RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 GIMAP4Q9NUV9 329 aa19.07■□□□□ 0.64
CLN3-230ENST00000568076 USP36Q9P275 1121 aaKnown RBP19.07■□□□□ 0.64
CLN3-230ENST00000568076 PILRAQ9UKJ1 303 aa19.07■□□□□ 0.64
CLN3-230ENST00000568076 HS3ST3A1Q9Y663 406 aa19.07■□□□□ 0.64
CLN3-230ENST00000568076 ZNF780BQ9Y6R6 833 aa19.07■□□□□ 0.64
CLN3-230ENST00000568076 SCN3AQ9NY46 2000 aa19.07■□□□□ 0.64
CLN3-230ENST00000568076 H3BQ06 376 aaPredicted RBP19.06■□□□□ 0.64
CLN3-230ENST00000568076 CALRP27797 417 aaKnown RBP19.06■□□□□ 0.64
CLN3-230ENST00000568076 POU1F1P28069 291 aa19.06■□□□□ 0.64
CLN3-230ENST00000568076 ALDH4A1P30038 563 aa19.06■□□□□ 0.64
CLN3-230ENST00000568076 TBCEQ15813 527 aaPredicted RBP19.06■□□□□ 0.64
CLN3-230ENST00000568076 GPAT3Q53EU6 434 aa19.06■□□□□ 0.64
CLN3-230ENST00000568076 KLHL35Q6PF15 583 aa19.06■□□□□ 0.64
CLN3-230ENST00000568076 FIGLAQ6QHK4 219 aa19.06■□□□□ 0.64
CLN3-230ENST00000568076 BTBD2Q9BX70 525 aa19.06■□□□□ 0.64
CLN3-230ENST00000568076 MGAT4BQ9UQ53 548 aa19.06■□□□□ 0.64
CLN3-230ENST00000568076 LOC105369274A0A096LPK9 316 aa19.06■□□□□ 0.64
CLN3-230ENST00000568076 LOC102723532A0A0G2JNH3 316 aa19.06■□□□□ 0.64
CLN3-230ENST00000568076 A0A0G2JPF8 293 aa19.06■□□□□ 0.64
CLN3-230ENST00000568076 SH3PXD2BA1X283 911 aa19.06■□□□□ 0.64
CLN3-230ENST00000568076 HNRNPCL2B2RXH8 293 aa19.06■□□□□ 0.64
CLN3-230ENST00000568076 HNRNPCL3B7ZW38 293 aa19.06■□□□□ 0.64
CLN3-230ENST00000568076 SOX14O95416 240 aa19.06■□□□□ 0.64
CLN3-230ENST00000568076 LGI1O95970 557 aa19.06■□□□□ 0.64
CLN3-230ENST00000568076 CELA2BP08218 269 aaPredicted RBP19.06■□□□□ 0.64
CLN3-230ENST00000568076 STSP08842 583 aa19.06■□□□□ 0.64
CLN3-230ENST00000568076 HNRNPCL4P0DMR1 293 aa19.06■□□□□ 0.64
CLN3-230ENST00000568076 OSMP13725 252 aa19.06■□□□□ 0.64
CLN3-230ENST00000568076 LSSP48449 732 aa19.06■□□□□ 0.64
CLN3-230ENST00000568076 ANXA11P50995 505 aaKnown RBP19.06■□□□□ 0.64
CLN3-230ENST00000568076 BMXP51813 675 aa19.06■□□□□ 0.64
CLN3-230ENST00000568076 VBP1P61758 197 aa19.06■□□□□ 0.64
CLN3-230ENST00000568076 TNFRSF17Q02223 184 aa19.06■□□□□ 0.64
CLN3-230ENST00000568076 ILF3Q12906 894 aaKnown RBP eCLIP19.06■□□□□ 0.64
CLN3-230ENST00000568076 RUNX2Q13950 521 aa19.06■□□□□ 0.64
CLN3-230ENST00000568076 COL19A1Q14993 1142 aa19.06■□□□□ 0.64
CLN3-230ENST00000568076 DEFB134Q4QY38 66 aa19.06■□□□□ 0.64
CLN3-230ENST00000568076 ARHGAP22Q7Z5H3 698 aa19.06■□□□□ 0.64
CLN3-230ENST00000568076 ABI3BPQ7Z7G0 1075 aa19.06■□□□□ 0.64
CLN3-230ENST00000568076 OR4N4Q8N0Y3 316 aa19.06■□□□□ 0.64
CLN3-230ENST00000568076 SHISA5Q8N114 240 aa19.06■□□□□ 0.64
CLN3-230ENST00000568076 GPBAR1Q8TDU6 330 aa19.06■□□□□ 0.64
CLN3-230ENST00000568076 NECTIN3Q9NQS3 549 aa19.06■□□□□ 0.64
CLN3-230ENST00000568076 MAN2C1Q9NTJ4 1040 aa19.06■□□□□ 0.64
CLN3-230ENST00000568076 EVA1BQ9NVM1 165 aa19.06■□□□□ 0.64
CLN3-230ENST00000568076 MS4A12Q9NXJ0 267 aa19.06■□□□□ 0.64
CLN3-230ENST00000568076 MTCH2Q9Y6C9 303 aa19.06■□□□□ 0.64
CLN3-230ENST00000568076 ARHGEF17Q96PE2 2063 aaPredicted RBP19.05■□□□□ 0.64
CLN3-230ENST00000568076 A0A1W2PRQ8 180 aa19.05■□□□□ 0.64
CLN3-230ENST00000568076 M0R082 166 aa19.05■□□□□ 0.64
CLN3-230ENST00000568076 SLC22A1O15245 554 aa19.05■□□□□ 0.64
CLN3-230ENST00000568076 LIPAP38571 399 aa19.05■□□□□ 0.64
CLN3-230ENST00000568076 ZNF829Q3KNS6 432 aaPredicted RBP19.05■□□□□ 0.64
CLN3-230ENST00000568076 FBXO43Q4G163 708 aa19.05■□□□□ 0.64
CLN3-230ENST00000568076 WDR53Q7Z5U6 358 aaPredicted RBP19.05■□□□□ 0.64
CLN3-230ENST00000568076 TRIM48Q8IWZ4 208 aa19.05■□□□□ 0.64
CLN3-230ENST00000568076 RPL3LQ92901 407 aaKnown RBP19.05■□□□□ 0.64
CLN3-230ENST00000568076 ZG16BQ96DA0 208 aa19.05■□□□□ 0.64
CLN3-230ENST00000568076 HSPBAP1Q96EW2 488 aa19.05■□□□□ 0.64
CLN3-230ENST00000568076 SPATA5L1Q9BVQ7 753 aa19.05■□□□□ 0.64
CLN3-230ENST00000568076 SLC38A1Q9H2H9 487 aa19.05■□□□□ 0.64
CLN3-230ENST00000568076 C3orf14Q9HBI5 128 aa19.05■□□□□ 0.64
CLN3-230ENST00000568076 ANKMY1Q9P2S6 941 aa19.05■□□□□ 0.64
CLN3-230ENST00000568076 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP19.05■□□□□ 0.64
CLN3-230ENST00000568076 TPST2O60704 377 aa19.04■□□□□ 0.64
CLN3-230ENST00000568076 UGT2B17O75795 530 aa19.04■□□□□ 0.64
CLN3-230ENST00000568076 ADRA2AP08913 450 aa19.04■□□□□ 0.64
CLN3-230ENST00000568076 CD36P16671 472 aa19.04■□□□□ 0.64
CLN3-230ENST00000568076 CPN2P22792 545 aa19.04■□□□□ 0.64
CLN3-230ENST00000568076 BUD31P41223 144 aaPredicted RBP19.04■□□□□ 0.64
CLN3-230ENST00000568076 LSM11P83369 360 aaKnown RBP eCLIP19.04■□□□□ 0.64
CLN3-230ENST00000568076 OCA2Q04671 838 aa19.04■□□□□ 0.64
CLN3-230ENST00000568076 ILKQ13418 452 aa19.04■□□□□ 0.64
CLN3-230ENST00000568076 SUZ12Q15022 739 aaKnown RBP19.04■□□□□ 0.64
CLN3-230ENST00000568076 ZNF542PQ5EBM4 170 aa19.04■□□□□ 0.64
CLN3-230ENST00000568076 PODNL1Q6PEZ8 512 aa19.04■□□□□ 0.64
CLN3-230ENST00000568076 FAM111BQ6SJ93 734 aa19.04■□□□□ 0.64
CLN3-230ENST00000568076 Q6ZS52 159 aa19.04■□□□□ 0.64
CLN3-230ENST00000568076 CROCCP3Q8IVE0 287 aa19.04■□□□□ 0.64
CLN3-230ENST00000568076 B3GNT7Q8NFL0 401 aa19.04■□□□□ 0.64
CLN3-230ENST00000568076 OR7G2Q8NG99 324 aa19.04■□□□□ 0.64
CLN3-230ENST00000568076 FAM3CQ92520 227 aa19.04■□□□□ 0.64
CLN3-230ENST00000568076 FCGR1BQ92637 280 aa19.04■□□□□ 0.64
CLN3-230ENST00000568076 ITPAQ9BY32 194 aa19.04■□□□□ 0.64
CLN3-230ENST00000568076 ALOXE3Q9BYJ1 711 aa19.04■□□□□ 0.64
CLN3-230ENST00000568076 POLMQ9NP87 494 aaPredicted RBP19.04■□□□□ 0.64
CLN3-230ENST00000568076 C11orf16Q9NQ32 467 aa19.04■□□□□ 0.64
CLN3-230ENST00000568076 SLC9A8Q9Y2E8 581 aa19.04■□□□□ 0.64
CLN3-230ENST00000568076 MRPS2Q9Y399 296 aaKnown RBP19.04■□□□□ 0.64
CLN3-230ENST00000568076 ZIC2O95409 532 aaPredicted RBP19.04■□□□□ 0.64
CLN3-230ENST00000568076 TNFP01375 233 aa19.04■□□□□ 0.64
CLN3-230ENST00000568076 TP53P04637 393 aaPredicted RBP19.04■□□□□ 0.64
CLN3-230ENST00000568076 PVRP15151 417 aa19.04■□□□□ 0.64
CLN3-230ENST00000568076 RABIFP47224 123 aa19.04■□□□□ 0.64
CLN3-230ENST00000568076 SMIM11AP58511 58 aa19.04■□□□□ 0.64
CLN3-230ENST00000568076 NCS1P62166 190 aa19.04■□□□□ 0.64
CLN3-230ENST00000568076 CHRNEQ04844 493 aa19.04■□□□□ 0.64
CLN3-230ENST00000568076 ST3GAL4Q11206 333 aa19.04■□□□□ 0.64
CLN3-230ENST00000568076 GNA13Q14344 377 aa19.04■□□□□ 0.64
CLN3-230ENST00000568076 SYT16Q17RD7 645 aa19.04■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms