RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 WDSUB1Q8N9V3 476 aa10.59□□□□□ -0.71
CLK3-222ENST00000568232 SMAP2Q8WU79 429 aaPredicted RBP10.59□□□□□ -0.71
CLK3-222ENST00000568232 RIT1Q92963 219 aa10.59□□□□□ -0.71
CLK3-222ENST00000568232 TP53INP1Q96A56 240 aa10.59□□□□□ -0.71
CLK3-222ENST00000568232 REPS1Q96D71 796 aa10.59□□□□□ -0.71
CLK3-222ENST00000568232 HES6Q96HZ4 224 aa10.59□□□□□ -0.71
CLK3-222ENST00000568232 TNFRSF13CQ96RJ3 184 aa10.59□□□□□ -0.71
CLK3-222ENST00000568232 NT5DC2Q9H857 520 aa10.59□□□□□ -0.71
CLK3-222ENST00000568232 TAS2R10Q9NYW0 307 aa10.59□□□□□ -0.71
CLK3-222ENST00000568232 EPN1Q9Y6I3 576 aaPredicted RBP10.59□□□□□ -0.71
CLK3-222ENST00000568232 SPACA6W5XKT8 324 aa10.59□□□□□ -0.71
CLK3-222ENST00000568232 MAGEB16A2A368 324 aa10.58□□□□□ -0.72
CLK3-222ENST00000568232 SDR42E2A6NKP2 422 aa10.58□□□□□ -0.72
CLK3-222ENST00000568232 H0YC42 278 aa10.58□□□□□ -0.72
CLK3-222ENST00000568232 GOLGA8MH3BSY2 632 aa10.58□□□□□ -0.72
CLK3-222ENST00000568232 EMC8O43402 210 aa10.58□□□□□ -0.72
CLK3-222ENST00000568232 OR10H2O60403 315 aa10.58□□□□□ -0.72
CLK3-222ENST00000568232 CBR3O75828 277 aa10.58□□□□□ -0.72
CLK3-222ENST00000568232 AHSGP02765 367 aa10.58□□□□□ -0.72
CLK3-222ENST00000568232 ABCB1P08183 1280 aaPredicted RBP10.58□□□□□ -0.72
CLK3-222ENST00000568232 CD8BP10966 210 aa10.58□□□□□ -0.72
CLK3-222ENST00000568232 ZNF16P17020 682 aaPredicted RBP10.58□□□□□ -0.72
CLK3-222ENST00000568232 HIST1H1TP22492 207 aaPredicted RBP10.58□□□□□ -0.72
CLK3-222ENST00000568232 GSTM2P28161 218 aa10.58□□□□□ -0.72
CLK3-222ENST00000568232 ABCD3P28288 659 aa10.58□□□□□ -0.72
CLK3-222ENST00000568232 HPDP32754 393 aaPredicted RBP10.58□□□□□ -0.72
CLK3-222ENST00000568232 VPS41P49754 854 aa10.58□□□□□ -0.72
CLK3-222ENST00000568232 TMED10P49755 219 aaKnown RBP10.58□□□□□ -0.72
CLK3-222ENST00000568232 TPD52P55327 224 aaPredicted RBP10.58□□□□□ -0.72
CLK3-222ENST00000568232 RPS13P62277 151 aaKnown RBP10.58□□□□□ -0.72
CLK3-222ENST00000568232 RPP38P78345 283 aaKnown RBP10.58□□□□□ -0.72
CLK3-222ENST00000568232 TGM3Q08188 693 aa10.58□□□□□ -0.72
CLK3-222ENST00000568232 SEL1L2Q5TEA6 688 aa10.58□□□□□ -0.72
CLK3-222ENST00000568232 HLA-DQA1Q5Y7H0 255 aa10.58□□□□□ -0.72
CLK3-222ENST00000568232 BHLHB9Q6PI77 547 aa10.58□□□□□ -0.72
CLK3-222ENST00000568232 C4orf22Q6V702 233 aa10.58□□□□□ -0.72
CLK3-222ENST00000568232 MILR1Q7Z6M3 343 aa10.58□□□□□ -0.72
CLK3-222ENST00000568232 LMNTD2Q8IXW0 634 aa10.58□□□□□ -0.72
CLK3-222ENST00000568232 UBQLNLQ8IYU4 475 aa10.58□□□□□ -0.72
CLK3-222ENST00000568232 C2CD4AQ8NCU7 369 aaPredicted RBP10.58□□□□□ -0.72
CLK3-222ENST00000568232 CALML6Q8TD86 181 aa10.58□□□□□ -0.72
CLK3-222ENST00000568232 FBXW5Q969U6 566 aa10.58□□□□□ -0.72
CLK3-222ENST00000568232 ADIPOR1Q96A54 375 aa10.58□□□□□ -0.72
CLK3-222ENST00000568232 HS6ST2Q96MM7 605 aa10.58□□□□□ -0.72
CLK3-222ENST00000568232 SFXN2Q96NB2 322 aa10.58□□□□□ -0.72
CLK3-222ENST00000568232 EGFL8Q99944 293 aa10.58□□□□□ -0.72
CLK3-222ENST00000568232 RHNO1Q9BSD3 238 aa10.58□□□□□ -0.72
CLK3-222ENST00000568232 TBCDQ9BTW9 1192 aa10.58□□□□□ -0.72
CLK3-222ENST00000568232 NTMT1Q9BV86 223 aa10.58□□□□□ -0.72
CLK3-222ENST00000568232 OSBPL11Q9BXB4 747 aa10.58□□□□□ -0.72
CLK3-222ENST00000568232 ESRP2Q9H6T0 727 aaKnown RBP10.58□□□□□ -0.72
CLK3-222ENST00000568232 ACTR8Q9H981 624 aa10.58□□□□□ -0.72
CLK3-222ENST00000568232 PROCRQ9UNN8 238 aa10.58□□□□□ -0.72
CLK3-222ENST00000568232 EXO1Q9UQ84 846 aaKnown RBP10.58□□□□□ -0.72
CLK3-222ENST00000568232 A0A1W2PS29 197 aa10.57□□□□□ -0.72
CLK3-222ENST00000568232 NPEPPSL1A6NEC2 478 aa10.57□□□□□ -0.72
CLK3-222ENST00000568232 GLOD5A6NK44 160 aa10.57□□□□□ -0.72
CLK3-222ENST00000568232 UBFD1O14562 309 aaKnown RBP10.57□□□□□ -0.72
CLK3-222ENST00000568232 CLOCKO15516 846 aa10.57□□□□□ -0.72
CLK3-222ENST00000568232 EGR1P18146 543 aa10.57□□□□□ -0.72
CLK3-222ENST00000568232 CD22P20273 847 aa10.57□□□□□ -0.72
CLK3-222ENST00000568232 IGFBP5P24593 272 aa10.57□□□□□ -0.72
CLK3-222ENST00000568232 CLDN15P56746 228 aa10.57□□□□□ -0.72
CLK3-222ENST00000568232 NRG3P56975 720 aa10.57□□□□□ -0.72
CLK3-222ENST00000568232 SARNPP82979 210 aaKnown RBP10.57□□□□□ -0.72
CLK3-222ENST00000568232 VLDLRP98155 873 aa10.57□□□□□ -0.72
CLK3-222ENST00000568232 SLAMF1Q13291 335 aa10.57□□□□□ -0.72
CLK3-222ENST00000568232 NNATQ16517 81 aa10.57□□□□□ -0.72
CLK3-222ENST00000568232 CCNG2Q16589 344 aa10.57□□□□□ -0.72
CLK3-222ENST00000568232 CYP1B1Q16678 543 aa10.57□□□□□ -0.72
CLK3-222ENST00000568232 AP5B1Q2VPB7 878 aa10.57□□□□□ -0.72
CLK3-222ENST00000568232 FBXO48Q5FWF7 155 aa10.57□□□□□ -0.72
CLK3-222ENST00000568232 SLC30A6Q6NXT4 461 aa10.57□□□□□ -0.72
CLK3-222ENST00000568232 AAGABQ6PD74 315 aa10.57□□□□□ -0.72
CLK3-222ENST00000568232 STAC2Q6ZMT1 411 aa10.57□□□□□ -0.72
CLK3-222ENST00000568232 CHMP1BQ7LBR1 199 aa10.57□□□□□ -0.72
CLK3-222ENST00000568232 TANKQ92844 425 aa10.57□□□□□ -0.72
CLK3-222ENST00000568232 HGDQ93099 445 aa10.57□□□□□ -0.72
CLK3-222ENST00000568232 C1orf159Q96HA4 380 aa10.57□□□□□ -0.72
CLK3-222ENST00000568232 SERPINB12Q96P63 405 aa10.57□□□□□ -0.72
CLK3-222ENST00000568232 FAM167BQ9BTA0 163 aa10.57□□□□□ -0.72
CLK3-222ENST00000568232 ROGDIQ9GZN7 287 aa10.57□□□□□ -0.72
CLK3-222ENST00000568232 ADAM19Q9H013 955 aa10.57□□□□□ -0.72
CLK3-222ENST00000568232 EHD3Q9NZN3 535 aa10.57□□□□□ -0.72
CLK3-222ENST00000568232 KLRF1Q9NZS2 232 aa10.57□□□□□ -0.72
CLK3-222ENST00000568232 SLC17A6Q9P2U8 582 aa10.57□□□□□ -0.72
CLK3-222ENST00000568232 FBXL2Q9UKC9 423 aa10.57□□□□□ -0.72
CLK3-222ENST00000568232 SLC35F4A4IF30 521 aa10.56□□□□□ -0.72
CLK3-222ENST00000568232 CLGNO14967 610 aa10.56□□□□□ -0.72
CLK3-222ENST00000568232 LMX1BO60663 402 aa10.56□□□□□ -0.72
CLK3-222ENST00000568232 SCELO95171 688 aa10.56□□□□□ -0.72
CLK3-222ENST00000568232 TGFB1P01137 390 aa10.56□□□□□ -0.72
CLK3-222ENST00000568232 CD8AP01732 235 aa10.56□□□□□ -0.72
CLK3-222ENST00000568232 PGRP06401 933 aa10.56□□□□□ -0.72
CLK3-222ENST00000568232 CT62P0C5K7 136 aa10.56□□□□□ -0.72
CLK3-222ENST00000568232 PPP3CBP16298 524 aa10.56□□□□□ -0.72
CLK3-222ENST00000568232 PTNP21246 168 aa10.56□□□□□ -0.72
CLK3-222ENST00000568232 CNTFP26441 200 aa10.56□□□□□ -0.72
CLK3-222ENST00000568232 SSR2P43308 183 aa10.56□□□□□ -0.72
CLK3-222ENST00000568232 HNRNPH2P55795 449 aaKnown RBP10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms