RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 ERAL1O75616 437 aaKnown RBP13.64□□□□□ -0.23
CLN3-213ENST00000565047 LRATO95237 230 aa13.64□□□□□ -0.23
CLN3-213ENST00000565047 ENO1P06733 434 aaKnown RBP13.64□□□□□ -0.23
CLN3-213ENST00000565047 ABCB1P08183 1280 aaPredicted RBP13.64□□□□□ -0.23
CLN3-213ENST00000565047 ABCD3P28288 659 aa13.64□□□□□ -0.23
CLN3-213ENST00000565047 CRHR1P34998 444 aa13.64□□□□□ -0.23
CLN3-213ENST00000565047 NUP107P57740 925 aa13.64□□□□□ -0.23
CLN3-213ENST00000565047 DNAJB13P59910 316 aa13.64□□□□□ -0.23
CLN3-213ENST00000565047 HMGCS1Q01581 520 aa13.64□□□□□ -0.23
CLN3-213ENST00000565047 RPS6KA2Q15349 733 aa13.64□□□□□ -0.23
CLN3-213ENST00000565047 ZNF628Q5EBL2 1059 aa13.64□□□□□ -0.23
CLN3-213ENST00000565047 DESI1Q6ICB0 168 aa13.64□□□□□ -0.23
CLN3-213ENST00000565047 TRIM46Q7Z4K8 759 aa13.64□□□□□ -0.23
CLN3-213ENST00000565047 FAM13CQ8NE31 585 aa13.64□□□□□ -0.23
CLN3-213ENST00000565047 ADCY4Q8NFM4 1077 aa13.64□□□□□ -0.23
CLN3-213ENST00000565047 OR5M9Q8NGP3 310 aa13.64□□□□□ -0.23
CLN3-213ENST00000565047 OR5M3Q8NGP4 307 aa13.64□□□□□ -0.23
CLN3-213ENST00000565047 ZNF675Q8TD23 568 aa13.64□□□□□ -0.23
CLN3-213ENST00000565047 HGDQ93099 445 aa13.64□□□□□ -0.23
CLN3-213ENST00000565047 SDCCAG3Q96C92 435 aa13.64□□□□□ -0.23
CLN3-213ENST00000565047 TTYH2Q9BSA4 534 aa13.64□□□□□ -0.23
CLN3-213ENST00000565047 C12orf65Q9H3J6 166 aaKnown RBP13.64□□□□□ -0.23
CLN3-213ENST00000565047 ANKZF1Q9H8Y5 726 aa13.64□□□□□ -0.23
CLN3-213ENST00000565047 EXO1Q9UQ84 846 aaKnown RBP13.64□□□□□ -0.23
CLN3-213ENST00000565047 DLGAP4Q9Y2H0 992 aa13.64□□□□□ -0.23
CLN3-213ENST00000565047 CCL27Q9Y4X3 112 aa13.64□□□□□ -0.23
CLN3-213ENST00000565047 CACNA1CQ13936 2221 aa13.64□□□□□ -0.23
CLN3-213ENST00000565047 PHF3Q92576 2039 aaKnown RBP13.63□□□□□ -0.23
CLN3-213ENST00000565047 GOLGA6L10A6NI86 522 aa13.63□□□□□ -0.23
CLN3-213ENST00000565047 TO15178 435 aa13.63□□□□□ -0.23
CLN3-213ENST00000565047 PCDH7O60245 1069 aa13.63□□□□□ -0.23
CLN3-213ENST00000565047 GLRA3O75311 464 aa13.63□□□□□ -0.23
CLN3-213ENST00000565047 TOXO94900 526 aa13.63□□□□□ -0.23
CLN3-213ENST00000565047 IL3P08700 152 aa13.63□□□□□ -0.23
CLN3-213ENST00000565047 GLI4P10075 376 aa13.63□□□□□ -0.23
CLN3-213ENST00000565047 DRD2P14416 443 aa13.63□□□□□ -0.23
CLN3-213ENST00000565047 PCSK2P16519 638 aa13.63□□□□□ -0.23
CLN3-213ENST00000565047 NAGAP17050 411 aa13.63□□□□□ -0.23
CLN3-213ENST00000565047 ACVR2AP27037 513 aa13.63□□□□□ -0.23
CLN3-213ENST00000565047 PTGDSP41222 190 aa13.63□□□□□ -0.23
CLN3-213ENST00000565047 CASP3P42574 277 aa13.63□□□□□ -0.23
CLN3-213ENST00000565047 NAGLUP54802 743 aa13.63□□□□□ -0.23
CLN3-213ENST00000565047 KCNJ2P63252 427 aa13.63□□□□□ -0.23
CLN3-213ENST00000565047 SLC18A2Q05940 514 aa13.63□□□□□ -0.23
CLN3-213ENST00000565047 PMPCAQ10713 525 aa13.63□□□□□ -0.23
CLN3-213ENST00000565047 EXOSC7Q15024 291 aaKnown RBP13.63□□□□□ -0.23
CLN3-213ENST00000565047 SPIN4Q56A73 249 aa13.63□□□□□ -0.23
CLN3-213ENST00000565047 TBCELQ5QJ74 424 aa13.63□□□□□ -0.23
CLN3-213ENST00000565047 TMEM81Q6P7N7 255 aa13.63□□□□□ -0.23
CLN3-213ENST00000565047 FRMD7Q6ZUT3 714 aa13.63□□□□□ -0.23
CLN3-213ENST00000565047 C16orf78Q8WTQ4 265 aa13.63□□□□□ -0.23
CLN3-213ENST00000565047 RND1Q92730 232 aa13.63□□□□□ -0.23
CLN3-213ENST00000565047 KLHL29Q96CT2 875 aa13.63□□□□□ -0.23
CLN3-213ENST00000565047 CCDC126Q96EE4 140 aa13.63□□□□□ -0.23
CLN3-213ENST00000565047 DOHHQ9BU89 302 aa13.63□□□□□ -0.23
CLN3-213ENST00000565047 FAIM2Q9BWQ8 316 aa13.63□□□□□ -0.23
CLN3-213ENST00000565047 ITPAQ9BY32 194 aa13.63□□□□□ -0.23
CLN3-213ENST00000565047 PPCSQ9HAB8 311 aa13.63□□□□□ -0.23
CLN3-213ENST00000565047 MID1IP1Q9NPA3 183 aa13.63□□□□□ -0.23
CLN3-213ENST00000565047 NPDC1Q9NQX5 325 aaPredicted RBP13.63□□□□□ -0.23
CLN3-213ENST00000565047 OXSMQ9NWU1 459 aa13.63□□□□□ -0.23
CLN3-213ENST00000565047 UTS2RQ9UKP6 389 aa13.63□□□□□ -0.23
CLN3-213ENST00000565047 PSME2Q9UL46 239 aa13.63□□□□□ -0.23
CLN3-213ENST00000565047 BOKQ9UMX3 212 aaPredicted RBP13.63□□□□□ -0.23
CLN3-213ENST00000565047 STK38LQ9Y2H1 464 aa13.63□□□□□ -0.23
CLN3-213ENST00000565047 PLLPQ9Y342 182 aa13.63□□□□□ -0.23
CLN3-213ENST00000565047 PKDREJQ9NTG1 2253 aa13.63□□□□□ -0.23
CLN3-213ENST00000565047 MYO9AB2RTY4 2548 aa13.63□□□□□ -0.23
CLN3-213ENST00000565047 OTOGQ6ZRI0 2925 aa13.62□□□□□ -0.23
CLN3-213ENST00000565047 EXPH5Q8NEV8 1989 aa13.62□□□□□ -0.23
CLN3-213ENST00000565047 TRGV5A0A0B4J1U4 118 aa13.62□□□□□ -0.23
CLN3-213ENST00000565047 PPM1BO75688 479 aa13.62□□□□□ -0.23
CLN3-213ENST00000565047 SNX4O95219 450 aa13.62□□□□□ -0.23
CLN3-213ENST00000565047 COX6B1P14854 86 aa13.62□□□□□ -0.23
CLN3-213ENST00000565047 DRD5P21918 477 aa13.62□□□□□ -0.23
CLN3-213ENST00000565047 HMOX2P30519 316 aa13.62□□□□□ -0.23
CLN3-213ENST00000565047 CHRNB4P30926 498 aa13.62□□□□□ -0.23
CLN3-213ENST00000565047 TIA1P31483 386 aaKnown RBP eCLIP13.62□□□□□ -0.23
CLN3-213ENST00000565047 DEKP35659 375 aaKnown RBP13.62□□□□□ -0.23
CLN3-213ENST00000565047 SLCO1A2P46721 670 aa13.62□□□□□ -0.23
CLN3-213ENST00000565047 MAN2A2P49641 1150 aa13.62□□□□□ -0.23
CLN3-213ENST00000565047 MRPS35P82673 323 aaKnown RBP13.62□□□□□ -0.23
CLN3-213ENST00000565047 KIAA0040Q15053 153 aa13.62□□□□□ -0.23
CLN3-213ENST00000565047 CCDC153Q494R4 210 aa13.62□□□□□ -0.23
CLN3-213ENST00000565047 SCIMPQ6UWF3 145 aa13.62□□□□□ -0.23
CLN3-213ENST00000565047 SEM1Q6ZVN7 128 aa13.62□□□□□ -0.23
CLN3-213ENST00000565047 CCDC71Q8IV32 467 aaPredicted RBP13.62□□□□□ -0.23
CLN3-213ENST00000565047 SRRM1Q8IYB3 904 aaKnown RBP13.62□□□□□ -0.23
CLN3-213ENST00000565047 CCDC116Q8IYX3 515 aa13.62□□□□□ -0.23
CLN3-213ENST00000565047 PRR22Q8IZ63 422 aa13.62□□□□□ -0.23
CLN3-213ENST00000565047 OR52R1Q8NGF1 315 aa13.62□□□□□ -0.23
CLN3-213ENST00000565047 NEIL3Q8TAT5 605 aa13.62□□□□□ -0.23
CLN3-213ENST00000565047 EPS8L3Q8TE67 593 aaKnown RBP13.62□□□□□ -0.23
CLN3-213ENST00000565047 CA5BP1Q8WTZ4 195 aa13.62□□□□□ -0.23
CLN3-213ENST00000565047 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.62□□□□□ -0.23
CLN3-213ENST00000565047 DIO2Q92813 273 aa13.62□□□□□ -0.23
CLN3-213ENST00000565047 TRIM44Q96DX7 344 aaPredicted RBP13.62□□□□□ -0.23
CLN3-213ENST00000565047 LCORQ96JN0 433 aaPredicted RBP13.62□□□□□ -0.23
CLN3-213ENST00000565047 RILPQ96NA2 401 aa13.62□□□□□ -0.23
CLN3-213ENST00000565047 UCK2Q9BZX2 261 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms