RNA–Protein interactions for RNA: ENST00000552440.5

USP44-208, Transcript of ubiquitin specific peptidase 44, human

TSL 5 BASIC

Gene USP44, Length 1,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP44-208	ENST00000552440	SERPINE3	A8MV23	424 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	NPIPA3	F8WFD2	350 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440		H0YIZ8	118 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440		I6L893	689 aa	Predicted RBP	3.85	□□□□□ -1.79
USP44-208	ENST00000552440	GOLGA8R	I6L899	631 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440		M0R296	226 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	CLIC1	O00299	241 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	P2RY10	O00398	339 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	STX7	O15400	261 aa	Known RBP	3.85	□□□□□ -1.79
USP44-208	ENST00000552440	RGS11	O94810	467 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	AHSA1	O95433	338 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	ANP32D	O95626	131 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	APRT	P07741	180 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	SMIM18	P0DKX4	95 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	ENO3	P13929	434 aa	Predicted RBP	3.85	□□□□□ -1.79
USP44-208	ENST00000552440	GP9	P14770	177 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	TNNI1	P19237	187 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	MAOA	P21397	527 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	CHAT	P28329	748 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	LIMK2	P53671	638 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	MAT1A	Q00266	395 aa	Known RBP	3.85	□□□□□ -1.79
USP44-208	ENST00000552440	GAGE2B	Q13066	116 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	MAD2L1	Q13257	205 aa	Predicted RBP	3.85	□□□□□ -1.79
USP44-208	ENST00000552440	CDH18	Q13634	790 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	EXOSC2	Q13868	293 aa	Known RBP	3.85	□□□□□ -1.79
USP44-208	ENST00000552440	TAF13	Q15543	124 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	ETFDH	Q16134	617 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	SYPL1	Q16563	259 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	GAGE2E	Q4V326	116 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	HHAT	Q5VTY9	493 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	GAGE2A	Q6NT46	116 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	TMIGD1	Q6UXZ0	262 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	HSDL2	Q6YN16	418 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	PATL1	Q86TB9	770 aa	Known RBP	3.85	□□□□□ -1.79
USP44-208	ENST00000552440	CCDC25	Q86WR0	208 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	STX12	Q86Y82	276 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	CNGA4	Q8IV77	575 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	NAGS	Q8N159	534 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	EMC1	Q8N766	993 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	COLGALT1	Q8NBJ5	622 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	SLC44A5	Q8NCS7	719 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	OR5M8	Q8NGP6	311 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	NTN5	Q8WTR8	489 aa	Predicted RBP	3.85	□□□□□ -1.79
USP44-208	ENST00000552440	ASB10	Q8WXI3	467 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	TFAP2B	Q92481	460 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	TGM7	Q96PF1	710 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	EFHD1	Q9BUP0	239 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	GATA5	Q9BWX5	397 aa	Predicted RBP	3.85	□□□□□ -1.79
USP44-208	ENST00000552440	ANGPTL4	Q9BY76	406 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	NLN	Q9BYT8	704 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	PRRG4	Q9BZD6	226 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	OPN3	Q9H1Y3	402 aa	Predicted RBP	3.85	□□□□□ -1.79
USP44-208	ENST00000552440	NARFL	Q9H6Q4	476 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	SEBOX	Q9HB31	216 aa	Predicted RBP	3.85	□□□□□ -1.79
USP44-208	ENST00000552440	NTN4	Q9HB63	628 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	PXMP2	Q9NR77	195 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	MED17	Q9NVC6	651 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	MS4A12	Q9NXJ0	267 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	RBAK	Q9NYW8	714 aa	Predicted RBP	3.85	□□□□□ -1.79
USP44-208	ENST00000552440	PTTG3P	Q9NZH4	202 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	KLHL13	Q9P2N7	655 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	GAGE2D	Q9UEU5	116 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	DCDC2	Q9UHG0	476 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	RPH3AL	Q9UNE2	315 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	WDR45	Q9Y484	360 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	GRIN2B	Q13224	1484 aa		3.85	□□□□□ -1.79
USP44-208	ENST00000552440	WDR97	A6NE52	1622 aa		3.84	□□□□□ -1.79
USP44-208	ENST00000552440	RAB19	A4D1S5	217 aa		3.84	□□□□□ -1.79
USP44-208	ENST00000552440	CASTOR2	A6NHX0	329 aa		3.84	□□□□□ -1.79
USP44-208	ENST00000552440		E9PMD0	336 aa		3.84	□□□□□ -1.79
USP44-208	ENST00000552440	SGK494	L7N484	410 aa		3.84	□□□□□ -1.79
USP44-208	ENST00000552440	ITGB1BP1	O14713	200 aa		3.84	□□□□□ -1.79
USP44-208	ENST00000552440	RS1	O15537	224 aa		3.84	□□□□□ -1.79
USP44-208	ENST00000552440	BUD23	O43709	281 aa	Known RBP	3.84	□□□□□ -1.79
USP44-208	ENST00000552440	SCN2B	O60939	215 aa		3.84	□□□□□ -1.79
USP44-208	ENST00000552440	ZNF189	O75820	626 aa	Predicted RBP	3.84	□□□□□ -1.79
USP44-208	ENST00000552440	HIST1H2AG	P0C0S8	130 aa	Predicted RBP	3.84	□□□□□ -1.79
USP44-208	ENST00000552440	HAPLN1	P10915	354 aa	Predicted RBP	3.84	□□□□□ -1.79
USP44-208	ENST00000552440	EGR2	P11161	476 aa	Predicted RBP	3.84	□□□□□ -1.79
USP44-208	ENST00000552440	EZR	P15311	586 aa	Known RBP	3.84	□□□□□ -1.79
USP44-208	ENST00000552440	GOT1	P17174	413 aa		3.84	□□□□□ -1.79
USP44-208	ENST00000552440	PSMA2	P25787	234 aa		3.84	□□□□□ -1.79
USP44-208	ENST00000552440	PSMB6	P28072	239 aa		3.84	□□□□□ -1.79
USP44-208	ENST00000552440	HOXA9	P31269	272 aa		3.84	□□□□□ -1.79
USP44-208	ENST00000552440	HNRNPH3	P31942	346 aa	Known RBP	3.84	□□□□□ -1.79
USP44-208	ENST00000552440	CYLC1	P35663	651 aa	Predicted RBP	3.84	□□□□□ -1.79
USP44-208	ENST00000552440	FOLR3	P41439	243 aa		3.84	□□□□□ -1.79
USP44-208	ENST00000552440	GDI2	P50395	445 aa	Known RBP	3.84	□□□□□ -1.79
USP44-208	ENST00000552440	SLC7A2	P52569	658 aa		3.84	□□□□□ -1.79
USP44-208	ENST00000552440	PSMC5	P62195	406 aa		3.84	□□□□□ -1.79
USP44-208	ENST00000552440	CDK16	Q00536	496 aa		3.84	□□□□□ -1.79
USP44-208	ENST00000552440	SIGLEC14	Q08ET2	396 aa		3.84	□□□□□ -1.79
USP44-208	ENST00000552440	ITIH4	Q14624	930 aa		3.84	□□□□□ -1.79
USP44-208	ENST00000552440	CASP8	Q14790	479 aa		3.84	□□□□□ -1.79
USP44-208	ENST00000552440	C1orf94	Q6P1W5	598 aa		3.84	□□□□□ -1.79
USP44-208	ENST00000552440	CEP85	Q6P2H3	762 aa		3.84	□□□□□ -1.79
USP44-208	ENST00000552440	DPY19L4	Q7Z388	723 aa		3.84	□□□□□ -1.79
USP44-208	ENST00000552440	DCXR	Q7Z4W1	244 aa		3.84	□□□□□ -1.79
USP44-208	ENST00000552440	BCDIN3D	Q7Z5W3	292 aa	Known RBP	3.84	□□□□□ -1.79
USP44-208	ENST00000552440	SNX20	Q7Z614	316 aa		3.84	□□□□□ -1.79

Retrieved 100 of 20,778 RNA–protein pairs in 80 ms