RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 MILR1Q7Z6M3 343 aa9.18□□□□□ -0.94
TRIM28-210ENST00000597618 TRIM42Q8IWZ5 723 aa9.18□□□□□ -0.94
TRIM28-210ENST00000597618 ZCCHC7Q8N3Z6 543 aaKnown RBP9.18□□□□□ -0.94
TRIM28-210ENST00000597618 MAPK1IP1LQ8NDC0 245 aa9.18□□□□□ -0.94
TRIM28-210ENST00000597618 CMTM7Q96FZ5 175 aa9.18□□□□□ -0.94
TRIM28-210ENST00000597618 ZC3HAV1LQ96H79 300 aaKnown RBP9.18□□□□□ -0.94
TRIM28-210ENST00000597618 CENPKQ9BS16 269 aa9.18□□□□□ -0.94
TRIM28-210ENST00000597618 REG4Q9BYZ8 158 aa9.18□□□□□ -0.94
TRIM28-210ENST00000597618 OPN3Q9H1Y3 402 aaPredicted RBP9.18□□□□□ -0.94
TRIM28-210ENST00000597618 SERHLQ9NQF3 203 aa9.18□□□□□ -0.94
TRIM28-210ENST00000597618 YAE1D1Q9NRH1 226 aa9.18□□□□□ -0.94
TRIM28-210ENST00000597618 PSD3Q9NYI0 1048 aa9.18□□□□□ -0.94
TRIM28-210ENST00000597618 TAS2R10Q9NYW0 307 aa9.18□□□□□ -0.94
TRIM28-210ENST00000597618 KLRF1Q9NZS2 232 aa9.18□□□□□ -0.94
TRIM28-210ENST00000597618 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP9.17□□□□□ -0.94
TRIM28-210ENST00000597618 LRRC14BA6NHZ5 514 aa9.17□□□□□ -0.94
TRIM28-210ENST00000597618 SLC22A20A6NK97 555 aa9.17□□□□□ -0.94
TRIM28-210ENST00000597618 TAPBPO15533 448 aa9.17□□□□□ -0.94
TRIM28-210ENST00000597618 SH3BGRLO75368 114 aa9.17□□□□□ -0.94
TRIM28-210ENST00000597618 PRKRAO75569 313 aaKnown RBP9.17□□□□□ -0.94
TRIM28-210ENST00000597618 PPM1BO75688 479 aa9.17□□□□□ -0.94
TRIM28-210ENST00000597618 STK16O75716 305 aa9.17□□□□□ -0.94
TRIM28-210ENST00000597618 TGM6O95932 706 aa9.17□□□□□ -0.94
TRIM28-210ENST00000597618 TGFB1P01137 390 aa9.17□□□□□ -0.94
TRIM28-210ENST00000597618 ABCB1P08183 1280 aaPredicted RBP9.17□□□□□ -0.94
TRIM28-210ENST00000597618 NR2F6P10588 404 aa9.17□□□□□ -0.94
TRIM28-210ENST00000597618 PCNAP12004 261 aa9.17□□□□□ -0.94
TRIM28-210ENST00000597618 ZNF708P17019 499 aa9.17□□□□□ -0.94
TRIM28-210ENST00000597618 NAGAP17050 411 aa9.17□□□□□ -0.94
TRIM28-210ENST00000597618 HSPA7P48741 367 aa9.17□□□□□ -0.94
TRIM28-210ENST00000597618 HNRNPH2P55795 449 aaKnown RBP9.17□□□□□ -0.94
TRIM28-210ENST00000597618 CHIT1Q13231 466 aa9.17□□□□□ -0.94
TRIM28-210ENST00000597618 FGFBP1Q14512 234 aa9.17□□□□□ -0.94
TRIM28-210ENST00000597618 ZNF460Q14592 562 aa9.17□□□□□ -0.94
TRIM28-210ENST00000597618 CDKL4Q5MAI5 379 aa9.17□□□□□ -0.94
TRIM28-210ENST00000597618 C10orf62Q5T681 223 aaPredicted RBP9.17□□□□□ -0.94
TRIM28-210ENST00000597618 SULT1C3Q6IMI6 304 aa9.17□□□□□ -0.94
TRIM28-210ENST00000597618 MED27Q6P2C8 311 aa9.17□□□□□ -0.94
TRIM28-210ENST00000597618 SH2D5Q6ZV89 423 aa9.17□□□□□ -0.94
TRIM28-210ENST00000597618 CHMP1BQ7LBR1 199 aa9.17□□□□□ -0.94
TRIM28-210ENST00000597618 BTLAQ7Z6A9 289 aa9.17□□□□□ -0.94
TRIM28-210ENST00000597618 GALNT12Q8IXK2 581 aa9.17□□□□□ -0.94
TRIM28-210ENST00000597618 LAS2Q8IYD9 372 aa9.17□□□□□ -0.94
TRIM28-210ENST00000597618 PRR22Q8IZ63 422 aa9.17□□□□□ -0.94
TRIM28-210ENST00000597618 ZNF611Q8N823 705 aa9.17□□□□□ -0.94
TRIM28-210ENST00000597618 ANKRD49Q8WVL7 239 aa9.17□□□□□ -0.94
TRIM28-210ENST00000597618 ADIPOR1Q96A54 375 aa9.17□□□□□ -0.94
TRIM28-210ENST00000597618 MAGOHBQ96A72 148 aaKnown RBP9.17□□□□□ -0.94
TRIM28-210ENST00000597618 RGMAQ96B86 450 aa9.17□□□□□ -0.94
TRIM28-210ENST00000597618 PGM2Q96G03 612 aa9.17□□□□□ -0.94
TRIM28-210ENST00000597618 ZNF845Q96IR2 970 aaPredicted RBP9.17□□□□□ -0.94
TRIM28-210ENST00000597618 SFXN2Q96NB2 322 aa9.17□□□□□ -0.94
TRIM28-210ENST00000597618 SORBS1Q9BX66 1292 aaKnown RBP9.17□□□□□ -0.94
TRIM28-210ENST00000597618 WDR41Q9HAD4 459 aa9.17□□□□□ -0.94
TRIM28-210ENST00000597618 CXorf21Q9HAI6 301 aa9.17□□□□□ -0.94
TRIM28-210ENST00000597618 GALNT9Q9HCQ5 603 aa9.17□□□□□ -0.94
TRIM28-210ENST00000597618 LYARQ9NX58 379 aaKnown RBP9.17□□□□□ -0.94
TRIM28-210ENST00000597618 EXO1Q9UQ84 846 aaKnown RBP9.17□□□□□ -0.94
TRIM28-210ENST00000597618 A0A087X1B8 175 aa9.16□□□□□ -0.94
TRIM28-210ENST00000597618 FAM95CA0A1B0GW59 222 aa9.16□□□□□ -0.94
TRIM28-210ENST00000597618 HS3ST1O14792 307 aa9.16□□□□□ -0.94
TRIM28-210ENST00000597618 EMC8O43402 210 aa9.16□□□□□ -0.94
TRIM28-210ENST00000597618 ICOSLGO75144 302 aa9.16□□□□□ -0.94
TRIM28-210ENST00000597618 BANF1O75531 89 aa9.16□□□□□ -0.94
TRIM28-210ENST00000597618 FAM157CP0CG43 387 aa9.16□□□□□ -0.94
TRIM28-210ENST00000597618 CD8BP10966 210 aa9.16□□□□□ -0.94
TRIM28-210ENST00000597618 PPP3CBP16298 524 aa9.16□□□□□ -0.94
TRIM28-210ENST00000597618 SRD5A2P31213 254 aa9.16□□□□□ -0.94
TRIM28-210ENST00000597618 CXCR5P32302 372 aa9.16□□□□□ -0.94
TRIM28-210ENST00000597618 GMPRP36959 345 aa9.16□□□□□ -0.94
TRIM28-210ENST00000597618 STARP49675 285 aa9.16□□□□□ -0.94
TRIM28-210ENST00000597618 ARFIP1P53367 373 aa9.16□□□□□ -0.94
TRIM28-210ENST00000597618 CLDN18P56856 261 aa9.16□□□□□ -0.94
TRIM28-210ENST00000597618 RPS4XP62701 263 aaKnown RBP9.16□□□□□ -0.94
TRIM28-210ENST00000597618 E2F2Q14209 437 aa9.16□□□□□ -0.94
TRIM28-210ENST00000597618 FBXO48Q5FWF7 155 aa9.16□□□□□ -0.94
TRIM28-210ENST00000597618 DEPDC1Q5TB30 811 aa9.16□□□□□ -0.94
TRIM28-210ENST00000597618 RNASEH2BQ5TBB1 312 aaKnown RBP9.16□□□□□ -0.94
TRIM28-210ENST00000597618 C6orf163Q5TEZ5 329 aa9.16□□□□□ -0.94
TRIM28-210ENST00000597618 CCDC137Q6PK04 289 aaKnown RBP9.16□□□□□ -0.94
TRIM28-210ENST00000597618 LRRC70Q7Z2Q7 622 aa9.16□□□□□ -0.94
TRIM28-210ENST00000597618 NUP54Q7Z3B4 507 aa9.16□□□□□ -0.94
TRIM28-210ENST00000597618 GPSM1Q86YR5 675 aa9.16□□□□□ -0.94
TRIM28-210ENST00000597618 ZNF615Q8N8J6 731 aa9.16□□□□□ -0.94
TRIM28-210ENST00000597618 WDSUB1Q8N9V3 476 aa9.16□□□□□ -0.94
TRIM28-210ENST00000597618 OR7G3Q8NG95 312 aa9.16□□□□□ -0.94
TRIM28-210ENST00000597618 OR7G1Q8NGA0 311 aa9.16□□□□□ -0.94
TRIM28-210ENST00000597618 RDH11Q8TC12 318 aa9.16□□□□□ -0.94
TRIM28-210ENST00000597618 HGDQ93099 445 aa9.16□□□□□ -0.94
TRIM28-210ENST00000597618 DERL2Q9GZP9 239 aa9.16□□□□□ -0.94
TRIM28-210ENST00000597618 OR10A5Q9H207 317 aa9.16□□□□□ -0.94
TRIM28-210ENST00000597618 OR51B5Q9H339 312 aa9.16□□□□□ -0.94
TRIM28-210ENST00000597618 POPDC3Q9HBV1 291 aa9.16□□□□□ -0.94
TRIM28-210ENST00000597618 MED12LQ86YW9 2145 aa9.16□□□□□ -0.94
TRIM28-210ENST00000597618 PRAMEF25A6NGN4 478 aa9.15□□□□□ -0.94
TRIM28-210ENST00000597618 FRG2CA6NGY1 282 aa9.15□□□□□ -0.94
TRIM28-210ENST00000597618 GLOD5A6NK44 160 aa9.15□□□□□ -0.94
TRIM28-210ENST00000597618 A8MV72 311 aaPredicted RBP9.15□□□□□ -0.94
TRIM28-210ENST00000597618 PLPP1O14494 284 aa9.15□□□□□ -0.94
TRIM28-210ENST00000597618 CCNT2O60583 730 aaKnown RBP9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms