RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 A3GALT2U3KPV4 340 aa14.45□□□□□ -0.1
UPF1-204ENST00000596842 FAM240BA0A1B0GVZ2 78 aa14.44□□□□□ -0.1
UPF1-204ENST00000596842 WASH3PC4AMC7 463 aa14.44□□□□□ -0.1
UPF1-204ENST00000596842 PLOD3O60568 738 aa14.44□□□□□ -0.1
UPF1-204ENST00000596842 ADAP00813 363 aa14.44□□□□□ -0.1
UPF1-204ENST00000596842 PRLHRP49683 370 aa14.44□□□□□ -0.1
UPF1-204ENST00000596842 PGBD2Q6P3X8 592 aa14.44□□□□□ -0.1
UPF1-204ENST00000596842 ASB18Q6ZVZ8 466 aa14.44□□□□□ -0.1
UPF1-204ENST00000596842 PARS2Q7L3T8 475 aaKnown RBP14.44□□□□□ -0.1
UPF1-204ENST00000596842 SDR16C5Q8N3Y7 309 aa14.44□□□□□ -0.1
UPF1-204ENST00000596842 VN1R2Q8NFZ6 395 aa14.44□□□□□ -0.1
UPF1-204ENST00000596842 VOPP1Q96AW1 172 aa14.44□□□□□ -0.1
UPF1-204ENST00000596842 KCTD7Q96MP8 289 aa14.44□□□□□ -0.1
UPF1-204ENST00000596842 SLC6A18Q96N87 628 aa14.44□□□□□ -0.1
UPF1-204ENST00000596842 BBS4Q96RK4 519 aa14.44□□□□□ -0.1
UPF1-204ENST00000596842 ZNF607Q96SK3 696 aa14.44□□□□□ -0.1
UPF1-204ENST00000596842 OR51I1Q9H343 314 aa14.44□□□□□ -0.1
UPF1-204ENST00000596842 CLCA2Q9UQC9 943 aa14.44□□□□□ -0.1
UPF1-204ENST00000596842 SCN5AQ14524 2016 aa14.44□□□□□ -0.1
UPF1-204ENST00000596842 CD8B2A6NJW9 211 aa14.44□□□□□ -0.1
UPF1-204ENST00000596842 CPSF4LA6NMK7 179 aaKnown RBP14.44□□□□□ -0.1
UPF1-204ENST00000596842 CXCL14O95715 111 aa14.44□□□□□ -0.1
UPF1-204ENST00000596842 CD8BP10966 210 aa14.44□□□□□ -0.1
UPF1-204ENST00000596842 AVPR1BP47901 424 aa14.44□□□□□ -0.1
UPF1-204ENST00000596842 GPR50Q13585 617 aa14.44□□□□□ -0.1
UPF1-204ENST00000596842 ZNF791Q3KP31 576 aaPredicted RBP14.44□□□□□ -0.1
UPF1-204ENST00000596842 MLIPQ5VWP3 458 aa14.44□□□□□ -0.1
UPF1-204ENST00000596842 SLC30A8Q8IWU4 369 aa14.44□□□□□ -0.1
UPF1-204ENST00000596842 COL26A1Q96A83 441 aa14.44□□□□□ -0.1
UPF1-204ENST00000596842 FRMD6Q96NE9 622 aa14.44□□□□□ -0.1
UPF1-204ENST00000596842 WACQ9BTA9 647 aa14.44□□□□□ -0.1
UPF1-204ENST00000596842 MKRN2Q9H000 416 aaKnown RBP14.44□□□□□ -0.1
UPF1-204ENST00000596842 HDHD2Q9H0R4 259 aa14.44□□□□□ -0.1
UPF1-204ENST00000596842 MAPRE3Q9UPY8 281 aa14.44□□□□□ -0.1
UPF1-204ENST00000596842 ZNF670-ZNF695F2Z2N8 137 aa14.44□□□□□ -0.1
UPF1-204ENST00000596842 CAPN5O15484 640 aaPredicted RBP14.44□□□□□ -0.1
UPF1-204ENST00000596842 RECKO95980 971 aa14.44□□□□□ -0.1
UPF1-204ENST00000596842 ACRP10323 421 aa14.44□□□□□ -0.1
UPF1-204ENST00000596842 SLC2A2P11168 524 aaPredicted RBP14.44□□□□□ -0.1
UPF1-204ENST00000596842 ADIPOR2Q86V24 386 aa14.44□□□□□ -0.1
UPF1-204ENST00000596842 KREMEN2Q8NCW0 462 aa14.44□□□□□ -0.1
UPF1-204ENST00000596842 SCN3AQ9NY46 2000 aa14.44□□□□□ -0.1
UPF1-204ENST00000596842 PITPNM1O00562 1244 aa14.43□□□□□ -0.1
UPF1-204ENST00000596842 HPGDSO60760 199 aa14.43□□□□□ -0.1
UPF1-204ENST00000596842 ALX3O95076 343 aa14.43□□□□□ -0.1
UPF1-204ENST00000596842 GLULP15104 373 aa14.43□□□□□ -0.1
UPF1-204ENST00000596842 MMP11P24347 488 aa14.43□□□□□ -0.1
UPF1-204ENST00000596842 SSR2P43308 183 aa14.43□□□□□ -0.1
UPF1-204ENST00000596842 KRT78Q8N1N4 520 aa14.43□□□□□ -0.1
UPF1-204ENST00000596842 CPA6Q8N4T0 437 aa14.43□□□□□ -0.1
UPF1-204ENST00000596842 OR4F15Q8NGB8 312 aa14.43□□□□□ -0.1
UPF1-204ENST00000596842 OR52I1Q8NGK6 324 aa14.43□□□□□ -0.1
UPF1-204ENST00000596842 RNFT2Q96EX2 444 aa14.43□□□□□ -0.1
UPF1-204ENST00000596842 RSPO3Q9BXY4 272 aaPredicted RBP14.43□□□□□ -0.1
UPF1-204ENST00000596842 SRRQ9GZT4 340 aa14.43□□□□□ -0.1
UPF1-204ENST00000596842 MYNNQ9NPC7 610 aa14.43□□□□□ -0.1
UPF1-204ENST00000596842 AHSPQ9NZD4 102 aa14.43□□□□□ -0.1
UPF1-204ENST00000596842 PLXND1Q9Y4D7 1925 aa14.43□□□□□ -0.1
UPF1-204ENST00000596842 ANAPC1Q9H1A4 1944 aa14.43□□□□□ -0.1
UPF1-204ENST00000596842 CSF3P09919 207 aa14.43□□□□□ -0.1
UPF1-204ENST00000596842 PPP2R1BP30154 601 aa14.43□□□□□ -0.1
UPF1-204ENST00000596842 RPL3P39023 403 aaKnown RBP14.43□□□□□ -0.1
UPF1-204ENST00000596842 P2RY14Q15391 338 aa14.43□□□□□ -0.1
UPF1-204ENST00000596842 SMARCD3Q6STE5 483 aa14.43□□□□□ -0.1
UPF1-204ENST00000596842 LAS2Q8IYD9 372 aa14.43□□□□□ -0.1
UPF1-204ENST00000596842 SLC39A11Q8N1S5 342 aa14.43□□□□□ -0.1
UPF1-204ENST00000596842 OR6T1Q8NGN1 323 aa14.43□□□□□ -0.1
UPF1-204ENST00000596842 TEFMQ96QE5 360 aaKnown RBP14.43□□□□□ -0.1
UPF1-204ENST00000596842 PLA2G12AQ9BZM1 189 aa14.43□□□□□ -0.1
UPF1-204ENST00000596842 MRPL39Q9NYK5 338 aaKnown RBP14.43□□□□□ -0.1
UPF1-204ENST00000596842 REV1Q9UBZ9 1251 aa14.43□□□□□ -0.1
UPF1-204ENST00000596842 FBXW2Q9UKT8 454 aa14.43□□□□□ -0.1
UPF1-204ENST00000596842 HCN2Q9UL51 889 aa14.43□□□□□ -0.1
UPF1-204ENST00000596842 MGAT4BQ9UQ53 548 aa14.43□□□□□ -0.1
UPF1-204ENST00000596842 SCN2AQ99250 2005 aa14.43□□□□□ -0.1
UPF1-204ENST00000596842 CHD7Q9P2D1 2997 aa14.43□□□□□ -0.1
UPF1-204ENST00000596842 ANTXRLA6NF34 631 aa14.43□□□□□ -0.1
UPF1-204ENST00000596842 SYN1P17600 705 aa14.43□□□□□ -0.1
UPF1-204ENST00000596842 TAS2R41P59536 307 aa14.43□□□□□ -0.1
UPF1-204ENST00000596842 EEF1A2Q05639 463 aaKnown RBP14.43□□□□□ -0.1
UPF1-204ENST00000596842 ZNF805Q5CZA5 627 aa14.43□□□□□ -0.1
UPF1-204ENST00000596842 FAM205BPQ63HN1 556 aa14.43□□□□□ -0.1
UPF1-204ENST00000596842 SLC30A6Q6NXT4 461 aa14.43□□□□□ -0.1
UPF1-204ENST00000596842 TECPR1Q7Z6L1 1165 aa14.43□□□□□ -0.1
UPF1-204ENST00000596842 ZER1Q7Z7L7 766 aa14.43□□□□□ -0.1
UPF1-204ENST00000596842 SLC9B2Q86UD5 537 aa14.43□□□□□ -0.1
UPF1-204ENST00000596842 COMTD1Q86VU5 262 aa14.43□□□□□ -0.1
UPF1-204ENST00000596842 CCDC116Q8IYX3 515 aa14.43□□□□□ -0.1
UPF1-204ENST00000596842 ADGRF3Q8IZF5 1079 aa14.43□□□□□ -0.1
UPF1-204ENST00000596842 Q8N402 240 aa14.43□□□□□ -0.1
UPF1-204ENST00000596842 SMPDL3AQ92484 453 aa14.43□□□□□ -0.1
UPF1-204ENST00000596842 GPA33Q99795 319 aa14.43□□□□□ -0.1
UPF1-204ENST00000596842 NDRG2Q9UN36 371 aaKnown RBP14.43□□□□□ -0.1
UPF1-204ENST00000596842 RANBP2P49792 3224 aaKnown RBP14.43□□□□□ -0.1
UPF1-204ENST00000596842 LOC102723532A0A0G2JNH3 316 aa14.42□□□□□ -0.1
UPF1-204ENST00000596842 QSOX1O00391 747 aa14.42□□□□□ -0.1
UPF1-204ENST00000596842 SLC30A4O14863 429 aa14.42□□□□□ -0.1
UPF1-204ENST00000596842 HOXD10P28358 340 aa14.42□□□□□ -0.1
UPF1-204ENST00000596842 OR3A3P47888 321 aa14.42□□□□□ -0.1
UPF1-204ENST00000596842 NCBP2P52298 156 aaKnown RBP eCLIP14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms