RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 KCNAB2Q13303 367 aa9.79□□□□□ -0.84
LIG1-210ENST00000596332 LY6DQ14210 128 aa9.79□□□□□ -0.84
LIG1-210ENST00000596332 PGS1Q32NB8 556 aa9.79□□□□□ -0.84
LIG1-210ENST00000596332 CT45A2Q5DJT8 189 aa9.79□□□□□ -0.84
LIG1-210ENST00000596332 PIGGQ5H8A4 983 aa9.79□□□□□ -0.84
LIG1-210ENST00000596332 ACER2Q5QJU3 275 aa9.79□□□□□ -0.84
LIG1-210ENST00000596332 TMEM107Q6UX40 140 aa9.79□□□□□ -0.84
LIG1-210ENST00000596332 NPSR1Q6W5P4 371 aa9.79□□□□□ -0.84
LIG1-210ENST00000596332 RPS19BP1Q86WX3 136 aaKnown RBP9.79□□□□□ -0.84
LIG1-210ENST00000596332 MSRB3Q8IXL7 192 aa9.79□□□□□ -0.84
LIG1-210ENST00000596332 SAMD14Q8IZD0 417 aaPredicted RBP9.79□□□□□ -0.84
LIG1-210ENST00000596332 FAM9CQ8IZT9 166 aa9.79□□□□□ -0.84
LIG1-210ENST00000596332 CLEC4FQ8N1N0 589 aa9.79□□□□□ -0.84
LIG1-210ENST00000596332 RBMXL3Q8N7X1 1067 aaKnown RBP9.79□□□□□ -0.84
LIG1-210ENST00000596332 OR7G1Q8NGA0 311 aa9.79□□□□□ -0.84
LIG1-210ENST00000596332 OR52R1Q8NGF1 315 aa9.79□□□□□ -0.84
LIG1-210ENST00000596332 NUBPLQ8TB37 319 aa9.79□□□□□ -0.84
LIG1-210ENST00000596332 THAP3Q8WTV1 239 aaPredicted RBP9.79□□□□□ -0.84
LIG1-210ENST00000596332 VPS33AQ96AX1 596 aa9.79□□□□□ -0.84
LIG1-210ENST00000596332 ERP27Q96DN0 273 aa9.79□□□□□ -0.84
LIG1-210ENST00000596332 FAM120BQ96EK7 910 aaKnown RBP9.79□□□□□ -0.84
LIG1-210ENST00000596332 WBP1Q96G27 269 aa9.79□□□□□ -0.84
LIG1-210ENST00000596332 CCDC115Q96NT0 180 aa9.79□□□□□ -0.84
LIG1-210ENST00000596332 LMF1Q96S06 567 aa9.79□□□□□ -0.84
LIG1-210ENST00000596332 CNPPD1Q9BV87 410 aa9.79□□□□□ -0.84
LIG1-210ENST00000596332 WWTR1Q9GZV5 400 aa9.79□□□□□ -0.84
LIG1-210ENST00000596332 MYLK2Q9H1R3 596 aa9.79□□□□□ -0.84
LIG1-210ENST00000596332 SERHL2Q9H4I8 314 aa9.79□□□□□ -0.84
LIG1-210ENST00000596332 RABEP2Q9H5N1 569 aa9.79□□□□□ -0.84
LIG1-210ENST00000596332 GPATCH2Q9NW75 528 aa9.79□□□□□ -0.84
LIG1-210ENST00000596332 GPR83Q9NYM4 423 aa9.79□□□□□ -0.84
LIG1-210ENST00000596332 PLA2G3Q9NZ20 509 aa9.79□□□□□ -0.84
LIG1-210ENST00000596332 SLAMF8Q9P0V8 285 aa9.79□□□□□ -0.84
LIG1-210ENST00000596332 MYOTQ9UBF9 498 aa9.79□□□□□ -0.84
LIG1-210ENST00000596332 TUBD1Q9UJT1 453 aa9.79□□□□□ -0.84
LIG1-210ENST00000596332 LHX6Q9UPM6 363 aa9.79□□□□□ -0.84
LIG1-210ENST00000596332 TP53TG5Q9Y2B4 290 aa9.79□□□□□ -0.84
LIG1-210ENST00000596332 GPR55Q9Y2T6 319 aaPredicted RBP9.79□□□□□ -0.84
LIG1-210ENST00000596332 TLN1Q9Y490 2541 aaKnown RBP9.79□□□□□ -0.84
LIG1-210ENST00000596332 KALRNO60229 2985 aa9.78□□□□□ -0.84
LIG1-210ENST00000596332 SMG1Q96Q15 3661 aaKnown RBP9.78□□□□□ -0.84
LIG1-210ENST00000596332 TNRC6AQ8NDV7 1962 aaKnown RBP9.78□□□□□ -0.84
LIG1-210ENST00000596332 TRBV5-3A0A0A0MS03 114 aa9.78□□□□□ -0.84
LIG1-210ENST00000596332 FAM234BA2RU67 622 aa9.78□□□□□ -0.84
LIG1-210ENST00000596332 OR6C76A6NM76 312 aa9.78□□□□□ -0.84
LIG1-210ENST00000596332 A8MUI8 341 aa9.78□□□□□ -0.84
LIG1-210ENST00000596332 FBP2O00757 339 aa9.78□□□□□ -0.84
LIG1-210ENST00000596332 WDPCPO95876 746 aa9.78□□□□□ -0.84
LIG1-210ENST00000596332 TROVE2P10155 538 aaKnown RBP eCLIP9.78□□□□□ -0.84
LIG1-210ENST00000596332 TRHRP34981 398 aaPredicted RBP9.78□□□□□ -0.84
LIG1-210ENST00000596332 RPL3P39023 403 aaKnown RBP9.78□□□□□ -0.84
LIG1-210ENST00000596332 KIR3DL1P43629 444 aa9.78□□□□□ -0.84
LIG1-210ENST00000596332 POLR2JP52435 117 aaKnown RBP9.78□□□□□ -0.84
LIG1-210ENST00000596332 MVDP53602 400 aa9.78□□□□□ -0.84
LIG1-210ENST00000596332 CLNS1AP54105 237 aaKnown RBP9.78□□□□□ -0.84
LIG1-210ENST00000596332 MANFP55145 182 aaKnown RBP9.78□□□□□ -0.84
LIG1-210ENST00000596332 HSPB3Q12988 150 aa9.78□□□□□ -0.84
LIG1-210ENST00000596332 MFAP5Q13361 173 aa9.78□□□□□ -0.84
LIG1-210ENST00000596332 UBAP2LQ14157 1087 aaKnown RBP9.78□□□□□ -0.84
LIG1-210ENST00000596332 RCAN2Q14206 197 aa9.78□□□□□ -0.84
LIG1-210ENST00000596332 CRB2Q5IJ48 1285 aa9.78□□□□□ -0.84
LIG1-210ENST00000596332 PAGE3Q5JUK9 113 aa9.78□□□□□ -0.84
LIG1-210ENST00000596332 DESI1Q6ICB0 168 aa9.78□□□□□ -0.84
LIG1-210ENST00000596332 ISLR2Q6UXK2 745 aa9.78□□□□□ -0.84
LIG1-210ENST00000596332 HSDL2Q6YN16 418 aa9.78□□□□□ -0.84
LIG1-210ENST00000596332 SPATA21Q7Z572 469 aa9.78□□□□□ -0.84
LIG1-210ENST00000596332 WDR53Q7Z5U6 358 aaPredicted RBP9.78□□□□□ -0.84
LIG1-210ENST00000596332 RETREG3Q86VR2 466 aa9.78□□□□□ -0.84
LIG1-210ENST00000596332 ANKRD46Q86W74 232 aa9.78□□□□□ -0.84
LIG1-210ENST00000596332 TREML1Q86YW5 311 aa9.78□□□□□ -0.84
LIG1-210ENST00000596332 LGI4Q8N135 537 aa9.78□□□□□ -0.84
LIG1-210ENST00000596332 BEST3Q8N1M1 668 aa9.78□□□□□ -0.84
LIG1-210ENST00000596332 MIER2Q8N344 545 aa9.78□□□□□ -0.84
LIG1-210ENST00000596332 GLB1L3Q8NCI6 653 aaPredicted RBP9.78□□□□□ -0.84
LIG1-210ENST00000596332 CATSPER1Q8NEC5 780 aa9.78□□□□□ -0.84
LIG1-210ENST00000596332 GTF2H4Q92759 462 aa9.78□□□□□ -0.84
LIG1-210ENST00000596332 HAS2Q92819 552 aa9.78□□□□□ -0.84
LIG1-210ENST00000596332 ZBED6CLQ96FA7 236 aaPredicted RBP9.78□□□□□ -0.84
LIG1-210ENST00000596332 C16orf58Q96GQ5 468 aa9.78□□□□□ -0.84
LIG1-210ENST00000596332 VPS50Q96JG6 964 aa9.78□□□□□ -0.84
LIG1-210ENST00000596332 PHF12Q96QT6 1004 aa9.78□□□□□ -0.84
LIG1-210ENST00000596332 RASL10BQ96S79 203 aa9.78□□□□□ -0.84
LIG1-210ENST00000596332 CCT8L2Q96SF2 557 aa9.78□□□□□ -0.84
LIG1-210ENST00000596332 SLC25A23Q9BV35 468 aa9.78□□□□□ -0.84
LIG1-210ENST00000596332 CCDC106Q9BWC9 280 aa9.78□□□□□ -0.84
LIG1-210ENST00000596332 DEFB126Q9BYW3 111 aa9.78□□□□□ -0.84
LIG1-210ENST00000596332 NMUR2Q9GZQ4 415 aa9.78□□□□□ -0.84
LIG1-210ENST00000596332 PAIP1Q9H074 479 aaKnown RBP9.78□□□□□ -0.84
LIG1-210ENST00000596332 NXF5Q9H1B4 397 aaKnown RBP9.78□□□□□ -0.84
LIG1-210ENST00000596332 EPN3Q9H201 632 aa9.78□□□□□ -0.84
LIG1-210ENST00000596332 ADNPQ9H2P0 1102 aa9.78□□□□□ -0.84
LIG1-210ENST00000596332 SH2D2AQ9NP31 389 aa9.78□□□□□ -0.84
LIG1-210ENST00000596332 TMEM45AQ9NWC5 275 aa9.78□□□□□ -0.84
LIG1-210ENST00000596332 STMN3Q9NZ72 180 aa9.78□□□□□ -0.84
LIG1-210ENST00000596332 BTNL2Q9UIR0 455 aa9.78□□□□□ -0.84
LIG1-210ENST00000596332 RALYQ9UKM9 306 aaKnown RBP9.78□□□□□ -0.84
LIG1-210ENST00000596332 ENTPD4Q9Y227 616 aa9.78□□□□□ -0.84
LIG1-210ENST00000596332 HEMK1Q9Y5R4 338 aaPredicted RBP9.78□□□□□ -0.84
LIG1-210ENST00000596332 KCNE3Q9Y6H6 103 aa9.78□□□□□ -0.84
LIG1-210ENST00000596332 CPAMD8Q8IZJ3 1885 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms