RNA–Protein interactions for RNA: ENST00000589117.5

ZNF540-206, Transcript of zinc finger protein 540, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene ZNF540, Length 2,349 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-206ENST00000589117 CD97P48960 835 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 XKP51811 444 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 NUDT6P53370 316 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 STXBP1P61764 594 aaKnown RBP6.99□□□□□ -1.29
ZNF540-206ENST00000589117 CSNK1G2P78368 415 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 PRR5P85299 388 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 RELAQ04206 551 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 MESP2Q0VG99 397 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 PUM1Q14671 1186 aaKnown RBP eCLIP6.99□□□□□ -1.29
ZNF540-206ENST00000589117 NCF4Q15080 339 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 ZNF181Q2M3W8 571 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 GAB4Q2WGN9 574 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 SPANXN2Q5MJ10 180 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 PRAMEF8Q5VWM4 474 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 PRAMEF7Q5VXH5 474 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 TMEM64Q6YI46 380 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 DEF8Q6ZN54 512 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 GDPGP1Q6ZNW5 385 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 LACC1Q8IV20 430 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 ADGRF3Q8IZF5 1079 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 C12orf76Q8N812 135 aaPredicted RBP6.99□□□□□ -1.29
ZNF540-206ENST00000589117 IL17RCQ8NAC3 791 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 OR2L8Q8NGY9 312 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 RAB8BQ92930 207 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 MGLLQ99685 303 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 BTBD2Q9BX70 525 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 ZNF717Q9BY31 904 aaPredicted RBP6.99□□□□□ -1.29
ZNF540-206ENST00000589117 PRRG3Q9BZD7 231 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 C6orf62Q9GZU0 229 aaPredicted RBP6.99□□□□□ -1.29
ZNF540-206ENST00000589117 ADAM19Q9H013 955 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 RSPH9Q9H1X1 276 aaPredicted RBP6.99□□□□□ -1.29
ZNF540-206ENST00000589117 C3orf14Q9HBI5 128 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 ZCCHC3Q9NUD5 404 aaKnown RBP6.99□□□□□ -1.29
ZNF540-206ENST00000589117 IMP3Q9NV31 184 aaKnown RBP6.99□□□□□ -1.29
ZNF540-206ENST00000589117 CALML5Q9NZT1 146 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 CCDC59Q9P031 241 aaKnown RBP6.99□□□□□ -1.29
ZNF540-206ENST00000589117 CRNNQ9UBG3 495 aaPredicted RBP6.99□□□□□ -1.29
ZNF540-206ENST00000589117 SUSD2Q9UGT4 822 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 KLF15Q9UIH9 416 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 KLHL20Q9Y2M5 609 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 IFT52Q9Y366 437 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 UGT2A1Q9Y4X1 527 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 STON1Q9Y6Q2 735 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 A0A0G2JPF8 293 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 A0A1W2PRQ8 180 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 PRAMEF25A6NGN4 478 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 HNRNPCL2B2RXH8 293 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 HNRNPCL3B7ZW38 293 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 CASC3O15234 703 aaKnown RBP6.99□□□□□ -1.29
ZNF540-206ENST00000589117 MID1O15344 667 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 NME6O75414 186 aaPredicted RBP6.99□□□□□ -1.29
ZNF540-206ENST00000589117 SLITRK5O94991 958 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 PAK4O96013 591 aaPredicted RBP6.99□□□□□ -1.29
ZNF540-206ENST00000589117 TP53P04637 393 aaPredicted RBP6.99□□□□□ -1.29
ZNF540-206ENST00000589117 HNRNPCL4P0DMR1 293 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 OR12D1P0DN82 309 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 ACP5P13686 325 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 GADD45AP24522 165 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 PSMA1P25786 263 aaKnown RBP6.99□□□□□ -1.29
ZNF540-206ENST00000589117 NDUFS1P28331 727 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 CMPK1P30085 196 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 CSTF2P33240 577 aaKnown RBP eCLIP6.99□□□□□ -1.29
ZNF540-206ENST00000589117 NCBP2P52298 156 aaKnown RBP eCLIP6.99□□□□□ -1.29
ZNF540-206ENST00000589117 DEFA1P59665 94 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 DEFA3P59666 94 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 RHAGQ02094 409 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 TARDBPQ13148 414 aaKnown RBP eCLIP6.99□□□□□ -1.29
ZNF540-206ENST00000589117 ATAD3BQ5T9A4 648 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 TMEM236Q5W0B7 351 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 ZNF776Q68DI1 518 aaPredicted RBP6.99□□□□□ -1.29
ZNF540-206ENST00000589117 ZNF770Q6IQ21 691 aaPredicted RBP6.99□□□□□ -1.29
ZNF540-206ENST00000589117 KIAA1161Q6NSJ0 714 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 TCTN3Q6NUS6 607 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 VITQ6UXI7 678 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 GET4Q7L5D6 327 aaPredicted RBP6.99□□□□□ -1.29
ZNF540-206ENST00000589117 RRM2BQ7LG56 351 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 SAMD14Q8IZD0 417 aaPredicted RBP6.99□□□□□ -1.29
ZNF540-206ENST00000589117 ZNF513Q8N8E2 541 aaPredicted RBP6.99□□□□□ -1.29
ZNF540-206ENST00000589117 OR56A1Q8NGH5 318 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 SUN3Q8TAQ9 357 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 SFXN5Q8TD22 340 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 RPL3LQ92901 407 aaKnown RBP6.99□□□□□ -1.29
ZNF540-206ENST00000589117 TMEM80Q96HE8 168 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 FAM210AQ96ND0 272 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 AMDHD1Q96NU7 426 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 C17orf62Q9BQA9 187 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 DPH7Q9BTV6 452 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 SIAEQ9HAT2 523 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 ZBTB20Q9HC78 741 aaPredicted RBP6.99□□□□□ -1.29
ZNF540-206ENST00000589117 BCL2L10Q9HD36 194 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 RHCGQ9UBD6 479 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 FTSJ1Q9UET6 329 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 MKLN1Q9UL63 735 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 ATXN7L1Q9ULK2 861 aaPredicted RBP6.99□□□□□ -1.29
ZNF540-206ENST00000589117 PAIP2BQ9ULR5 123 aaKnown RBP6.99□□□□□ -1.29
ZNF540-206ENST00000589117 SLC6A14Q9UN76 642 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 SNX7Q9UNH6 387 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 OR1A2Q9Y585 309 aa6.99□□□□□ -1.29
ZNF540-206ENST00000589117 PRRC2BQ5JSZ5 2229 aaKnown RBP6.98□□□□□ -1.29
ZNF540-206ENST00000589117 A0A0A6YYD5 115 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms