RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 EML6Q6ZMW3 1958 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 CPAMD8Q8IZJ3 1885 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 TRBV11-1A0A0K0K1C0 115 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 C2orf92A0A1B0GVN3 265 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 DUXAA6NLW8 204 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 CAPN14A8MX76 684 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 SCN2BO60939 215 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 KCNH1O95259 989 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 DDAH2O95865 285 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 AGR2O95994 175 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 ALPPP05187 535 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 ABCB1P08183 1280 aaPredicted RBP8.59□□□□□ -1.03
LDLR-210ENST00000559340 ZCCHC18P0CG32 403 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 WT1P19544 449 aaPredicted RBP8.59□□□□□ -1.03
LDLR-210ENST00000559340 SOAT1P35610 550 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 CHI3L1P36222 383 aaPredicted RBP8.59□□□□□ -1.03
LDLR-210ENST00000559340 CCL11P51671 97 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 GPR143P51810 404 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 EFNA3P52797 238 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 MGAT2Q10469 447 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 CHAF1BQ13112 559 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 UBAP2LQ14157 1087 aaKnown RBP8.59□□□□□ -1.03
LDLR-210ENST00000559340 MYBPC3Q14896 1274 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 MEP1AQ16819 746 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 PRSS53Q2L4Q9 553 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 MPEG1Q2M385 716 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 VPS26BQ4G0F5 336 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 TIGD2Q4W5G0 525 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 C6orf10Q5SRN2 563 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 AGAP7PQ5VUJ5 663 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 FAM180BQ6P0A1 224 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 TMEM107Q6UX40 140 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 ZNF621Q6ZSS3 439 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 GPR155Q7Z3F1 870 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 TAGAPQ8N103 731 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 GALNT16Q8N428 558 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 SLC15A4Q8N697 577 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 C17orf47Q8NEP4 570 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 NUP43Q8NFH3 380 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 NUBPLQ8TB37 319 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 ELP5Q8TE02 316 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 TP53INP1Q96A56 240 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 THOC3Q96J01 351 aaKnown RBP8.59□□□□□ -1.03
LDLR-210ENST00000559340 MAGED4Q96JG8 741 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 AGAP4Q96P64 663 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 PHF12Q96QT6 1004 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 NUDT9Q9BW91 350 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 CCDC106Q9BWC9 280 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 MYLK2Q9H1R3 596 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 EFCAB1Q9HAE3 211 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 CPNE5Q9HCH3 593 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 ZCCHC3Q9NUD5 404 aaKnown RBP8.59□□□□□ -1.03
LDLR-210ENST00000559340 NTMQ9P121 344 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 MRTO4Q9UKD2 239 aaKnown RBP8.59□□□□□ -1.03
LDLR-210ENST00000559340 FAF1Q9UNN5 650 aaPredicted RBP8.59□□□□□ -1.03
LDLR-210ENST00000559340 CORO2BQ9UQ03 480 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 PCDHGB7Q9Y5F8 929 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 PCDHGB3Q9Y5G1 929 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 KCNMB2Q9Y691 235 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 ASPMQ8IZT6 3477 aa8.59□□□□□ -1.03
LDLR-210ENST00000559340 A0A096LPI6 279 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 LOC100653049A0A140TA62 436 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 A0A1W2PS29 197 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 A8MUI8 341 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 EVPLLA8MZ36 301 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 MKRN2OSH3BPM6 223 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 ZZEF1O43149 2961 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 KRT34O76011 436 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 IGKV3-11P04433 115 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 CT62P0C5K7 136 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 COX4I1P13073 169 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 EFNA1P20827 205 aaPredicted RBP8.58□□□□□ -1.04
LDLR-210ENST00000559340 S1PR1P21453 382 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 SSTR4P31391 388 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 MC3RP41968 323 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 PPICP45877 212 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 CDK9P50750 372 aaKnown RBP8.58□□□□□ -1.04
LDLR-210ENST00000559340 PRKAG1P54619 331 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 NRG3P56975 720 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 SLC37A1P57057 533 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 HBA1P69905 142 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 RNF4P78317 190 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 PHC1P78364 1004 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 MRPS35P82673 323 aaKnown RBP8.58□□□□□ -1.04
LDLR-210ENST00000559340 RHDQ02161 417 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 DUSP2Q05923 314 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 ART3Q13508 389 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 KRT72Q14CN4 511 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 TLR1Q15399 786 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 LTB4RQ15722 352 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 TRMT12Q53H54 448 aaKnown RBP8.58□□□□□ -1.04
LDLR-210ENST00000559340 CRB2Q5IJ48 1285 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 ATP1A1-AS1Q5TC04 95 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 ABHD17BQ5VST6 288 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 FAM91A1Q658Y4 838 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 H3F3CQ6NXT2 135 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 DGAT2L6Q6ZPD8 337 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 GK5Q6ZS86 529 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 SZRD1Q7Z422 152 aa8.58□□□□□ -1.04
LDLR-210ENST00000559340 ANKRD46Q86W74 232 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms