RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 KANK1Q14678 1352 aa5.04□□□□□ -1.6
SCFD1-208ENST00000553278 FAM240BA0A1B0GVZ2 78 aa5.03□□□□□ -1.6
SCFD1-208ENST00000553278 OR5H15A6NDH6 313 aa5.03□□□□□ -1.6
SCFD1-208ENST00000553278 TMEM110-MUSTN1A8MSY1 372 aa5.03□□□□□ -1.6
SCFD1-208ENST00000553278 H0YC42 278 aa5.03□□□□□ -1.6
SCFD1-208ENST00000553278 H3BMH7 237 aa5.03□□□□□ -1.6
SCFD1-208ENST00000553278 ZSCAN12O43309 604 aa5.03□□□□□ -1.6
SCFD1-208ENST00000553278 ECI2O75521 394 aa5.03□□□□□ -1.6
SCFD1-208ENST00000553278 NEBLO76041 1014 aa5.03□□□□□ -1.6
SCFD1-208ENST00000553278 UQCRC2P22695 453 aa5.03□□□□□ -1.6
SCFD1-208ENST00000553278 RPL23AP62750 156 aaKnown RBP5.03□□□□□ -1.6
SCFD1-208ENST00000553278 RIGQ13278 110 aa5.03□□□□□ -1.6
SCFD1-208ENST00000553278 EFTUD2Q15029 972 aaKnown RBP eCLIP5.03□□□□□ -1.6
SCFD1-208ENST00000553278 CAMK4Q16566 473 aa5.03□□□□□ -1.6
SCFD1-208ENST00000553278 ACCSLQ4AC99 568 aa5.03□□□□□ -1.6
SCFD1-208ENST00000553278 PHYHD1Q5SRE7 291 aa5.03□□□□□ -1.6
SCFD1-208ENST00000553278 PYHIN1Q6K0P9 492 aa5.03□□□□□ -1.6
SCFD1-208ENST00000553278 METAP1DQ6UB28 335 aaPredicted RBP5.03□□□□□ -1.6
SCFD1-208ENST00000553278 CCBE1Q6UXH8 406 aaPredicted RBP5.03□□□□□ -1.6
SCFD1-208ENST00000553278 ZNF562Q6V9R5 426 aa5.03□□□□□ -1.6
SCFD1-208ENST00000553278 Q7L0L9 218 aa5.03□□□□□ -1.6
SCFD1-208ENST00000553278 CHMP1BQ7LBR1 199 aa5.03□□□□□ -1.6
SCFD1-208ENST00000553278 DPY19L4Q7Z388 723 aa5.03□□□□□ -1.6
SCFD1-208ENST00000553278 STPG4Q8N801 248 aa5.03□□□□□ -1.6
SCFD1-208ENST00000553278 NECAB1Q8N987 351 aa5.03□□□□□ -1.6
SCFD1-208ENST00000553278 SYT14Q8NB59 555 aa5.03□□□□□ -1.6
SCFD1-208ENST00000553278 POC1AQ8NBT0 407 aa5.03□□□□□ -1.6
SCFD1-208ENST00000553278 OR2T11Q8NH01 316 aa5.03□□□□□ -1.6
SCFD1-208ENST00000553278 RPLP0P6Q8NHW5 317 aa5.03□□□□□ -1.6
SCFD1-208ENST00000553278 FBXO25Q8TCJ0 367 aa5.03□□□□□ -1.6
SCFD1-208ENST00000553278 LIPHQ8WWY8 451 aa5.03□□□□□ -1.6
SCFD1-208ENST00000553278 TMEM43Q9BTV4 400 aa5.03□□□□□ -1.6
SCFD1-208ENST00000553278 PINK1Q9BXM7 581 aa5.03□□□□□ -1.6
SCFD1-208ENST00000553278 ALG9Q9H6U8 611 aa5.03□□□□□ -1.6
SCFD1-208ENST00000553278 MEAF6Q9HAF1 191 aa5.03□□□□□ -1.6
SCFD1-208ENST00000553278 KLRF1Q9NZS2 232 aa5.03□□□□□ -1.6
SCFD1-208ENST00000553278 CRLS1Q9UJA2 301 aa5.03□□□□□ -1.6
SCFD1-208ENST00000553278 SLC9A8Q9Y2E8 581 aa5.03□□□□□ -1.6
SCFD1-208ENST00000553278 WDR45Q9Y484 360 aa5.03□□□□□ -1.6
SCFD1-208ENST00000553278 AFF2P51816 1311 aa5.02□□□□□ -1.61
SCFD1-208ENST00000553278 LOC390937A0A1W2PQ73 354 aa5.02□□□□□ -1.61
SCFD1-208ENST00000553278 HELTA6NFD8 242 aa5.02□□□□□ -1.61
SCFD1-208ENST00000553278 MFSD2BA6NFX1 497 aa5.02□□□□□ -1.61
SCFD1-208ENST00000553278 DNAJC9-AS1A6NH13 148 aa5.02□□□□□ -1.61
SCFD1-208ENST00000553278 ARPC3O15145 178 aa5.02□□□□□ -1.61
SCFD1-208ENST00000553278 MED7O43513 233 aa5.02□□□□□ -1.61
SCFD1-208ENST00000553278 LCMT2O60294 686 aaKnown RBP5.02□□□□□ -1.61
SCFD1-208ENST00000553278 RHBDL1O75783 438 aa5.02□□□□□ -1.61
SCFD1-208ENST00000553278 CDC123O75794 336 aaPredicted RBP5.02□□□□□ -1.61
SCFD1-208ENST00000553278 PPP1R3DO95685 299 aa5.02□□□□□ -1.61
SCFD1-208ENST00000553278 NGFRP08138 427 aa5.02□□□□□ -1.61
SCFD1-208ENST00000553278 DBTP11182 482 aaKnown RBP5.02□□□□□ -1.61
SCFD1-208ENST00000553278 PAX1P15863 534 aa5.02□□□□□ -1.61
SCFD1-208ENST00000553278 NT5EP21589 574 aa5.02□□□□□ -1.61
SCFD1-208ENST00000553278 GPR183P32249 361 aa5.02□□□□□ -1.61
SCFD1-208ENST00000553278 GRIA1P42261 906 aa5.02□□□□□ -1.61
SCFD1-208ENST00000553278 XGP55808 180 aa5.02□□□□□ -1.61
SCFD1-208ENST00000553278 FGL1Q08830 312 aa5.02□□□□□ -1.61
SCFD1-208ENST00000553278 RBBP4Q09028 425 aa5.02□□□□□ -1.61
SCFD1-208ENST00000553278 ZP4Q12836 540 aa5.02□□□□□ -1.61
SCFD1-208ENST00000553278 GCKRQ14397 625 aa5.02□□□□□ -1.61
SCFD1-208ENST00000553278 RCN1Q15293 331 aa5.02□□□□□ -1.61
SCFD1-208ENST00000553278 KIAA1644Q3SXP7 199 aa5.02□□□□□ -1.61
SCFD1-208ENST00000553278 GTDC1Q4AE62 458 aa5.02□□□□□ -1.61
SCFD1-208ENST00000553278 BEND6Q5SZJ8 279 aaPredicted RBP5.02□□□□□ -1.61
SCFD1-208ENST00000553278 TAF3Q5VWG9 929 aa5.02□□□□□ -1.61
SCFD1-208ENST00000553278 C9orf57Q5W0N0 161 aa5.02□□□□□ -1.61
SCFD1-208ENST00000553278 ZNF841Q6ZN19 808 aa5.02□□□□□ -1.61
SCFD1-208ENST00000553278 Q6ZPB1 254 aaPredicted RBP5.02□□□□□ -1.61
SCFD1-208ENST00000553278 C9orf47Q6ZRZ4 202 aa5.02□□□□□ -1.61
SCFD1-208ENST00000553278 SH2D5Q6ZV89 423 aa5.02□□□□□ -1.61
SCFD1-208ENST00000553278 TRPT1Q86TN4 253 aaKnown RBP5.02□□□□□ -1.61
SCFD1-208ENST00000553278 UBE2J2Q8N2K1 259 aa5.02□□□□□ -1.61
SCFD1-208ENST00000553278 NTN5Q8WTR8 489 aaPredicted RBP5.02□□□□□ -1.61
SCFD1-208ENST00000553278 MED30Q96HR3 178 aa5.02□□□□□ -1.61
SCFD1-208ENST00000553278 PIWIL1Q96J94 861 aaKnown RBP5.02□□□□□ -1.61
SCFD1-208ENST00000553278 ELMO2Q96JJ3 720 aa5.02□□□□□ -1.61
SCFD1-208ENST00000553278 CAPNS2Q96L46 248 aa5.02□□□□□ -1.61
SCFD1-208ENST00000553278 ANKRD27Q96NW4 1050 aa5.02□□□□□ -1.61
SCFD1-208ENST00000553278 NPAS2Q99743 824 aa5.02□□□□□ -1.61
SCFD1-208ENST00000553278 METTL7AQ9H8H3 244 aa5.02□□□□□ -1.61
SCFD1-208ENST00000553278 ETNK2Q9NVF9 386 aa5.02□□□□□ -1.61
SCFD1-208ENST00000553278 BARHL2Q9NY43 387 aa5.02□□□□□ -1.61
SCFD1-208ENST00000553278 NIP7Q9Y221 180 aaKnown RBP eCLIP5.02□□□□□ -1.61
SCFD1-208ENST00000553278 ZHX2Q9Y6X8 837 aa5.02□□□□□ -1.61
SCFD1-208ENST00000553278 TRIP12Q14669 1992 aaPredicted RBP5.02□□□□□ -1.61
SCFD1-208ENST00000553278 GREB1LQ9C091 1923 aaPredicted RBP5.01□□□□□ -1.61
SCFD1-208ENST00000553278 TTC21BQ7Z4L5 1316 aa5.01□□□□□ -1.61
SCFD1-208ENST00000553278 A0A0G2JLW4 131 aa5.01□□□□□ -1.61
SCFD1-208ENST00000553278 A0A0J9YVX5 310 aa5.01□□□□□ -1.61
SCFD1-208ENST00000553278 IQCMA0A1B0GVH7 501 aa5.01□□□□□ -1.61
SCFD1-208ENST00000553278 GOLGA8OA6NCC3 632 aa5.01□□□□□ -1.61
SCFD1-208ENST00000553278 METTL21EPA6NDL7 271 aa5.01□□□□□ -1.61
SCFD1-208ENST00000553278 MSGN1A6NI15 193 aa5.01□□□□□ -1.61
SCFD1-208ENST00000553278 LRRIQ4A6NIV6 560 aa5.01□□□□□ -1.61
SCFD1-208ENST00000553278 ZNF716A6NP11 495 aa5.01□□□□□ -1.61
SCFD1-208ENST00000553278 GOLGA8NF8WBI6 632 aa5.01□□□□□ -1.61
SCFD1-208ENST00000553278 TRMUO75648 421 aaKnown RBP5.01□□□□□ -1.61
SCFD1-208ENST00000553278 CLPTM1O96005 669 aa5.01□□□□□ -1.61
SCFD1-208ENST00000553278 RPLP0P05388 317 aaKnown RBP5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms