21■□□□□ 0.35
PNKP-213ENST00000599543 TYROBPO43914 113 aa17.21■□□□□ 0.35
PNKP-213ENST00000599543 CLPSP04118 112 aa17.21■□□□□ 0.35
PNKP-213ENST00000599543 KLK1P06870 262 aa17.21■□□□□ 0.35
PNKP-213ENST00000599543 GABRA1P14867 456 aa17.21■□□□□ 0.35
PNKP-213ENST00000599543 ENDOUP21128 410 aaKnown RBP17.21■□□□□ 0.35
PNKP-213ENST00000599543 HTR6P50406 440 aa17.21■□□□□ 0.35
PNKP-213ENST00000599543 RPS6KA2Q15349 733 aa17.21■□□□□ 0.35
PNKP-213ENST00000599543 TBCELQ5QJ74 424 aa17.21■□□□□ 0.35
PNKP-213ENST00000599543 RTL6Q6ICC9 239 aa17.21■□□□□ 0.35
PNKP-213ENST00000599543 SCIMPQ6UWF3 145 aa17.21■□□□□ 0.35
PNKP-213ENST00000599543 ZCCHC23Q6ZST2 131 aa17.21■□□□□ 0.35
PNKP-213ENST00000599543 GPRIN3Q6ZVF9 776 aa17.21■□□□□ 0.35
PNKP-213ENST00000599543 DMRTC2Q8IXT2 367 aaPredicted RBP17.21■□□□□ 0.35
PNKP-213ENST00000599543 CLYBLQ8N0X4 340 aa17.21■□□□□ 0.35
PNKP-213ENST00000599543 OR4K14Q8NGD5 310 aa17.21■□□□□ 0.35
PNKP-213ENST00000599543 RDH11Q8TC12 318 aa17.21■□□□□ 0.35
PNKP-213ENST00000599543 DIO2Q92813 273 aa17.21■□□□□ 0.35
PNKP-213ENST00000599543 UCN3Q969E3 161 aa17.21■□□□□ 0.35
PNKP-213ENST00000599543 PKNOX2Q96KN3 472 aa17.21■□□□□ 0.35
PNKP-213ENST00000599543 ZNF597Q96LX8 424 aa17.21■□□□□ 0.35
PNKP-213ENST00000599543 MRPL1Q9BYD6 325 aaKnown RBP17.21■□□□□ 0.35
PNKP-213ENST00000599543 ELOVL6Q9H5J4 265 aa17.21■□□□□ 0.35
PNKP-213ENST00000599543 TNFRSF12AQ9NP84 129 aa17.21■□□□□ 0.35
PNKP-213ENST00000599543 OXSMQ9NWU1 459 aa17.21■□□□□ 0.35
PNKP-213ENST00000599543 QPCTLQ9NXS2 382 aa17.21■□□□□ 0.35
PNKP-213ENST00000599543 ADAM29Q9UKF5 820 aa17.21■□□□□ 0.35
PNKP-213ENST00000599543 CNOT11Q9UKZ1 510 aaKnown RBP17.21■□□□□ 0.35
PNKP-213ENST00000599543 TIMM22Q9Y584 194 aa17.21■□□□□ 0.35
PNKP-213ENST00000599543 MED13LQ71F56 2210 aa17.2■□□□□ 0.34
PNKP-213ENST00000599543 A0A0G2JNJ9 132 aa17.2■□□□□ 0.34
PNKP-213ENST00000599543 A0A1W2PS29 197 aa17.2■□□□□ 0.34
PNKP-213ENST00000599543 FAM47E-STBD1D6RA91 191 aa17.2■□□□□ 0.34
PNKP-213ENST00000599543 HOXD4P09016 255 aaPredicted RBP17.2■□□□□ 0.34
PNKP-213ENST00000599543 GDF1P27539 372 aa17.2■□□□□ 0.34
PNKP-213ENST00000599543 TMED10P49755 219 aaKnown RBP17.2■□□□□ 0.34
PNKP-213ENST00000599543 NRG3P56975 720 aa17.2■□□□□ 0.34
PNKP-213ENST00000599543 GGTA1PQ4G0N0 100 aa17.2■□□□□ 0.34
PNKP-213ENST00000599543 CFAP157Q5JU67 520 aa17.2■□□□□ 0.34
PNKP-213ENST00000599543 CCNYL2Q5T2Q4 361 aa17.2■□□□□ 0.34
PNKP-213ENST00000599543 TMEM198Q66K66 360 aa17.2■□□□□ 0.34
PNKP-213ENST00000599543 ZNF441Q8N8Z8 693 aa17.2■□□□□ 0.34
PNKP-213ENST00000599543 NEIL3Q8TAT5 605 aa17.2■□□□□ 0.34
PNKP-213ENST00000599543 TP53INP1Q96A56 240 aa17.2■□□□□ 0.34
PNKP-213ENST00000599543 CCDC126Q96EE4 140 aa17.2■□□□□ 0.34
PNKP-213ENST00000599543 ZNF382Q96SR6 550 aa17.2■□□□□ 0.34
PNKP-213ENST00000599543 ZNF559Q9BR84 538 aa17.2■□□□□ 0.34
PNKP-213ENST00000599543 GATA5Q9BWX5 397 aaPredicted RBP17.2■□□□□ 0.34
PNKP-213ENST00000599543 SLC6A15Q9H2J7 730 aa17.2■□□□□ 0.34
PNKP-213ENST00000599543 PROK2Q9HC23 129 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms