RNA–Protein interactions for RNA: ENST00000578317.5

COPS3-215, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2

Gene COPS3, Length 1,625 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-215ENST00000578317 FAM149AA5PLN7 773 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 PLOD2O00469 737 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 RFXANKO14593 260 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 AIM2O14862 343 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 FGF17O60258 216 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 B4GALT2O60909 372 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 PRKRAO75569 313 aaKnown RBP7.49□□□□□ -1.21
COPS3-215ENST00000578317 PPM1BO75688 479 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 ATP1B1P05026 303 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 CPMP14384 443 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 CPOXP36551 454 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 MANFP55145 182 aaKnown RBP7.49□□□□□ -1.21
COPS3-215ENST00000578317 HBA1P69905 142 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 RNF4P78317 190 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 GABREP78334 506 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 RHAGQ02094 409 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 FOLH1Q04609 750 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 SLC13A2Q13183 592 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 ART3Q13508 389 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 ANKRD39Q53RE8 183 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 VWA2Q5GFL6 755 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 ANKRD34AQ69YU3 496 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 REP15Q6BDI9 236 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 SLC2A7Q6PXP3 512 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.49□□□□□ -1.21
COPS3-215ENST00000578317 DTX1Q86Y01 620 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 SHISA5Q8N114 240 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 LRRC25Q8N386 305 aaPredicted RBP7.49□□□□□ -1.21
COPS3-215ENST00000578317 POU5F2Q8N7G0 328 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 SUN3Q8TAQ9 357 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 CIDECQ96AQ7 238 aaPredicted RBP7.49□□□□□ -1.21
COPS3-215ENST00000578317 EXOSC8Q96B26 276 aaKnown RBP7.49□□□□□ -1.21
COPS3-215ENST00000578317 MIEF2Q96C03 454 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 KLHL29Q96CT2 875 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 SLC7A6OSQ96CW6 309 aaPredicted RBP7.49□□□□□ -1.21
COPS3-215ENST00000578317 LRRC58Q96CX6 371 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 RBM18Q96H35 190 aaKnown RBP7.49□□□□□ -1.21
COPS3-215ENST00000578317 BBS4Q96RK4 519 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 GPATCH1Q9BRR8 931 aaKnown RBP7.49□□□□□ -1.21
COPS3-215ENST00000578317 PELOQ9BRX2 385 aaKnown RBP7.49□□□□□ -1.21
COPS3-215ENST00000578317 GPR87Q9BY21 358 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 ALOXE3Q9BYJ1 711 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 PAIP1Q9H074 479 aaKnown RBP7.49□□□□□ -1.21
COPS3-215ENST00000578317 CHST8Q9H2A9 424 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 GLIPR2Q9H4G4 154 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 SLAMF7Q9NQ25 335 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 ASCL3Q9NQ33 180 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 NDE1Q9NXR1 346 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 TAS2R1Q9NYW7 299 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 C5AR2Q9P296 337 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 WASF3Q9UPY6 502 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 ENTPD4Q9Y227 616 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 FREM2Q5SZK8 3169 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 MDC1Q14676 2089 aaKnown RBP7.49□□□□□ -1.21
COPS3-215ENST00000578317 A0A087WV62 115 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 TRBV5-3A0A0A0MS03 114 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 TCRBV16S1A1N1A0A5B0 115 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 C21orf140B9A014 251 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 C9J4A7 227 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 STMND1H3BQB6 276 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 MRASO14807 208 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 PLOD3O60568 738 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 LDB3O75112 727 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 JRKO75564 520 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 ERAL1O75616 437 aaKnown RBP7.49□□□□□ -1.21
COPS3-215ENST00000578317 KLF7O75840 302 aaPredicted RBP7.49□□□□□ -1.21
COPS3-215ENST00000578317 KCNH1O95259 989 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 HOXB9P17482 250 aaPredicted RBP7.49□□□□□ -1.21
COPS3-215ENST00000578317 PTPN4P29074 926 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 NTSP30990 170 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 SLC5A2P31639 672 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 FEN1P39748 380 aaKnown RBP7.49□□□□□ -1.21
COPS3-215ENST00000578317 MAGEA8P43361 318 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 STT3AP46977 705 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 BTG2P78543 158 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 STX4Q12846 297 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 MAP4K2Q12851 820 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 ERV3-1Q14264 604 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 NCF4Q15080 339 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 TRMT5Q32P41 509 aaKnown RBP7.49□□□□□ -1.21
COPS3-215ENST00000578317 MLIPQ5VWP3 458 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 LCN10Q6JVE6 187 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 FAM198BQ6UWH4 519 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 TMEM64Q6YI46 380 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 NLGN4XQ8N0W4 816 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 TRIML2Q8N7C3 387 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 NLGN4YQ8NFZ3 816 aaPredicted RBP7.49□□□□□ -1.21
COPS3-215ENST00000578317 ZFP28Q8NHY6 868 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 ZNF675Q8TD23 568 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 MR1Q95460 341 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 CTHRC1Q96CG8 243 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 RCN3Q96D15 328 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 ZNF578Q96N58 590 aaPredicted RBP7.49□□□□□ -1.21
COPS3-215ENST00000578317 PTCHD1Q96NR3 888 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 PANX1Q96RD7 426 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 NPAS2Q99743 824 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 SH3GL1Q99961 368 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 BTBD10Q9BSF8 475 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 YIPF2Q9BWQ6 316 aa7.49□□□□□ -1.21
COPS3-215ENST00000578317 TRIM4Q9C037 500 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms