RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 CLUP10909 449 aa4.24□□□□□ -1.73
SCFD1-209ENST00000553280 ZNF26P17031 533 aaPredicted RBP4.24□□□□□ -1.73
SCFD1-209ENST00000553280 TSPAN8P19075 237 aa4.24□□□□□ -1.73
SCFD1-209ENST00000553280 AOC1P19801 751 aa4.24□□□□□ -1.73
SCFD1-209ENST00000553280 PGFP49763 221 aa4.24□□□□□ -1.73
SCFD1-209ENST00000553280 NAPAP54920 295 aa4.24□□□□□ -1.73
SCFD1-209ENST00000553280 MRPS6P82932 125 aaKnown RBP4.24□□□□□ -1.73
SCFD1-209ENST00000553280 SRYQ05066 204 aa4.24□□□□□ -1.73
SCFD1-209ENST00000553280 EXOSC2Q13868 293 aaKnown RBP4.24□□□□□ -1.73
SCFD1-209ENST00000553280 KIAA0141Q14154 515 aaPredicted RBP4.24□□□□□ -1.73
SCFD1-209ENST00000553280 UPP1Q16831 310 aa4.24□□□□□ -1.73
SCFD1-209ENST00000553280 KNOP1Q1ED39 458 aaKnown RBP4.24□□□□□ -1.73
SCFD1-209ENST00000553280 SPATA46Q5T0L3 261 aa4.24□□□□□ -1.73
SCFD1-209ENST00000553280 ATAD3BQ5T9A4 648 aa4.24□□□□□ -1.73
SCFD1-209ENST00000553280 CASC1Q6TDU7 716 aa4.24□□□□□ -1.73
SCFD1-209ENST00000553280 LCLAT1Q6UWP7 414 aa4.24□□□□□ -1.73
SCFD1-209ENST00000553280 WASH2PQ6VEQ5 465 aa4.24□□□□□ -1.73
SCFD1-209ENST00000553280 C18orf65Q6ZTR6 163 aa4.24□□□□□ -1.73
SCFD1-209ENST00000553280 LPCAT2Q7L5N7 544 aa4.24□□□□□ -1.73
SCFD1-209ENST00000553280 NOTCH2NLQ7Z3S9 236 aa4.24□□□□□ -1.73
SCFD1-209ENST00000553280 FAM133AQ8N9E0 248 aa4.24□□□□□ -1.73
SCFD1-209ENST00000553280 OR52M1Q8NGK5 317 aa4.24□□□□□ -1.73
SCFD1-209ENST00000553280 OR1K1Q8NGR3 316 aa4.24□□□□□ -1.73
SCFD1-209ENST00000553280 SPPL2AQ8TCT8 520 aa4.24□□□□□ -1.73
SCFD1-209ENST00000553280 VPS35Q96QK1 796 aa4.24□□□□□ -1.73
SCFD1-209ENST00000553280 TSPAN18Q96SJ8 248 aa4.24□□□□□ -1.73
SCFD1-209ENST00000553280 TMEM117Q9H0C3 514 aa4.24□□□□□ -1.73
SCFD1-209ENST00000553280 KAT8Q9H7Z6 458 aaKnown RBP4.24□□□□□ -1.73
SCFD1-209ENST00000553280 Q9HAA7 133 aa4.24□□□□□ -1.73
SCFD1-209ENST00000553280 WDR41Q9HAD4 459 aa4.24□□□□□ -1.73
SCFD1-209ENST00000553280 LPAR2Q9HBW0 351 aa4.24□□□□□ -1.73
SCFD1-209ENST00000553280 FGF22Q9HCT0 170 aa4.24□□□□□ -1.73
SCFD1-209ENST00000553280 NRN1Q9NPD7 142 aa4.24□□□□□ -1.73
SCFD1-209ENST00000553280 SPHK2Q9NRA0 654 aa4.24□□□□□ -1.73
SCFD1-209ENST00000553280 AGPAT5Q9NUQ2 364 aa4.24□□□□□ -1.73
SCFD1-209ENST00000553280 GPR83Q9NYM4 423 aa4.24□□□□□ -1.73
SCFD1-209ENST00000553280 CHRNA9Q9UGM1 479 aa4.24□□□□□ -1.73
SCFD1-209ENST00000553280 IKZF3Q9UKT9 509 aa4.24□□□□□ -1.73
SCFD1-209ENST00000553280 FZR1Q9UM11 496 aa4.24□□□□□ -1.73
SCFD1-209ENST00000553280 B9D1Q9UPM9 204 aa4.24□□□□□ -1.73
SCFD1-209ENST00000553280 MRPS28Q9Y2Q9 187 aaKnown RBP4.24□□□□□ -1.73
SCFD1-209ENST00000553280 MRPS7Q9Y2R9 242 aaKnown RBP4.24□□□□□ -1.73
SCFD1-209ENST00000553280 KLF2Q9Y5W3 355 aaPredicted RBP4.24□□□□□ -1.73
SCFD1-209ENST00000553280 IKBKGQ9Y6K9 419 aa4.24□□□□□ -1.73
SCFD1-209ENST00000553280 DDX49Q9Y6V7 483 aaKnown RBP4.24□□□□□ -1.73
SCFD1-209ENST00000553280 SCN5AQ14524 2016 aa4.24□□□□□ -1.73
SCFD1-209ENST00000553280 SF3B1O75533 1304 aaKnown RBP eCLIP4.23□□□□□ -1.73
SCFD1-209ENST00000553280 IGHV3-38A0A0C4DH36 116 aa4.23□□□□□ -1.73
SCFD1-209ENST00000553280 TRBV5-4A0A0C4DH59 114 aa4.23□□□□□ -1.73
SCFD1-209ENST00000553280 TRIM64CA6NLI5 447 aa4.23□□□□□ -1.73
SCFD1-209ENST00000553280 FBP2O00757 339 aa4.23□□□□□ -1.73
SCFD1-209ENST00000553280 IMPA2O14732 288 aa4.23□□□□□ -1.73
SCFD1-209ENST00000553280 MAGEB3O15480 346 aa4.23□□□□□ -1.73
SCFD1-209ENST00000553280 RIPK2O43353 540 aa4.23□□□□□ -1.73
SCFD1-209ENST00000553280 ZNF432O94892 652 aa4.23□□□□□ -1.73
SCFD1-209ENST00000553280 TOXO94900 526 aa4.23□□□□□ -1.73
SCFD1-209ENST00000553280 ECDO95905 644 aaPredicted RBP4.23□□□□□ -1.73
SCFD1-209ENST00000553280 ANXA4P09525 319 aaPredicted RBP4.23□□□□□ -1.73
SCFD1-209ENST00000553280 ACADVLP49748 655 aa4.23□□□□□ -1.73
SCFD1-209ENST00000553280 GBX2P52951 348 aaPredicted RBP4.23□□□□□ -1.73
SCFD1-209ENST00000553280 ACTR1AP61163 376 aa4.23□□□□□ -1.73
SCFD1-209ENST00000553280 CDKN3Q16667 212 aa4.23□□□□□ -1.73
SCFD1-209ENST00000553280 CEP55Q53EZ4 464 aa4.23□□□□□ -1.73
SCFD1-209ENST00000553280 ASPHD2Q6ICH7 369 aa4.23□□□□□ -1.73
SCFD1-209ENST00000553280 LEG1Q6P5S2 330 aa4.23□□□□□ -1.73
SCFD1-209ENST00000553280 ZNF562Q6V9R5 426 aa4.23□□□□□ -1.73
SCFD1-209ENST00000553280 CENPUQ71F23 418 aa4.23□□□□□ -1.73
SCFD1-209ENST00000553280 P4HA3Q7Z4N8 544 aa4.23□□□□□ -1.73
SCFD1-209ENST00000553280 NET1Q7Z628 596 aaPredicted RBP4.23□□□□□ -1.73
SCFD1-209ENST00000553280 VASH2Q86V25 355 aa4.23□□□□□ -1.73
SCFD1-209ENST00000553280 OR52B6Q8NGF0 335 aa4.23□□□□□ -1.73
SCFD1-209ENST00000553280 ZNF519Q8TB69 540 aa4.23□□□□□ -1.73
SCFD1-209ENST00000553280 ZDHHC19Q8WVZ1 309 aaPredicted RBP4.23□□□□□ -1.73
SCFD1-209ENST00000553280 DLX4Q92988 240 aaPredicted RBP4.23□□□□□ -1.73
SCFD1-209ENST00000553280 FBXO17Q96EF6 278 aa4.23□□□□□ -1.73
SCFD1-209ENST00000553280 C4orf36Q96KX1 117 aa4.23□□□□□ -1.73
SCFD1-209ENST00000553280 TNFRSF13CQ96RJ3 184 aa4.23□□□□□ -1.73
SCFD1-209ENST00000553280 SYT15Q9BQS2 421 aa4.23□□□□□ -1.73
SCFD1-209ENST00000553280 RDH8Q9NYR8 311 aa4.23□□□□□ -1.73
SCFD1-209ENST00000553280 THYN1Q9P016 225 aa4.23□□□□□ -1.73
SCFD1-209ENST00000553280 MBD2Q9UBB5 411 aa4.23□□□□□ -1.73
SCFD1-209ENST00000553280 PURGQ9UJV8 347 aaKnown RBP4.23□□□□□ -1.73
SCFD1-209ENST00000553280 CARMIL1Q5VZK9 1371 aa4.23□□□□□ -1.73
SCFD1-209ENST00000553280 NPIPA5A0A0B4J1W7 369 aa4.22□□□□□ -1.73
SCFD1-209ENST00000553280 NPIPA5E9PKD4 350 aa4.22□□□□□ -1.73
SCFD1-209ENST00000553280 H0YL77 283 aa4.22□□□□□ -1.73
SCFD1-209ENST00000553280 NR5A2O00482 541 aa4.22□□□□□ -1.73
SCFD1-209ENST00000553280 CYB561D2O14569 222 aa4.22□□□□□ -1.73
SCFD1-209ENST00000553280 EI24O14681 340 aa4.22□□□□□ -1.73
SCFD1-209ENST00000553280 XPO1O14980 1071 aaKnown RBP4.22□□□□□ -1.73
SCFD1-209ENST00000553280 ALOX15BO15296 676 aa4.22□□□□□ -1.73
SCFD1-209ENST00000553280 SDC3O75056 442 aa4.22□□□□□ -1.73
SCFD1-209ENST00000553280 DUSP11O75319 330 aaKnown RBP4.22□□□□□ -1.73
SCFD1-209ENST00000553280 MBD3O95983 291 aa4.22□□□□□ -1.73
SCFD1-209ENST00000553280 OAS1P00973 400 aaKnown RBP4.22□□□□□ -1.73
SCFD1-209ENST00000553280 CHRNA1P02708 482 aa4.22□□□□□ -1.73
SCFD1-209ENST00000553280 RAG2P55895 527 aa4.22□□□□□ -1.73
SCFD1-209ENST00000553280 PEX3P56589 373 aa4.22□□□□□ -1.73
SCFD1-209ENST00000553280 SPIBQ01892 262 aa4.22□□□□□ -1.73
SCFD1-209ENST00000553280 ZP4Q12836 540 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms