RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 PRB1P04280 392 aa13.96□□□□□ -0.18
TRIM28-207ENST00000597136 CPMP14384 443 aa13.96□□□□□ -0.18
TRIM28-207ENST00000597136 PORP16435 677 aaPredicted RBP13.96□□□□□ -0.18
TRIM28-207ENST00000597136 TNNI3P19429 210 aa13.96□□□□□ -0.18
TRIM28-207ENST00000597136 MPIP34949 423 aa13.96□□□□□ -0.18
TRIM28-207ENST00000597136 GPR143P51810 404 aa13.96□□□□□ -0.18
TRIM28-207ENST00000597136 MANFP55145 182 aaKnown RBP13.96□□□□□ -0.18
TRIM28-207ENST00000597136 LRRC74AQ0VAA2 488 aa13.96□□□□□ -0.18
TRIM28-207ENST00000597136 MLC1Q15049 377 aa13.96□□□□□ -0.18
TRIM28-207ENST00000597136 SOWAHCQ53LP3 525 aaPredicted RBP13.96□□□□□ -0.18
TRIM28-207ENST00000597136 B3GNTL1Q67FW5 361 aaPredicted RBP13.96□□□□□ -0.18
TRIM28-207ENST00000597136 FCRLBQ6BAA4 426 aa13.96□□□□□ -0.18
TRIM28-207ENST00000597136 ZNF551Q7Z340 670 aaPredicted RBP13.96□□□□□ -0.18
TRIM28-207ENST00000597136 CCDC116Q8IYX3 515 aa13.96□□□□□ -0.18
TRIM28-207ENST00000597136 PCYOX1LQ8NBM8 494 aa13.96□□□□□ -0.18
TRIM28-207ENST00000597136 SUN3Q8TAQ9 357 aa13.96□□□□□ -0.18
TRIM28-207ENST00000597136 WBP1Q96G27 269 aa13.96□□□□□ -0.18
TRIM28-207ENST00000597136 INPP5KQ9BT40 448 aa13.96□□□□□ -0.18
TRIM28-207ENST00000597136 ADNPQ9H2P0 1102 aa13.96□□□□□ -0.18
TRIM28-207ENST00000597136 GLIPR2Q9H4G4 154 aa13.96□□□□□ -0.18
TRIM28-207ENST00000597136 ADAP2Q9NPF8 381 aa13.96□□□□□ -0.18
TRIM28-207ENST00000597136 PTGFRNQ9P2B2 879 aa13.96□□□□□ -0.18
TRIM28-207ENST00000597136 SPENQ96T58 3664 aaKnown RBP13.95□□□□□ -0.18
TRIM28-207ENST00000597136 GTF3C1Q12789 2109 aa13.95□□□□□ -0.18
TRIM28-207ENST00000597136 A8MUI8 341 aa13.95□□□□□ -0.18
TRIM28-207ENST00000597136 MAN1A2O60476 641 aa13.95□□□□□ -0.18
TRIM28-207ENST00000597136 UNC5CO95185 931 aa13.95□□□□□ -0.18
TRIM28-207ENST00000597136 C6orf47O95873 294 aa13.95□□□□□ -0.18
TRIM28-207ENST00000597136 SLC35E2P0CK97 266 aa13.95□□□□□ -0.18
TRIM28-207ENST00000597136 STT3AP46977 705 aa13.95□□□□□ -0.18
TRIM28-207ENST00000597136 TRPC1P48995 793 aa13.95□□□□□ -0.18
TRIM28-207ENST00000597136 NCBP2P52298 156 aaKnown RBP eCLIP13.95□□□□□ -0.18
TRIM28-207ENST00000597136 HBA1P69905 142 aa13.95□□□□□ -0.18
TRIM28-207ENST00000597136 SERTAD2Q14140 314 aa13.95□□□□□ -0.18
TRIM28-207ENST00000597136 ELAVL1Q15717 326 aaKnown RBP13.95□□□□□ -0.18
TRIM28-207ENST00000597136 SPRED3Q2MJR0 410 aa13.95□□□□□ -0.18
TRIM28-207ENST00000597136 COLEC12Q5KU26 742 aa13.95□□□□□ -0.18
TRIM28-207ENST00000597136 C6orf10Q5SRN2 563 aa13.95□□□□□ -0.18
TRIM28-207ENST00000597136 DLEU7Q6UYE1 221 aa13.95□□□□□ -0.18
TRIM28-207ENST00000597136 LRRC25Q8N386 305 aaPredicted RBP13.95□□□□□ -0.18
TRIM28-207ENST00000597136 APCDD1LQ8NCL9 501 aa13.95□□□□□ -0.18
TRIM28-207ENST00000597136 GOT1L1Q8NHS2 421 aaPredicted RBP13.95□□□□□ -0.18
TRIM28-207ENST00000597136 FBXO27Q8NI29 283 aa13.95□□□□□ -0.18
TRIM28-207ENST00000597136 M1APQ8TC57 530 aa13.95□□□□□ -0.18
TRIM28-207ENST00000597136 ELP5Q8TE02 316 aa13.95□□□□□ -0.18
TRIM28-207ENST00000597136 OR5P2Q8WZ92 322 aa13.95□□□□□ -0.18
TRIM28-207ENST00000597136 SLC39A7Q92504 469 aa13.95□□□□□ -0.18
TRIM28-207ENST00000597136 PANX1Q96RD7 426 aa13.95□□□□□ -0.18
TRIM28-207ENST00000597136 SLAMF8Q9P0V8 285 aa13.95□□□□□ -0.18
TRIM28-207ENST00000597136 ZNF223Q9UK11 482 aaPredicted RBP13.95□□□□□ -0.18
TRIM28-207ENST00000597136 PCDHGA9Q9Y5G4 932 aaKnown RBP13.95□□□□□ -0.18
TRIM28-207ENST00000597136 SHANK1Q9Y566 2161 aa13.95□□□□□ -0.18
TRIM28-207ENST00000597136 A0A096LPI6 279 aa13.94□□□□□ -0.18
TRIM28-207ENST00000597136 B2RBV5 119 aa13.94□□□□□ -0.18
TRIM28-207ENST00000597136 C17orf105B2RV13 164 aa13.94□□□□□ -0.18
TRIM28-207ENST00000597136 RFXANKO14593 260 aa13.94□□□□□ -0.18
TRIM28-207ENST00000597136 PRKNO60260 465 aaPredicted RBP13.94□□□□□ -0.18
TRIM28-207ENST00000597136 ATP5HO75947 161 aa13.94□□□□□ -0.18
TRIM28-207ENST00000597136 CPSF4O95639 269 aaKnown RBP13.94□□□□□ -0.18
TRIM28-207ENST00000597136 DDAH2O95865 285 aa13.94□□□□□ -0.18
TRIM28-207ENST00000597136 NPPAP01160 153 aa13.94□□□□□ -0.18
TRIM28-207ENST00000597136 ICAM2P13598 275 aa13.94□□□□□ -0.18
TRIM28-207ENST00000597136 PTPN6P29350 595 aa13.94□□□□□ -0.18
TRIM28-207ENST00000597136 CDKN2CP42773 168 aa13.94□□□□□ -0.18
TRIM28-207ENST00000597136 CD97P48960 835 aa13.94□□□□□ -0.18
TRIM28-207ENST00000597136 NUDT2P50583 147 aa13.94□□□□□ -0.18
TRIM28-207ENST00000597136 HSPB3Q12988 150 aa13.94□□□□□ -0.18
TRIM28-207ENST00000597136 BIKQ13323 160 aa13.94□□□□□ -0.18
TRIM28-207ENST00000597136 ART3Q13508 389 aa13.94□□□□□ -0.18
TRIM28-207ENST00000597136 EXT1Q16394 746 aa13.94□□□□□ -0.18
TRIM28-207ENST00000597136 TCTN3Q6NUS6 607 aa13.94□□□□□ -0.18
TRIM28-207ENST00000597136 B3GNT7Q8NFL0 401 aa13.94□□□□□ -0.18
TRIM28-207ENST00000597136 OR4A15Q8NGL6 344 aa13.94□□□□□ -0.18
TRIM28-207ENST00000597136 ZFP28Q8NHY6 868 aa13.94□□□□□ -0.18
TRIM28-207ENST00000597136 C9orf43Q8TAL5 461 aaPredicted RBP13.94□□□□□ -0.18
TRIM28-207ENST00000597136 NCLNQ969V3 563 aa13.94□□□□□ -0.18
TRIM28-207ENST00000597136 RBM18Q96H35 190 aaKnown RBP13.94□□□□□ -0.18
TRIM28-207ENST00000597136 DGAT2Q96PD7 388 aa13.94□□□□□ -0.18
TRIM28-207ENST00000597136 SMAD5Q99717 465 aaKnown RBP13.94□□□□□ -0.18
TRIM28-207ENST00000597136 PAIP1Q9H074 479 aaKnown RBP13.94□□□□□ -0.18
TRIM28-207ENST00000597136 IL1RL2Q9HB29 575 aa13.94□□□□□ -0.18
TRIM28-207ENST00000597136 SLC6A13Q9NSD5 602 aa13.94□□□□□ -0.18
TRIM28-207ENST00000597136 TAS2R9Q9NYW1 312 aa13.94□□□□□ -0.18
TRIM28-207ENST00000597136 PCDHGB4Q9UN71 923 aa13.94□□□□□ -0.18
TRIM28-207ENST00000597136 CLCA3PQ9Y6N3 262 aa13.94□□□□□ -0.18
TRIM28-207ENST00000597136 ERN1O75460 977 aaKnown RBP13.93□□□□□ -0.18
TRIM28-207ENST00000597136 KCNH1O95259 989 aa13.93□□□□□ -0.18
TRIM28-207ENST00000597136 ATP1B1P05026 303 aa13.93□□□□□ -0.18
TRIM28-207ENST00000597136 CT62P0C5K7 136 aa13.93□□□□□ -0.18
TRIM28-207ENST00000597136 SOX18P35713 384 aa13.93□□□□□ -0.18
TRIM28-207ENST00000597136 PGDP52209 483 aa13.93□□□□□ -0.18
TRIM28-207ENST00000597136 NFYCQ13952 458 aa13.93□□□□□ -0.18
TRIM28-207ENST00000597136 TRMT5Q32P41 509 aaKnown RBP13.93□□□□□ -0.18
TRIM28-207ENST00000597136 LACTB2Q53H82 288 aaPredicted RBP13.93□□□□□ -0.18
TRIM28-207ENST00000597136 LRIF1Q5T3J3 769 aa13.93□□□□□ -0.18
TRIM28-207ENST00000597136 H3F3CQ6NXT2 135 aa13.93□□□□□ -0.18
TRIM28-207ENST00000597136 HACD2Q6Y1H2 254 aa13.93□□□□□ -0.18
TRIM28-207ENST00000597136 LINC00696Q6ZRV3 163 aa13.93□□□□□ -0.18
TRIM28-207ENST00000597136 RINLQ6ZS11 566 aa13.93□□□□□ -0.18
TRIM28-207ENST00000597136 ST13P4Q8IZP2 240 aaPredicted RBP13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms