RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 SLC6A16Q9GZN6 736 aa12.53□□□□□ -0.4
VPS4A-204ENST00000566354 MIEF1Q9NQG6 463 aa12.53□□□□□ -0.4
VPS4A-204ENST00000566354 SNTG1Q9NSN8 517 aa12.53□□□□□ -0.4
VPS4A-204ENST00000566354 CLEC2DQ9UHP7 191 aa12.53□□□□□ -0.4
VPS4A-204ENST00000566354 SSR3Q9UNL2 185 aa12.53□□□□□ -0.4
VPS4A-204ENST00000566354 NUMA1Q14980 2115 aa12.52□□□□□ -0.4
VPS4A-204ENST00000566354 IQCMA0A1B0GVH7 501 aa12.52□□□□□ -0.41
VPS4A-204ENST00000566354 CENPXA8MT69 81 aa12.52□□□□□ -0.41
VPS4A-204ENST00000566354 CYP7B1O75881 506 aa12.52□□□□□ -0.41
VPS4A-204ENST00000566354 SEMA3DO95025 777 aa12.52□□□□□ -0.41
VPS4A-204ENST00000566354 MFN2O95140 757 aa12.52□□□□□ -0.41
VPS4A-204ENST00000566354 RFX2P48378 723 aa12.52□□□□□ -0.41
VPS4A-204ENST00000566354 PSPHP78330 225 aa12.52□□□□□ -0.41
VPS4A-204ENST00000566354 TDGQ13569 410 aa12.52□□□□□ -0.41
VPS4A-204ENST00000566354 TSTA3Q13630 321 aaPredicted RBP12.52□□□□□ -0.41
VPS4A-204ENST00000566354 C1DQ13901 141 aaKnown RBP12.52□□□□□ -0.41
VPS4A-204ENST00000566354 PRSS53Q2L4Q9 553 aa12.52□□□□□ -0.41
VPS4A-204ENST00000566354 ZFP69Q49AA0 526 aa12.52□□□□□ -0.41
VPS4A-204ENST00000566354 DCST1Q5T197 706 aa12.52□□□□□ -0.41
VPS4A-204ENST00000566354 C12orf73Q69YU5 71 aa12.52□□□□□ -0.41
VPS4A-204ENST00000566354 CEACAM20Q6UY09 585 aa12.52□□□□□ -0.41
VPS4A-204ENST00000566354 TECPR1Q7Z6L1 1165 aa12.52□□□□□ -0.41
VPS4A-204ENST00000566354 TTC9Q92623 222 aa12.52□□□□□ -0.41
VPS4A-204ENST00000566354 NEDD4LQ96PU5 975 aa12.52□□□□□ -0.41
VPS4A-204ENST00000566354 POLR2J2Q9GZM3 115 aaKnown RBP12.52□□□□□ -0.41
VPS4A-204ENST00000566354 DDX28Q9NUL7 540 aaKnown RBP12.52□□□□□ -0.41
VPS4A-204ENST00000566354 DNAJC27Q9NZQ0 273 aa12.52□□□□□ -0.41
VPS4A-204ENST00000566354 SH2B3Q9UQQ2 575 aa12.52□□□□□ -0.41
VPS4A-204ENST00000566354 FAM227AF5H4B4 570 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 FAAHO00519 579 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 IL3P08700 152 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 TRAPPC2P0DI81 140 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 TRAPPC2BP0DI82 140 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 SRFP11831 508 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 POLR2CP19387 275 aaPredicted RBP12.51□□□□□ -0.41
VPS4A-204ENST00000566354 NTSR1P30989 418 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 MMP12P39900 470 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 DGKEP52429 567 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 SCN1BQ07699 218 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 MLLT11Q13015 90 aaPredicted RBP12.51□□□□□ -0.41
VPS4A-204ENST00000566354 ZNF79Q15937 498 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 BAK1Q16611 211 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 OCLNQ16625 522 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 NXPE4Q6UWF7 544 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 RFPL4BQ6ZWI9 263 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 C11orf96Q7Z7L8 435 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 LILRB2Q8N423 598 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 SLC38A5Q8WUX1 472 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 UBE2E3Q969T4 207 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 ST6GAL2Q96JF0 529 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 TEFMQ96QE5 360 aaKnown RBP12.51□□□□□ -0.41
VPS4A-204ENST00000566354 SRRQ9GZT4 340 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 SERHL2Q9H4I8 314 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 EPHX3Q9H6B9 360 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 A4GALTQ9NPC4 353 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 TAAR2Q9P1P5 351 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 CMAHPQ9Y471 501 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 SNX11Q9Y5W9 270 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 B8ZZF3 427 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 H3BN98 237 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 CACNB4O00305 520 aaPredicted RBP12.51□□□□□ -0.41
VPS4A-204ENST00000566354 MID1O15344 667 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 OR10H3O60404 316 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 TPST2O60704 377 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 GUCY1B2O75343 617 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 KLF8O95600 359 aaPredicted RBP12.51□□□□□ -0.41
VPS4A-204ENST00000566354 LGI1O95970 557 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 IL7P13232 177 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 ADRB3P13945 408 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 BTF3P20290 206 aaKnown RBP12.51□□□□□ -0.41
VPS4A-204ENST00000566354 DRD1P21728 446 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 ELAVL4P26378 380 aaKnown RBP12.51□□□□□ -0.41
VPS4A-204ENST00000566354 PBLDP30039 288 aaPredicted RBP12.51□□□□□ -0.41
VPS4A-204ENST00000566354 FEN1P39748 380 aaKnown RBP12.51□□□□□ -0.41
VPS4A-204ENST00000566354 RPS5P46782 204 aaKnown RBP12.51□□□□□ -0.41
VPS4A-204ENST00000566354 XKP51811 444 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 ZNF91Q05481 1191 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 LARS2Q15031 903 aaKnown RBP12.51□□□□□ -0.41
VPS4A-204ENST00000566354 TCTN3Q6NUS6 607 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 ERAP2Q6P179 960 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 DPPA4Q7L190 304 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 GATAD2AQ86YP4 633 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 LAX1Q8IWV1 398 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 SLC5A11Q8WWX8 675 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 NEURL3Q96EH8 262 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 PHOX2BQ99453 314 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 MKRN2Q9H000 416 aaKnown RBP12.51□□□□□ -0.41
VPS4A-204ENST00000566354 POLR2J3Q9H1A7 115 aaKnown RBP12.51□□□□□ -0.41
VPS4A-204ENST00000566354 SLC6A17Q9H1V8 727 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 CXorf36Q9H7Y0 433 aa12.51□□□□□ -0.41
VPS4A-204ENST00000566354 DOCK9Q9BZ29 2069 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 HMX3A6NHT5 357 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 C1QTNF3-AMACRE9PGA6 284 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 PDE9AO76083 593 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 H1F0P07305 194 aaKnown RBP12.5□□□□□ -0.41
VPS4A-204ENST00000566354 HBQ1P09105 142 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 COL9A1P20849 921 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 IFNA8P32881 189 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 DRD3P35462 400 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 P2RY2P41231 377 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms