RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 ATP1B1P05026 303 aa14.71□□□□□ -0.05
CLN3-229ENST00000567963 ABCB1P08183 1280 aaPredicted RBP14.71□□□□□ -0.05
CLN3-229ENST00000567963 TSPAN8P19075 237 aa14.71□□□□□ -0.05
CLN3-229ENST00000567963 ECHS1P30084 290 aa14.71□□□□□ -0.05
CLN3-229ENST00000567963 DEKP35659 375 aaKnown RBP14.71□□□□□ -0.05
CLN3-229ENST00000567963 CDK9P50750 372 aaKnown RBP14.71□□□□□ -0.05
CLN3-229ENST00000567963 RIPPLY3P57055 190 aa14.71□□□□□ -0.05
CLN3-229ENST00000567963 RPP38P78345 283 aaKnown RBP14.71□□□□□ -0.05
CLN3-229ENST00000567963 MGAT2Q10469 447 aa14.71□□□□□ -0.05
CLN3-229ENST00000567963 FAM111BQ6SJ93 734 aa14.71□□□□□ -0.05
CLN3-229ENST00000567963 PRR22Q8IZ63 422 aa14.71□□□□□ -0.05
CLN3-229ENST00000567963 VWA5B2Q8N398 1253 aa14.71□□□□□ -0.05
CLN3-229ENST00000567963 TM4SF18Q96CE8 201 aa14.71□□□□□ -0.05
CLN3-229ENST00000567963 TMEM41AQ96HV5 264 aa14.71□□□□□ -0.05
CLN3-229ENST00000567963 C16orf45Q96MC5 204 aaPredicted RBP14.71□□□□□ -0.05
CLN3-229ENST00000567963 BRINP2Q9C0B6 783 aa14.71□□□□□ -0.05
CLN3-229ENST00000567963 NXF5Q9H1B4 397 aaKnown RBP14.71□□□□□ -0.05
CLN3-229ENST00000567963 ZNF639Q9UID6 485 aa14.71□□□□□ -0.05
CLN3-229ENST00000567963 SNX6Q9UNH7 406 aa14.71□□□□□ -0.05
CLN3-229ENST00000567963 SPG11Q96JI7 2443 aa14.71□□□□□ -0.05
CLN3-229ENST00000567963 A8MT66 165 aa14.7□□□□□ -0.06
CLN3-229ENST00000567963 KDM4EB2RXH2 506 aaPredicted RBP14.7□□□□□ -0.06
CLN3-229ENST00000567963 SYT5O00445 386 aa14.7□□□□□ -0.06
CLN3-229ENST00000567963 ERAL1O75616 437 aaKnown RBP14.7□□□□□ -0.06
CLN3-229ENST00000567963 NAGAP17050 411 aa14.7□□□□□ -0.06
CLN3-229ENST00000567963 CSNK2A2P19784 350 aaPredicted RBP14.7□□□□□ -0.06
CLN3-229ENST00000567963 CEACAM8P31997 349 aaPredicted RBP14.7□□□□□ -0.06
CLN3-229ENST00000567963 TIMP3P35625 211 aa14.7□□□□□ -0.06
CLN3-229ENST00000567963 SOX18P35713 384 aa14.7□□□□□ -0.06
CLN3-229ENST00000567963 FEN1P39748 380 aaKnown RBP14.7□□□□□ -0.06
CLN3-229ENST00000567963 MASP1P48740 699 aa14.7□□□□□ -0.06
CLN3-229ENST00000567963 ACSF3Q4G176 576 aaPredicted RBP14.7□□□□□ -0.06
CLN3-229ENST00000567963 NHSL2Q5HYW2 709 aa14.7□□□□□ -0.06
CLN3-229ENST00000567963 VASNQ6EMK4 673 aa14.7□□□□□ -0.06
CLN3-229ENST00000567963 MMP21Q8N119 569 aa14.7□□□□□ -0.06
CLN3-229ENST00000567963 NOA1Q8NC60 698 aaKnown RBP14.7□□□□□ -0.06
CLN3-229ENST00000567963 NAXEQ8NCW5 288 aa14.7□□□□□ -0.06
CLN3-229ENST00000567963 TNIP2Q8NFZ5 429 aa14.7□□□□□ -0.06
CLN3-229ENST00000567963 UHMK1Q8TAS1 419 aaKnown RBP14.7□□□□□ -0.06
CLN3-229ENST00000567963 CTHRC1Q96CG8 243 aa14.7□□□□□ -0.06
CLN3-229ENST00000567963 PRDM14Q9GZV8 571 aa14.7□□□□□ -0.06
CLN3-229ENST00000567963 NMRK1Q9NWW6 199 aa14.7□□□□□ -0.06
CLN3-229ENST00000567963 MAT2BQ9NZL9 334 aa14.7□□□□□ -0.06
CLN3-229ENST00000567963 PSME2Q9UL46 239 aa14.7□□□□□ -0.06
CLN3-229ENST00000567963 CFL2Q9Y281 166 aa14.7□□□□□ -0.06
CLN3-229ENST00000567963 C15orf41Q9Y2V0 281 aa14.7□□□□□ -0.06
CLN3-229ENST00000567963 ZFHX3Q15911 3703 aa14.7□□□□□ -0.06
CLN3-229ENST00000567963 A0A087WUV0 522 aaPredicted RBP14.69□□□□□ -0.06
CLN3-229ENST00000567963 CDH16O75309 829 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 PPM1BO75688 479 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 SNRPAP09012 282 aaKnown RBP14.69□□□□□ -0.06
CLN3-229ENST00000567963 KRT15P19012 456 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 BMP5P22003 454 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 DNAJA1P31689 397 aaKnown RBP14.69□□□□□ -0.06
CLN3-229ENST00000567963 HSD17B3P37058 310 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 SNTB1Q13884 538 aaKnown RBP14.69□□□□□ -0.06
CLN3-229ENST00000567963 EXOSC7Q15024 291 aaKnown RBP14.69□□□□□ -0.06
CLN3-229ENST00000567963 FAM219BQ5XKK7 198 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 TIGD3Q6B0B8 471 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 TMEM81Q6P7N7 255 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 LACC1Q8IV20 430 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 PM20D2Q8IYS1 436 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 RELL2Q8NC24 303 aaPredicted RBP14.69□□□□□ -0.06
CLN3-229ENST00000567963 SIMC1Q8NDZ2 872 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 NRGNQ92686 78 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 HSPBAP1Q96EW2 488 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 ZNF629Q9UEG4 869 aaPredicted RBP14.69□□□□□ -0.06
CLN3-229ENST00000567963 TRPS1Q9UHF7 1281 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 BCAP29Q9UHQ4 241 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 SLC6A5Q9Y345 797 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 DVL2O14641 736 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 GNB5O14775 395 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 CTAG2O75638 210 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 OR4F21O95013 312 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 IL2RAP01589 272 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 CD1EP15812 388 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 BMP7P18075 431 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 PTPN6P29350 595 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 PEX19P40855 299 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 KIR2DL3P43628 341 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 WNT3P56703 355 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 TRA2BP62995 288 aaKnown RBP14.69□□□□□ -0.06
CLN3-229ENST00000567963 CLCQ05315 142 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 DUSP2Q05923 314 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 TOMM20Q15388 145 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 SF3B4Q15427 424 aaKnown RBP eCLIP14.69□□□□□ -0.062e-7■■■■□ 24.8
CLN3-229ENST00000567963 NNATQ16517 81 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 GLE1Q53GS7 698 aaKnown RBP14.69□□□□□ -0.06
CLN3-229ENST00000567963 TRMT12Q53H54 448 aaKnown RBP14.69□□□□□ -0.06
CLN3-229ENST00000567963 EIPR1Q53HC9 387 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 TEX35Q5T0J7 233 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 DESI1Q6ICB0 168 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 FAM180BQ6P0A1 224 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 POMZP3Q6PJE2 187 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 NUP54Q7Z3B4 507 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 ZZZ3Q8IYH5 903 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 C1orf52Q8N6N3 182 aaKnown RBP14.69□□□□□ -0.06
CLN3-229ENST00000567963 ADCY4Q8NFM4 1077 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 OR1J4Q8NGS1 313 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 HGDQ93099 445 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms